Wall clock time and date at job start Tue Mar 31 2020 12:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38239 * 119.99990 * 2 1 4 4 C 1.38229 * 119.99825 * 179.74486 * 3 2 1 5 5 C 1.50705 * 119.99749 * 180.27193 * 4 3 2 6 6 C 1.38233 * 120.00270 * 0.55812 * 4 3 2 7 7 C 1.50707 * 120.00101 * 179.72242 * 6 4 3 8 8 H 1.09000 * 109.46982 * 196.93447 * 7 6 4 9 9 C 1.53002 * 109.46812 * 76.93774 * 7 6 4 10 10 N 1.46889 * 109.47200 * 316.93465 * 7 6 4 11 11 C 1.46961 * 111.00088 * 303.80184 * 10 7 6 12 12 C 1.53051 * 109.36366 * 176.81124 * 11 10 7 13 13 N 1.46952 * 109.36576 * 58.40389 * 12 11 10 14 14 C 1.46897 * 111.00078 * 176.81247 * 13 12 11 15 15 C 1.50698 * 109.47744 * 57.89888 * 14 13 12 16 16 H 1.08005 * 119.99660 * 5.05086 * 15 14 13 17 17 C 1.37873 * 120.00735 * 185.05596 * 15 14 13 18 18 N 1.31504 * 120.00496 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 119.99665 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47128 * 89.99996 * 19 17 15 21 21 H 1.48495 * 109.47147 * 210.00070 * 19 17 15 22 22 H 1.48499 * 109.47093 * 330.00209 * 19 17 15 23 23 C 1.46963 * 110.87891 * 300.67374 * 13 12 11 24 24 C 1.46955 * 111.00367 * 180.02562 * 10 7 6 25 25 C 1.38232 * 119.99993 * 359.69693 * 6 4 3 26 26 C 1.50700 * 120.00291 * 180.02562 * 25 6 4 27 27 C 1.38236 * 120.00080 * 0.02562 * 25 6 4 28 28 H 1.08998 * 109.46958 * 269.72442 * 1 2 3 29 29 H 1.08999 * 109.47098 * 29.72368 * 1 2 3 30 30 H 1.09005 * 109.47133 * 149.72776 * 1 2 3 31 31 H 1.08001 * 119.99562 * 0.02562 * 3 2 1 32 32 H 1.08991 * 109.47467 * 269.03159 * 5 4 3 33 33 H 1.09000 * 109.46894 * 29.03790 * 5 4 3 34 34 H 1.09005 * 109.46629 * 149.03729 * 5 4 3 35 35 H 1.09000 * 109.46685 * 294.41348 * 9 7 6 36 36 H 1.08993 * 109.47554 * 54.41835 * 9 7 6 37 37 H 1.09001 * 109.46541 * 174.42190 * 9 7 6 38 38 H 1.09000 * 109.48670 * 296.77787 * 11 10 7 39 39 H 1.08998 * 109.49018 * 56.84441 * 11 10 7 40 40 H 1.08997 * 109.48990 * 298.43064 * 12 11 10 41 41 H 1.09005 * 109.48770 * 178.36309 * 12 11 10 42 42 H 1.09003 * 109.46959 * 177.90067 * 14 13 12 43 43 H 1.09004 * 109.47204 * 297.89392 * 14 13 12 44 44 H 0.97001 * 120.00592 * 180.02562 * 18 17 15 45 45 H 1.09000 * 109.48949 * 299.35675 * 23 13 12 46 46 H 1.08998 * 109.49105 * 179.28797 * 23 13 12 47 47 H 1.09005 * 109.48276 * 303.15476 * 24 10 7 48 48 H 1.08998 * 109.48730 * 63.19410 * 24 10 7 49 49 H 1.08996 * 109.47217 * 270.01977 * 26 25 6 50 50 H 1.09005 * 109.47159 * 30.02188 * 26 25 6 51 51 H 1.09000 * 109.47334 * 150.02329 * 26 25 6 52 52 H 1.07994 * 120.00311 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0053 5 6 4.3339 2.5023 0.0115 6 6 4.2717 0.0001 -0.0010 7 6 5.7788 0.0001 -0.0015 8 1 6.1420 -0.9814 -0.3060 9 6 6.2892 0.3190 1.4052 10 7 6.2681 1.0167 -0.9422 11 6 5.7236 0.7937 -2.2888 12 6 6.1921 1.9161 -3.2179 13 7 7.6611 1.9449 -3.2451 14 6 8.1504 2.9615 -4.1857 15 6 7.6063 4.3113 -3.7946 16 1 7.0289 4.4188 -2.8882 17 6 7.8453 5.4091 -4.5938 18 7 7.3700 6.5868 -4.2527 19 14 8.8444 5.2234 -6.1613 20 1 7.9360 4.9082 -7.2929 21 1 9.5642 6.4914 -6.4426 22 1 9.8274 4.1228 -5.9942 23 6 8.2056 2.1679 -1.8984 24 6 7.7371 1.0452 -0.9698 25 6 3.5806 -1.1971 -0.0063 26 6 4.3341 -2.5022 -0.0126 27 6 2.1982 -1.1972 -0.0059 28 1 -0.3633 -0.0049 1.0276 29 1 -0.3633 0.8924 -0.5095 30 1 -0.3634 -0.8876 -0.5181 31 1 1.6581 2.1325 0.0004 32 1 4.5346 2.8109 -1.0143 33 1 3.7355 3.2649 0.5100 34 1 5.2768 2.3749 0.5436 35 1 6.0098 1.3386 1.6705 36 1 5.8468 -0.3763 2.1185 37 1 7.3746 0.2220 1.4284 38 1 6.0765 -0.1647 -2.6696 39 1 4.6345 0.7891 -2.2446 40 1 5.8163 2.8716 -2.8521 41 1 5.8133 1.7371 -4.2242 42 1 9.2398 2.9872 -4.1587 43 1 7.8178 2.7139 -5.1938 44 1 7.5379 7.3591 -4.8152 45 1 7.8527 3.1264 -1.5176 46 1 9.2947 2.1726 -1.9427 47 1 8.1162 1.2239 0.0365 48 1 8.1125 0.0894 -1.3354 49 1 4.5157 -2.8119 -1.0418 50 1 5.2865 -2.3743 0.5018 51 1 3.7450 -3.2643 0.4975 52 1 1.6583 -2.1324 -0.0104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611174243.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:45 Heat of formation + Delta-G solvation = 17.245429 kcal Electronic energy + Delta-G solvation = -28131.441290 eV Core-core repulsion = 24708.821145 eV Total energy + Delta-G solvation = -3422.620146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.47068 -39.78802 -37.35897 -34.93664 -34.45440 -33.93238 -32.21739 -31.45549 -29.43226 -28.71205 -27.69495 -27.44715 -26.41066 -24.22471 -23.48389 -22.44062 -21.58228 -20.70755 -20.54580 -18.87697 -17.69195 -17.15828 -16.58079 -16.11457 -15.91558 -15.70220 -15.51469 -15.21710 -15.18045 -14.85851 -14.51469 -14.35309 -14.21210 -13.95230 -13.76852 -13.70477 -13.59112 -13.52931 -13.27439 -13.04747 -12.93443 -12.80888 -12.73537 -12.52110 -12.30910 -12.28102 -12.10917 -12.02404 -11.90239 -11.73972 -11.72667 -11.65560 -11.30689 -11.23016 -10.78163 -9.37742 -9.21483 -9.13882 -8.93400 -8.30211 -6.35029 0.46296 0.54381 1.35123 1.36192 1.48360 2.33960 2.76417 3.00120 3.04750 3.33082 3.74459 3.93968 4.03698 4.04941 4.08396 4.24344 4.26072 4.28327 4.44694 4.48157 4.55336 4.56299 4.59563 4.66964 4.69872 4.74174 4.81050 4.82376 4.85061 4.85889 4.87902 4.94537 4.97348 5.01354 5.05533 5.09915 5.11008 5.12632 5.20665 5.22183 5.26096 5.36709 5.40883 5.51896 5.63785 5.69804 5.74059 5.86097 6.08034 6.14438 6.21794 6.28682 6.38494 6.43003 6.72174 7.31559 8.86003 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017520 B = 0.003607 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.816298 B = 7760.870403 C = 8441.357805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.087 4.087 3 C -0.151 4.151 4 C -0.058 4.058 5 C -0.099 4.099 6 C -0.097 4.097 7 C 0.123 3.877 8 H 0.060 0.940 9 C -0.141 4.141 10 N -0.531 5.531 11 C 0.079 3.921 12 C 0.070 3.930 13 N -0.530 5.530 14 C 0.162 3.838 15 C -0.546 4.546 16 H 0.035 0.965 17 C 0.012 3.988 18 N -0.947 5.947 19 Si 0.948 3.052 20 H -0.269 1.269 21 H -0.285 1.285 22 H -0.246 1.246 23 C 0.064 3.936 24 C 0.067 3.933 25 C -0.081 4.081 26 C -0.114 4.114 27 C -0.137 4.137 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.118 0.882 32 H 0.049 0.951 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.037 0.963 39 H 0.071 0.929 40 H 0.018 0.982 41 H 0.060 0.940 42 H 0.029 0.971 43 H 0.026 0.974 44 H 0.265 0.735 45 H 0.015 0.985 46 H 0.072 0.928 47 H 0.095 0.905 48 H 0.044 0.956 49 H 0.070 0.930 50 H 0.072 0.928 51 H 0.081 0.919 52 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.209 -19.661 11.274 24.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.088 4.088 3 C -0.169 4.169 4 C -0.058 4.058 5 C -0.155 4.155 6 C -0.097 4.097 7 C 0.016 3.984 8 H 0.077 0.923 9 C -0.199 4.199 10 N -0.257 5.257 11 C -0.049 4.049 12 C -0.059 4.059 13 N -0.254 5.254 14 C 0.034 3.966 15 C -0.585 4.585 16 H 0.054 0.946 17 C -0.186 4.186 18 N -0.587 5.587 19 Si 0.772 3.228 20 H -0.194 1.194 21 H -0.210 1.210 22 H -0.170 1.170 23 C -0.064 4.064 24 C -0.060 4.060 25 C -0.081 4.081 26 C -0.170 4.170 27 C -0.155 4.155 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.136 0.864 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.089 0.911 40 H 0.036 0.964 41 H 0.079 0.921 42 H 0.048 0.952 43 H 0.044 0.956 44 H 0.074 0.926 45 H 0.034 0.966 46 H 0.091 0.909 47 H 0.114 0.886 48 H 0.062 0.938 49 H 0.089 0.911 50 H 0.091 0.909 51 H 0.100 0.900 52 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.197 -19.504 11.230 23.952 hybrid contribution 0.196 1.162 -0.937 1.505 sum -8.000 -18.342 10.293 22.503 Atomic orbital electron populations 1.20803 0.89664 1.03278 1.02955 1.20163 0.97231 0.92781 0.98583 1.21096 0.93666 0.98254 1.03910 1.19801 0.93468 0.95245 0.97292 1.20840 1.00051 0.92956 1.01673 1.19533 0.94726 0.92377 1.03097 1.20570 0.90585 0.93537 0.93723 0.92275 1.21922 1.01423 1.02409 0.94103 1.62375 1.08019 1.47944 1.07347 1.21926 0.98883 0.96113 0.87958 1.21891 0.88599 0.97058 0.98346 1.62657 1.07778 1.46783 1.08170 1.20005 0.95604 0.88215 0.92784 1.21875 1.33854 0.94048 1.08696 0.94644 1.25898 0.96509 0.94616 1.01606 1.70079 1.47549 1.00691 1.40424 0.85694 0.79625 0.78211 0.79282 1.19390 1.21037 1.16989 1.21986 0.98903 0.96835 0.88702 1.22163 0.87215 0.97131 0.99523 1.19985 0.94123 0.95103 0.98902 1.20859 1.00216 0.93239 1.02703 1.21057 0.93331 0.98043 1.03092 0.90288 0.91607 0.90444 0.86351 0.93279 0.93625 0.89770 0.92287 0.91076 0.91157 0.94486 0.91080 0.96385 0.92132 0.95243 0.95567 0.92604 0.96639 0.90921 0.88639 0.93791 0.91093 0.90942 0.89992 0.84330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 10.01 71.24 0.71 -1.01 16 2 C -0.09 -1.89 5.88 -19.86 -0.12 -2.01 16 3 C -0.15 -3.88 9.35 22.27 0.21 -3.67 16 4 C -0.06 -1.60 4.85 -19.87 -0.10 -1.69 16 5 C -0.10 -3.05 8.22 71.24 0.59 -2.46 16 6 C -0.10 -2.40 3.63 -19.86 -0.07 -2.47 16 7 C 0.12 2.90 1.56 44.17 0.07 2.97 16 8 H 0.06 1.30 6.01 -2.39 -0.01 1.28 16 9 C -0.14 -2.87 8.58 71.98 0.62 -2.26 16 10 N -0.53 -15.53 1.92 -874.87 -1.68 -17.22 16 11 C 0.08 2.58 4.40 86.31 0.38 2.96 16 12 C 0.07 2.85 5.22 86.31 0.45 3.30 16 13 N -0.53 -22.25 4.92 -900.27 -4.43 -26.67 16 14 C 0.16 7.80 4.22 85.56 0.36 8.16 16 15 C -0.55 -31.36 8.21 25.60 0.21 -31.15 16 16 H 0.04 2.29 6.07 -2.91 -0.02 2.27 16 17 C 0.01 0.68 5.47 84.66 0.46 1.14 16 18 N -0.95 -59.65 13.96 21.44 0.30 -59.35 16 19 Si 0.95 44.41 27.37 68.60 1.88 46.29 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 22 H -0.25 -10.72 6.69 99.48 0.67 -10.06 16 23 C 0.06 2.46 5.33 86.31 0.46 2.92 16 24 C 0.07 1.96 5.31 86.31 0.46 2.42 16 25 C -0.08 -1.72 5.88 -19.87 -0.12 -1.84 16 26 C -0.11 -1.79 9.22 71.24 0.66 -1.13 16 27 C -0.14 -2.78 9.36 22.27 0.21 -2.57 16 28 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 1.02 8.08 -2.39 -0.02 1.00 16 30 H 0.08 0.99 8.09 -2.38 -0.02 0.97 16 31 H 0.12 2.88 8.06 -2.91 -0.02 2.86 16 32 H 0.05 1.81 6.61 -2.39 -0.02 1.80 16 33 H 0.04 1.32 8.08 -2.39 -0.02 1.30 16 34 H 0.08 2.58 4.24 -2.38 -0.01 2.57 16 35 H 0.06 1.36 5.96 -2.39 -0.01 1.35 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 1.26 6.65 -2.39 -0.02 1.25 16 38 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 2.34 6.13 -2.39 -0.01 2.32 16 40 H 0.02 0.87 5.96 -2.39 -0.01 0.85 16 41 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 42 H 0.03 1.41 7.51 -2.39 -0.02 1.39 16 43 H 0.03 1.26 7.29 -2.38 -0.02 1.24 16 44 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 45 H 0.02 0.70 6.85 -2.39 -0.02 0.68 16 46 H 0.07 2.64 8.11 -2.39 -0.02 2.62 16 47 H 0.10 2.37 6.27 -2.38 -0.01 2.36 16 48 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.07 1.08 6.43 -2.38 -0.02 1.06 16 51 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 52 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -66.42 379.45 2.36 -64.07 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.85 Total: 21.27 kcal Atomic # 6 Polarization: -33.83 SS G_CDS: 5.44 Total: -28.39 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -5.81 Total: -103.24 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.88 Total: 46.29 kcal Total: -66.42 2.36 -64.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611174243.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.314 kcal (2) G-P(sol) polarization free energy of solvation -66.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds