Wall clock time and date at job start Tue Mar 31 2020 12:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38232 * 119.99993 * 2 1 4 4 C 1.38231 * 119.99916 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.00019 * 179.97438 * 4 3 2 6 6 C 1.38228 * 120.00359 * 359.97438 * 4 3 2 7 7 C 1.50700 * 120.00544 * 180.02562 * 6 4 3 8 8 H 1.08998 * 109.47079 * 277.70956 * 7 6 4 9 9 C 1.52999 * 109.47008 * 37.70388 * 7 6 4 10 10 N 1.46898 * 109.47391 * 157.70609 * 7 6 4 11 11 C 1.46963 * 110.99826 * 162.86532 * 10 7 6 12 12 C 1.53052 * 109.36029 * 183.18908 * 11 10 7 13 13 N 1.46958 * 109.36694 * 301.59976 * 12 11 10 14 14 C 1.46898 * 111.00167 * 183.19107 * 13 12 11 15 15 C 1.50694 * 109.47292 * 169.99726 * 14 13 12 16 16 H 1.08003 * 119.99904 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00633 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99309 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00529 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47258 * 59.99936 * 19 17 15 21 21 H 1.48504 * 109.46837 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46992 * 299.99782 * 19 17 15 23 23 C 1.46949 * 110.88131 * 59.31935 * 13 12 11 24 24 C 1.46958 * 111.00167 * 286.66695 * 10 7 6 25 25 C 1.38244 * 120.00020 * 0.27601 * 6 4 3 26 26 C 1.50698 * 120.00327 * 179.72932 * 25 6 4 27 27 C 1.38236 * 119.99762 * 179.97438 * 2 1 3 28 28 H 1.08992 * 109.46920 * 90.00217 * 1 2 3 29 29 H 1.09004 * 109.46740 * 210.00458 * 1 2 3 30 30 H 1.08994 * 109.47046 * 330.00119 * 1 2 3 31 31 H 1.08004 * 120.00266 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47311 * 239.38616 * 5 4 3 33 33 H 1.08999 * 109.47292 * 359.38239 * 5 4 3 34 34 H 1.09002 * 109.47576 * 119.38071 * 5 4 3 35 35 H 1.08997 * 109.47552 * 282.34366 * 9 7 6 36 36 H 1.09006 * 109.47210 * 42.34633 * 9 7 6 37 37 H 1.08996 * 109.47079 * 162.33816 * 9 7 6 38 38 H 1.08994 * 109.48566 * 63.22542 * 11 10 7 39 39 H 1.08998 * 109.50792 * 303.16649 * 11 10 7 40 40 H 1.09005 * 109.48633 * 181.63310 * 12 11 10 41 41 H 1.08996 * 109.50900 * 61.57953 * 12 11 10 42 42 H 1.08996 * 109.46901 * 289.99983 * 14 13 12 43 43 H 1.09007 * 109.46790 * 49.99915 * 14 13 12 44 44 H 0.97003 * 119.99967 * 179.97438 * 18 17 15 45 45 H 1.09005 * 109.48903 * 60.65008 * 23 13 12 46 46 H 1.09003 * 109.49382 * 180.70965 * 23 13 12 47 47 H 1.09001 * 109.48483 * 296.77977 * 24 10 7 48 48 H 1.08999 * 109.48714 * 56.81837 * 24 10 7 49 49 H 1.08999 * 109.46952 * 83.28371 * 26 25 6 50 50 H 1.09001 * 109.47039 * 203.28201 * 26 25 6 51 51 H 1.08995 * 109.46920 * 323.28076 * 26 25 6 52 52 H 1.07995 * 120.00136 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3340 2.5022 0.0000 6 6 4.2717 0.0000 0.0016 7 6 5.7787 0.0000 0.0028 8 1 6.1428 0.1374 -1.0154 9 6 6.2880 1.1416 0.8849 10 7 6.2680 -1.2812 0.5291 11 6 7.6799 -1.4898 0.1788 12 6 8.1278 -2.8666 0.6751 13 7 7.9313 -2.9481 2.1292 14 6 8.4205 -4.2293 2.6555 15 6 8.4314 -4.1824 4.1617 16 1 8.1069 -3.2902 4.6765 17 6 8.8546 -5.2788 4.8827 18 7 9.2493 -6.3655 4.2557 19 14 8.8674 -5.2209 6.7497 20 1 7.4899 -4.9747 7.2467 21 1 9.3621 -6.5161 7.2817 22 1 9.7610 -4.1256 7.2048 23 6 6.5195 -2.7395 2.4794 24 6 6.0714 -1.3628 1.9832 25 6 3.5806 -1.1972 -0.0036 26 6 4.3341 -2.5023 -0.0086 27 6 2.1982 -1.1972 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5138 31 1 1.6582 2.1325 -0.0004 32 1 4.9693 2.5546 -0.8842 33 1 3.6258 3.3307 -0.0120 34 1 4.9520 2.5654 0.8956 35 1 6.2025 2.0843 0.3445 36 1 5.6923 1.1900 1.7965 37 1 7.3321 0.9638 1.1423 38 1 8.2890 -0.7179 0.6491 39 1 7.7980 -1.4372 -0.9035 40 1 9.1827 -3.0116 0.4420 41 1 7.5373 -3.6402 0.1844 42 1 7.7647 -5.0334 2.3218 43 1 9.4316 -4.4098 2.2903 44 1 9.5475 -7.1367 4.7629 45 1 5.9102 -3.5115 2.0092 46 1 6.4016 -2.7921 3.5618 47 1 6.6623 -0.5894 2.4739 48 1 5.0167 -1.2173 2.2163 49 1 4.6193 -2.7610 1.0111 50 1 3.6984 -3.2873 -0.4183 51 1 5.2293 -2.4025 -0.6222 52 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611174245.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:49 Heat of formation + Delta-G solvation = 67.446671 kcal Electronic energy + Delta-G solvation = -27984.669024 eV Core-core repulsion = 24564.225768 eV Total energy + Delta-G solvation = -3420.443256 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.67081 -38.58871 -36.01590 -34.19220 -33.17268 -32.35185 -30.49277 -30.21436 -28.27353 -27.39522 -26.98582 -25.88816 -24.73513 -23.18199 -22.14982 -21.19003 -20.69376 -19.87989 -18.87734 -16.37240 -16.33194 -15.93139 -15.34604 -15.02584 -14.71637 -14.46920 -14.24432 -14.10977 -14.00277 -13.77652 -13.54664 -13.15504 -13.11423 -12.82550 -12.74293 -12.62278 -12.25968 -12.08778 -12.00376 -11.77689 -11.70010 -11.47859 -11.25419 -11.00459 -10.92994 -10.82987 -10.77975 -10.71458 -10.60388 -10.38293 -10.30485 -10.14715 -9.66648 -9.17789 -8.44155 -8.42085 -8.27986 -7.77386 -7.18513 -6.01671 -4.03051 1.37953 1.48911 3.33867 3.37892 3.40771 3.73512 4.06184 4.43125 4.70036 4.74264 4.89814 4.96097 4.97865 5.13573 5.18036 5.23228 5.28322 5.33931 5.43663 5.44323 5.49254 5.51808 5.55900 5.63976 5.66439 5.70216 5.74914 5.78400 5.80406 5.90700 5.95904 5.98170 6.07987 6.13563 6.17057 6.17872 6.29046 6.34283 6.46957 6.56732 6.59760 6.63511 6.73630 6.81398 6.93444 7.15135 7.22425 7.31886 7.37036 7.40379 7.81065 8.10975 8.22652 8.57011 9.04321 9.61148 11.09150 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017747 B = 0.003264 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.372854 B = 8577.234788 C = 9059.171702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.086 4.086 3 C -0.135 4.135 4 C -0.074 4.074 5 C -0.133 4.133 6 C -0.087 4.087 7 C 0.122 3.878 8 H 0.086 0.914 9 C -0.200 4.200 10 N -0.520 5.520 11 C 0.054 3.946 12 C 0.058 3.942 13 N -0.537 5.537 14 C 0.195 3.805 15 C -0.508 4.508 16 H 0.061 0.939 17 C 0.056 3.944 18 N -0.899 5.899 19 Si 0.897 3.103 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.066 3.934 24 C 0.053 3.947 25 C -0.042 4.042 26 C -0.109 4.109 27 C -0.135 4.135 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.115 0.885 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.041 0.959 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.030 0.970 42 H -0.009 1.009 43 H 0.029 0.971 44 H 0.262 0.738 45 H 0.031 0.969 46 H 0.084 0.916 47 H 0.043 0.957 48 H 0.070 0.930 49 H 0.082 0.918 50 H 0.030 0.970 51 H 0.100 0.900 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.815 15.664 -11.447 23.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.086 4.086 3 C -0.153 4.153 4 C -0.075 4.075 5 C -0.189 4.189 6 C -0.087 4.087 7 C 0.014 3.986 8 H 0.103 0.897 9 C -0.258 4.258 10 N -0.243 5.243 11 C -0.074 4.074 12 C -0.072 4.072 13 N -0.262 5.262 14 C 0.070 3.930 15 C -0.546 4.546 16 H 0.080 0.920 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.725 3.275 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.202 1.202 23 C -0.063 4.063 24 C -0.074 4.074 25 C -0.042 4.042 26 C -0.166 4.166 27 C -0.154 4.154 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.133 0.867 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.049 0.951 42 H 0.009 0.991 43 H 0.047 0.953 44 H 0.071 0.929 45 H 0.049 0.951 46 H 0.102 0.898 47 H 0.062 0.938 48 H 0.088 0.912 49 H 0.100 0.900 50 H 0.049 0.951 51 H 0.118 0.882 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.719 15.457 -11.405 23.038 hybrid contribution -0.062 -0.124 1.027 1.036 sum -12.781 15.333 -10.378 22.498 Atomic orbital electron populations 1.20756 0.91670 1.02473 1.01951 1.19833 0.95662 0.93252 0.99841 1.20747 0.93257 0.97164 1.04144 1.19596 0.93497 0.94546 0.99831 1.21562 1.00261 0.93863 1.03224 1.19522 0.94518 0.92136 1.02533 1.20442 0.90973 0.88560 0.98628 0.89663 1.23149 1.01461 1.00176 1.00997 1.63257 1.18047 1.29548 1.13490 1.22224 0.87892 0.97941 0.99309 1.22050 1.00006 0.94762 0.90335 1.62269 1.16921 1.37963 1.09080 1.19678 0.94976 0.83149 0.95225 1.21117 1.43219 0.99328 0.90950 0.92038 1.24981 0.95494 0.95392 0.98694 1.69950 1.44375 1.03882 1.35622 0.86578 0.78399 0.77114 0.85422 1.20277 1.21366 1.20214 1.22080 0.89254 0.93869 1.01086 1.22315 1.00076 0.98370 0.86675 1.19910 0.92873 0.95749 0.95701 1.21403 0.99574 0.91079 1.04507 1.20959 0.93838 0.97234 1.03320 0.91517 0.91710 0.91887 0.86733 0.91384 0.92676 0.88851 0.90013 0.91934 0.92325 0.94069 0.91260 0.91171 0.95148 0.99105 0.95317 0.92889 0.95068 0.89815 0.93848 0.91174 0.89995 0.95087 0.88200 0.86532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 2 C -0.09 -0.97 5.88 -104.62 -0.62 -1.58 16 3 C -0.14 -1.49 9.33 -39.59 -0.37 -1.86 16 4 C -0.07 -0.84 5.72 -104.63 -0.60 -1.44 16 5 C -0.13 -1.16 7.86 36.01 0.28 -0.88 16 6 C -0.09 -1.08 4.83 -104.62 -0.51 -1.58 16 7 C 0.12 1.45 2.30 -68.87 -0.16 1.29 16 8 H 0.09 0.96 7.89 -51.93 -0.41 0.55 16 9 C -0.20 -2.15 5.98 37.16 0.22 -1.93 16 10 N -0.52 -7.12 0.77 -227.88 -0.18 -7.30 16 11 C 0.05 0.77 5.41 -3.76 -0.02 0.75 16 12 C 0.06 1.01 5.61 -3.77 -0.02 0.99 16 13 N -0.54 -11.40 4.70 -235.91 -1.11 -12.51 16 14 C 0.19 5.05 4.72 -4.98 -0.02 5.03 16 15 C -0.51 -14.21 8.47 -34.44 -0.29 -14.50 16 16 H 0.06 1.70 7.13 -52.48 -0.37 1.33 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 19 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 23 C 0.07 1.26 5.18 -3.77 -0.02 1.24 16 24 C 0.05 0.83 3.44 -3.77 -0.01 0.82 16 25 C -0.04 -0.56 5.22 -104.62 -0.55 -1.10 16 26 C -0.11 -1.51 8.04 36.00 0.29 -1.22 16 27 C -0.14 -1.68 9.33 -39.58 -0.37 -2.05 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 30 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.11 1.05 7.95 -52.48 -0.42 0.63 16 32 H 0.07 0.55 7.52 -51.93 -0.39 0.16 16 33 H 0.05 0.42 7.88 -51.93 -0.41 0.01 16 34 H 0.09 0.80 4.64 -51.93 -0.24 0.56 16 35 H 0.08 0.71 4.60 -51.93 -0.24 0.47 16 36 H 0.06 0.72 6.72 -51.93 -0.35 0.37 16 37 H 0.06 0.69 6.40 -51.93 -0.33 0.36 16 38 H 0.04 0.61 6.86 -51.93 -0.36 0.25 16 39 H 0.07 0.85 8.01 -51.93 -0.42 0.43 16 40 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 42 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 43 H 0.03 0.80 8.03 -51.93 -0.42 0.38 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.03 0.62 6.54 -51.93 -0.34 0.28 16 46 H 0.08 1.77 6.79 -51.93 -0.35 1.41 16 47 H 0.04 0.71 6.59 -51.93 -0.34 0.36 16 48 H 0.07 1.08 6.45 -51.93 -0.34 0.74 16 49 H 0.08 1.25 3.86 -51.93 -0.20 1.05 16 50 H 0.03 0.40 8.04 -51.93 -0.42 -0.02 16 51 H 0.10 1.43 6.01 -51.93 -0.31 1.12 16 52 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 375.32 15.07 5.66 5.66 Total: -1.00 -29.46 375.32 -11.14 -40.60 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -8.73 Total: 0.03 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -2.49 Total: -17.12 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: -0.55 Total: -45.82 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.46 -11.14 -40.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611174245.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.048 kcal (2) G-P(sol) polarization free energy of solvation -29.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds