Wall clock time and date at job start Tue Mar 31 2020 12:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38232 * 119.99993 * 2 1 4 4 C 1.38231 * 119.99916 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.00019 * 179.97438 * 4 3 2 6 6 C 1.38228 * 120.00359 * 359.97438 * 4 3 2 7 7 C 1.50700 * 120.00544 * 180.02562 * 6 4 3 8 8 H 1.08998 * 109.47079 * 277.70956 * 7 6 4 9 9 C 1.52999 * 109.47008 * 37.70388 * 7 6 4 10 10 N 1.46898 * 109.47391 * 157.70609 * 7 6 4 11 11 C 1.46963 * 110.99826 * 162.86532 * 10 7 6 12 12 C 1.53052 * 109.36029 * 183.18908 * 11 10 7 13 13 N 1.46958 * 109.36694 * 301.59976 * 12 11 10 14 14 C 1.46898 * 111.00167 * 183.19107 * 13 12 11 15 15 C 1.50694 * 109.47292 * 169.99726 * 14 13 12 16 16 H 1.08003 * 119.99904 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00633 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99309 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00529 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47258 * 59.99936 * 19 17 15 21 21 H 1.48504 * 109.46837 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46992 * 299.99782 * 19 17 15 23 23 C 1.46949 * 110.88131 * 59.31935 * 13 12 11 24 24 C 1.46958 * 111.00167 * 286.66695 * 10 7 6 25 25 C 1.38244 * 120.00020 * 0.27601 * 6 4 3 26 26 C 1.50698 * 120.00327 * 179.72932 * 25 6 4 27 27 C 1.38236 * 119.99762 * 179.97438 * 2 1 3 28 28 H 1.08992 * 109.46920 * 90.00217 * 1 2 3 29 29 H 1.09004 * 109.46740 * 210.00458 * 1 2 3 30 30 H 1.08994 * 109.47046 * 330.00119 * 1 2 3 31 31 H 1.08004 * 120.00266 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47311 * 239.38616 * 5 4 3 33 33 H 1.08999 * 109.47292 * 359.38239 * 5 4 3 34 34 H 1.09002 * 109.47576 * 119.38071 * 5 4 3 35 35 H 1.08997 * 109.47552 * 282.34366 * 9 7 6 36 36 H 1.09006 * 109.47210 * 42.34633 * 9 7 6 37 37 H 1.08996 * 109.47079 * 162.33816 * 9 7 6 38 38 H 1.08994 * 109.48566 * 63.22542 * 11 10 7 39 39 H 1.08998 * 109.50792 * 303.16649 * 11 10 7 40 40 H 1.09005 * 109.48633 * 181.63310 * 12 11 10 41 41 H 1.08996 * 109.50900 * 61.57953 * 12 11 10 42 42 H 1.08996 * 109.46901 * 289.99983 * 14 13 12 43 43 H 1.09007 * 109.46790 * 49.99915 * 14 13 12 44 44 H 0.97003 * 119.99967 * 179.97438 * 18 17 15 45 45 H 1.09005 * 109.48903 * 60.65008 * 23 13 12 46 46 H 1.09003 * 109.49382 * 180.70965 * 23 13 12 47 47 H 1.09001 * 109.48483 * 296.77977 * 24 10 7 48 48 H 1.08999 * 109.48714 * 56.81837 * 24 10 7 49 49 H 1.08999 * 109.46952 * 83.28371 * 26 25 6 50 50 H 1.09001 * 109.47039 * 203.28201 * 26 25 6 51 51 H 1.08995 * 109.46920 * 323.28076 * 26 25 6 52 52 H 1.07995 * 120.00136 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3340 2.5022 0.0000 6 6 4.2717 0.0000 0.0016 7 6 5.7787 0.0000 0.0028 8 1 6.1428 0.1374 -1.0154 9 6 6.2880 1.1416 0.8849 10 7 6.2680 -1.2812 0.5291 11 6 7.6799 -1.4898 0.1788 12 6 8.1278 -2.8666 0.6751 13 7 7.9313 -2.9481 2.1292 14 6 8.4205 -4.2293 2.6555 15 6 8.4314 -4.1824 4.1617 16 1 8.1069 -3.2902 4.6765 17 6 8.8546 -5.2788 4.8827 18 7 9.2493 -6.3655 4.2557 19 14 8.8674 -5.2209 6.7497 20 1 7.4899 -4.9747 7.2467 21 1 9.3621 -6.5161 7.2817 22 1 9.7610 -4.1256 7.2048 23 6 6.5195 -2.7395 2.4794 24 6 6.0714 -1.3628 1.9832 25 6 3.5806 -1.1972 -0.0036 26 6 4.3341 -2.5023 -0.0086 27 6 2.1982 -1.1972 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5138 31 1 1.6582 2.1325 -0.0004 32 1 4.9693 2.5546 -0.8842 33 1 3.6258 3.3307 -0.0120 34 1 4.9520 2.5654 0.8956 35 1 6.2025 2.0843 0.3445 36 1 5.6923 1.1900 1.7965 37 1 7.3321 0.9638 1.1423 38 1 8.2890 -0.7179 0.6491 39 1 7.7980 -1.4372 -0.9035 40 1 9.1827 -3.0116 0.4420 41 1 7.5373 -3.6402 0.1844 42 1 7.7647 -5.0334 2.3218 43 1 9.4316 -4.4098 2.2903 44 1 9.5475 -7.1367 4.7629 45 1 5.9102 -3.5115 2.0092 46 1 6.4016 -2.7921 3.5618 47 1 6.6623 -0.5894 2.4739 48 1 5.0167 -1.2173 2.2163 49 1 4.6193 -2.7610 1.0111 50 1 3.6984 -3.2873 -0.4183 51 1 5.2293 -2.4025 -0.6222 52 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611174245.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:48 Heat of formation + Delta-G solvation = 53.101363 kcal Electronic energy + Delta-G solvation = -27985.291083 eV Core-core repulsion = 24564.225768 eV Total energy + Delta-G solvation = -3421.065316 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.68034 -39.79615 -37.35909 -35.32386 -34.62025 -33.84201 -31.86198 -31.38768 -29.42558 -28.70080 -28.03916 -26.83402 -26.26817 -24.62064 -23.62268 -22.64770 -21.57861 -20.81122 -20.25137 -18.49272 -17.48163 -16.93418 -16.71819 -16.28049 -15.98376 -15.95722 -15.67304 -15.26082 -15.08550 -14.91481 -14.58277 -14.37124 -14.23967 -13.98263 -13.67533 -13.64009 -13.46342 -13.40861 -13.11088 -12.96076 -12.93473 -12.73616 -12.70791 -12.55214 -12.45091 -12.20922 -12.05558 -11.98905 -11.86538 -11.70345 -11.57921 -11.52923 -11.20190 -10.98160 -10.61609 -9.33116 -9.20369 -9.02827 -8.83052 -8.21060 -6.31361 0.50361 0.58862 1.39790 1.42996 1.50897 2.39418 2.83084 2.94651 3.11067 3.31939 3.79011 3.97278 3.99776 4.06042 4.13437 4.23312 4.24673 4.30883 4.38908 4.47730 4.50708 4.51312 4.58531 4.67432 4.70703 4.76791 4.83456 4.84470 4.86693 4.89799 4.91694 4.94330 4.96862 5.05891 5.07247 5.11181 5.14165 5.19045 5.24787 5.28897 5.29681 5.36087 5.48063 5.63136 5.68038 5.74134 5.79307 5.90560 6.03807 6.11515 6.18822 6.28594 6.38297 6.64926 6.84580 7.38370 8.89896 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017747 B = 0.003264 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.372854 B = 8577.234788 C = 9059.171702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.091 4.091 3 C -0.141 4.141 4 C -0.077 4.077 5 C -0.133 4.133 6 C -0.099 4.099 7 C 0.126 3.874 8 H 0.099 0.901 9 C -0.194 4.194 10 N -0.521 5.521 11 C 0.065 3.935 12 C 0.056 3.944 13 N -0.542 5.542 14 C 0.211 3.789 15 C -0.524 4.524 16 H 0.061 0.939 17 C 0.002 3.998 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.268 1.268 23 C 0.070 3.930 24 C 0.075 3.925 25 C -0.061 4.061 26 C -0.100 4.100 27 C -0.153 4.153 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.136 0.864 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.042 0.958 39 H 0.099 0.901 40 H 0.069 0.931 41 H 0.022 0.978 42 H -0.041 1.041 43 H 0.003 0.997 44 H 0.265 0.735 45 H 0.021 0.979 46 H 0.060 0.940 47 H 0.040 0.960 48 H 0.074 0.926 49 H 0.061 0.939 50 H 0.029 0.971 51 H 0.094 0.906 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.853 18.506 -11.690 25.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.091 4.091 3 C -0.159 4.159 4 C -0.077 4.077 5 C -0.188 4.188 6 C -0.100 4.100 7 C 0.018 3.982 8 H 0.117 0.883 9 C -0.251 4.251 10 N -0.245 5.245 11 C -0.063 4.063 12 C -0.073 4.073 13 N -0.267 5.267 14 C 0.085 3.915 15 C -0.562 4.562 16 H 0.079 0.921 17 C -0.196 4.196 18 N -0.575 5.575 19 Si 0.793 3.207 20 H -0.193 1.193 21 H -0.208 1.208 22 H -0.193 1.193 23 C -0.058 4.058 24 C -0.053 4.053 25 C -0.061 4.061 26 C -0.156 4.156 27 C -0.171 4.171 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.154 0.846 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.117 0.883 40 H 0.087 0.913 41 H 0.041 0.959 42 H -0.024 1.024 43 H 0.021 0.979 44 H 0.073 0.927 45 H 0.039 0.961 46 H 0.078 0.922 47 H 0.059 0.941 48 H 0.092 0.908 49 H 0.080 0.920 50 H 0.048 0.952 51 H 0.113 0.887 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.769 18.324 -11.666 25.719 hybrid contribution 0.198 -1.006 1.020 1.447 sum -13.571 17.318 -10.646 24.442 Atomic orbital electron populations 1.20796 0.89826 1.03227 1.02846 1.20169 0.97164 0.92933 0.98848 1.21084 0.93458 0.97924 1.03414 1.19906 0.93916 0.95160 0.98744 1.21595 1.00628 0.92830 1.03794 1.19626 0.94726 0.92391 1.03243 1.20491 0.90793 0.87564 0.99342 0.88294 1.23126 1.00435 1.00921 1.00653 1.63201 1.17742 1.31577 1.11948 1.22136 0.88011 0.95244 1.00869 1.22150 1.00078 0.97095 0.87962 1.62200 1.18112 1.34823 1.11536 1.19313 0.92983 0.84510 0.94738 1.21420 1.43263 0.99504 0.92036 0.92081 1.25909 0.94830 0.94850 1.04006 1.70082 1.45104 1.04613 1.37692 0.85455 0.78870 0.77434 0.78987 1.19291 1.20760 1.19275 1.22013 0.88006 0.96088 0.99697 1.21993 0.99898 0.95390 0.87999 1.19926 0.93379 0.95623 0.97161 1.21237 0.99463 0.91915 1.03020 1.21106 0.93775 0.98086 1.04100 0.90459 0.91553 0.90575 0.84613 0.90250 0.91227 0.88538 0.87381 0.92827 0.93263 0.93950 0.88279 0.91261 0.95943 1.02358 0.97854 0.92671 0.96118 0.92188 0.94144 0.90784 0.92025 0.95185 0.88728 0.86395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 10.01 71.24 0.71 -0.93 16 2 C -0.09 -1.89 5.88 -19.87 -0.12 -2.01 16 3 C -0.14 -2.73 9.33 22.27 0.21 -2.53 16 4 C -0.08 -1.53 5.72 -19.87 -0.11 -1.64 16 5 C -0.13 -1.83 7.86 71.24 0.56 -1.27 16 6 C -0.10 -2.31 4.83 -19.87 -0.10 -2.40 16 7 C 0.13 2.71 2.30 44.17 0.10 2.81 16 8 H 0.10 1.91 7.89 -2.39 -0.02 1.89 16 9 C -0.19 -3.66 5.98 71.98 0.43 -3.23 16 10 N -0.52 -13.84 0.77 -874.87 -0.68 -14.52 16 11 C 0.07 1.77 5.41 86.31 0.47 2.24 16 12 C 0.06 2.00 5.61 86.31 0.48 2.49 16 13 N -0.54 -23.87 4.70 -900.30 -4.23 -28.10 16 14 C 0.21 11.54 4.72 85.56 0.40 11.94 16 15 C -0.52 -30.28 8.47 25.60 0.22 -30.06 16 16 H 0.06 3.46 7.13 -2.91 -0.02 3.44 16 17 C 0.00 0.12 5.46 84.65 0.46 0.58 16 18 N -0.93 -57.15 13.29 21.45 0.28 -56.86 16 19 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 23 C 0.07 2.82 5.18 86.31 0.45 3.27 16 24 C 0.08 2.35 3.44 86.31 0.30 2.65 16 25 C -0.06 -1.57 5.22 -19.86 -0.10 -1.68 16 26 C -0.10 -2.81 8.04 71.24 0.57 -2.23 16 27 C -0.15 -3.69 9.33 22.27 0.21 -3.48 16 28 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 0.96 8.09 -2.39 -0.02 0.94 16 30 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 31 H 0.14 2.00 7.95 -2.91 -0.02 1.98 16 32 H 0.08 0.95 7.52 -2.39 -0.02 0.93 16 33 H 0.07 0.78 7.88 -2.39 -0.02 0.76 16 34 H 0.10 1.30 4.64 -2.39 -0.01 1.29 16 35 H 0.11 1.48 4.60 -2.39 -0.01 1.47 16 36 H 0.05 1.12 6.72 -2.38 -0.02 1.11 16 37 H 0.05 1.04 6.40 -2.39 -0.02 1.03 16 38 H 0.04 1.17 6.86 -2.39 -0.02 1.16 16 39 H 0.10 2.17 8.01 -2.39 -0.02 2.15 16 40 H 0.07 2.48 8.07 -2.38 -0.02 2.46 16 41 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 42 H -0.04 -2.47 8.12 -2.39 -0.02 -2.49 16 43 H 0.00 0.20 8.03 -2.38 -0.02 0.18 16 44 H 0.26 15.22 8.31 -92.71 -0.77 14.44 16 45 H 0.02 0.87 6.54 -2.38 -0.02 0.86 16 46 H 0.06 2.65 6.79 -2.39 -0.02 2.64 16 47 H 0.04 1.30 6.59 -2.39 -0.02 1.28 16 48 H 0.07 2.28 6.45 -2.39 -0.02 2.27 16 49 H 0.06 1.96 3.86 -2.39 -0.01 1.95 16 50 H 0.03 0.81 8.04 -2.39 -0.02 0.79 16 51 H 0.09 2.70 6.01 -2.39 -0.01 2.69 16 52 H 0.12 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -65.51 375.32 3.44 -62.07 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.90 Total: 15.99 kcal Atomic # 6 Polarization: -30.63 SS G_CDS: 5.14 Total: -25.49 kcal Atomic # 7 Polarization: -94.86 SS G_CDS: -4.62 Total: -99.48 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -65.51 3.44 -62.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611174245.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.174 kcal (2) G-P(sol) polarization free energy of solvation -65.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds