Wall clock time and date at job start Tue Mar 31 2020 12:09:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86804 * 119.99818 * 2 1
4 4 H 1.48495 * 109.47544 * 179.97438 * 3 2 1
5 5 H 1.48502 * 109.47076 * 299.99782 * 3 2 1
6 6 H 1.48500 * 109.47114 * 59.99517 * 3 2 1
7 7 C 1.37882 * 120.00655 * 179.97438 * 2 1 3
8 8 H 1.07994 * 120.00270 * 179.97438 * 7 2 1
9 9 C 1.50697 * 119.99527 * 0.02562 * 7 2 1
10 10 C 1.52997 * 109.46971 * 179.97438 * 9 7 2
11 11 C 1.53005 * 109.47109 * 180.02562 * 10 9 7
12 12 N 1.46899 * 109.46941 * 180.02562 * 11 10 9
13 13 C 1.46897 * 111.00103 * 179.97438 * 12 11 10
14 14 H 1.09003 * 109.47097 * 325.00300 * 13 12 11
15 15 C 1.52997 * 109.47615 * 205.00062 * 13 12 11
16 16 N 1.46894 * 109.47119 * 55.68072 * 15 13 12
17 17 C 1.46853 * 111.00254 * 199.93400 * 16 15 13
18 18 C 1.53041 * 109.52466 * 174.16088 * 17 16 15
19 19 C 1.53115 * 109.27784 * 59.17893 * 18 17 16
20 20 C 1.53124 * 109.16283 * 302.34517 * 19 18 17
21 21 C 1.46845 * 111.00196 * 75.72182 * 16 15 13
22 22 C 1.50703 * 109.47030 * 84.99685 * 13 12 11
23 23 C 1.38234 * 119.99732 * 39.73329 * 22 13 12
24 24 C 1.38236 * 119.99873 * 179.80782 * 23 22 13
25 25 C 1.38233 * 120.00147 * 0.39553 * 24 23 22
26 26 C 1.38239 * 119.99645 * 359.85737 * 25 24 23
27 27 C 1.38234 * 119.99995 * 220.00070 * 22 13 12
28 28 H 0.96993 * 120.00391 * 359.97438 * 1 2 3
29 29 H 1.09002 * 109.46804 * 60.00176 * 9 7 2
30 30 H 1.09001 * 109.47702 * 300.00412 * 9 7 2
31 31 H 1.09002 * 109.46918 * 60.00607 * 10 9 7
32 32 H 1.08998 * 109.47336 * 300.00126 * 10 9 7
33 33 H 1.08998 * 109.46764 * 300.00034 * 11 10 9
34 34 H 1.08993 * 109.47251 * 60.00546 * 11 10 9
35 35 H 1.00902 * 111.00002 * 303.95071 * 12 11 10
36 36 H 1.09004 * 109.47215 * 175.68130 * 15 13 12
37 37 H 1.09008 * 109.46964 * 295.68147 * 15 13 12
38 38 H 1.08999 * 109.45729 * 294.17916 * 17 16 15
39 39 H 1.08996 * 109.46042 * 54.13917 * 17 16 15
40 40 H 1.08996 * 109.49961 * 299.23926 * 18 17 16
41 41 H 1.08995 * 109.49851 * 179.12109 * 18 17 16
42 42 H 1.08999 * 109.52280 * 182.44399 * 19 18 17
43 43 H 1.08994 * 109.52543 * 62.24879 * 19 18 17
44 44 H 1.09000 * 109.49837 * 297.71532 * 20 19 18
45 45 H 1.09000 * 109.50362 * 177.59858 * 20 19 18
46 46 H 1.09000 * 109.46466 * 305.85567 * 21 16 15
47 47 H 1.08998 * 109.46333 * 65.82742 * 21 16 15
48 48 H 1.07999 * 120.00415 * 359.97438 * 23 22 13
49 49 H 1.08004 * 120.00061 * 180.22598 * 24 23 22
50 50 H 1.08000 * 120.00134 * 179.82804 * 25 24 23
51 51 H 1.08002 * 119.99572 * 179.97438 * 26 25 24
52 52 H 1.07993 * 120.00073 * 359.97438 * 27 22 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7091 1.3466 0.0006
5 1 1.8904 2.3965 -1.2125
6 1 1.8902 2.3965 1.2124
7 6 2.0047 -1.1940 0.0005
8 1 3.0846 -1.1939 0.0001
9 6 1.2512 -2.4991 0.0005
10 6 2.2455 -3.6620 0.0005
11 6 1.4806 -4.9871 -0.0001
12 7 2.4353 -6.1035 0.0005
13 6 1.7351 -7.3949 0.0005
14 1 0.8216 -7.3129 0.5896
15 6 2.6410 -8.4663 0.6107
16 7 3.0638 -8.0438 1.9526
17 6 4.2675 -8.7695 2.3780
18 6 4.7616 -8.2034 3.7112
19 6 3.6576 -8.3482 4.7622
20 6 2.3999 -7.6245 4.2730
21 6 1.9743 -8.2073 2.9235
22 6 1.3873 -7.7778 -1.4150
23 6 2.2883 -7.5409 -2.4362
24 6 1.9709 -7.8957 -3.7340
25 6 0.7493 -8.4798 -4.0118
26 6 -0.1538 -8.7119 -2.9912
27 6 0.1651 -8.3607 -1.6928
28 1 -0.4850 0.8400 0.0004
29 1 0.6250 -2.5570 -0.8897
30 1 0.6241 -2.5567 0.8902
31 1 2.8721 -3.6042 0.8906
32 1 2.8722 -3.6042 -0.8894
33 1 0.8536 -5.0450 0.8896
34 1 0.8543 -5.0446 -0.8903
35 1 3.0707 -6.0364 -0.7804
36 1 2.0947 -9.4069 0.6812
37 1 3.5190 -8.6025 -0.0208
38 1 4.0307 -9.8267 2.4977
39 1 5.0460 -8.6551 1.6238
40 1 5.0115 -7.1496 3.5887
41 1 5.6459 -8.7526 4.0343
42 1 3.9892 -7.9070 5.7021
43 1 3.4345 -9.4043 4.9131
44 1 2.6128 -6.5615 4.1594
45 1 1.5970 -7.7600 4.9975
46 1 1.0873 -7.6845 2.5656
47 1 1.7483 -9.2672 3.0407
48 1 3.2413 -7.0812 -2.2198
49 1 2.6764 -7.7140 -4.5314
50 1 0.5002 -8.7545 -5.0262
51 1 -1.1085 -9.1679 -3.2083
52 1 -0.5404 -8.5421 -0.8956
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000611938716.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:09:31
Heat of formation + Delta-G solvation = 7.576294 kcal
Electronic energy + Delta-G solvation = -26708.010933 eV
Core-core repulsion = 23284.971502 eV
Total energy + Delta-G solvation = -3423.039431 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-39.88129 -38.75529 -36.46633 -34.22889 -33.00353 -31.84027 -31.01713 -30.83643
-29.97343 -27.89434 -25.69997 -24.19502 -23.13824 -22.83255 -22.22133 -22.05058
-20.36728 -19.77245 -19.68145 -17.27023 -16.25858 -16.13086 -15.52005 -15.25376
-14.96900 -14.69235 -14.52427 -14.40645 -14.36493 -13.84332 -13.66893 -13.55186
-13.37919 -13.02094 -12.96963 -12.65175 -12.27227 -12.20942 -12.02561 -11.60432
-11.42742 -11.32583 -11.21325 -11.09320 -10.89417 -10.80539 -10.72962 -10.48450
-10.39515 -10.38365 -10.31876 -9.59683 -9.26827 -8.98959 -8.97376 -8.77910
-8.27822 -8.12550 -7.94152 -5.92996 -3.94424 1.27571 1.33395 3.35581
3.42762 3.47669 3.67320 3.89551 4.43394 4.54659 4.70021 4.78405
4.82214 4.83457 4.88936 4.93865 5.05636 5.14447 5.23535 5.28649
5.37753 5.41100 5.42887 5.48288 5.49242 5.55149 5.63250 5.70359
5.73104 5.82432 5.87294 5.92124 5.94059 5.96163 6.00979 6.09117
6.14481 6.16130 6.38390 6.39291 6.43352 6.46320 6.49306 6.85833
6.90622 6.93072 7.15278 7.19648 7.25841 7.52566 7.77149 7.80120
7.94194 8.08622 8.52420 9.13286 9.69185 11.18567
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.007911 B = 0.003742 C = 0.002748
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3538.507370 B = 7481.298027 C =10188.500015
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.897 5.897
2 C 0.055 3.945
3 Si 0.890 3.110
4 H -0.273 1.273
5 H -0.285 1.285
6 H -0.284 1.284
7 C -0.515 4.515
8 H 0.055 0.945
9 C 0.022 3.978
10 C -0.104 4.104
11 C 0.063 3.937
12 N -0.657 5.657
13 C 0.131 3.869
14 H 0.082 0.918
15 C 0.077 3.923
16 N -0.512 5.512
17 C 0.059 3.941
18 C -0.116 4.116
19 C -0.119 4.119
20 C -0.117 4.117
21 C 0.059 3.941
22 C -0.107 4.107
23 C -0.114 4.114
24 C -0.116 4.116
25 C -0.125 4.125
26 C -0.120 4.120
27 C -0.113 4.113
28 H 0.259 0.741
29 H 0.012 0.988
30 H 0.015 0.985
31 H 0.056 0.944
32 H 0.041 0.959
33 H 0.064 0.936
34 H 0.019 0.981
35 H 0.333 0.667
36 H 0.032 0.968
37 H 0.071 0.929
38 H 0.023 0.977
39 H 0.072 0.928
40 H 0.075 0.925
41 H 0.060 0.940
42 H 0.061 0.939
43 H 0.053 0.947
44 H 0.077 0.923
45 H 0.061 0.939
46 H 0.073 0.927
47 H 0.023 0.977
48 H 0.123 0.877
49 H 0.121 0.879
50 H 0.119 0.881
51 H 0.119 0.881
52 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.405 -23.925 0.733 24.338
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.537 5.537
2 C -0.145 4.145
3 Si 0.718 3.282
4 H -0.197 1.197
5 H -0.211 1.211
6 H -0.211 1.211
7 C -0.553 4.553
8 H 0.073 0.927
9 C -0.015 4.015
10 C -0.142 4.142
11 C -0.066 4.066
12 N -0.287 5.287
13 C 0.020 3.980
14 H 0.100 0.900
15 C -0.052 4.052
16 N -0.235 5.235
17 C -0.069 4.069
18 C -0.154 4.154
19 C -0.157 4.157
20 C -0.155 4.155
21 C -0.068 4.068
22 C -0.110 4.110
23 C -0.132 4.132
24 C -0.134 4.134
25 C -0.144 4.144
26 C -0.138 4.138
27 C -0.132 4.132
28 H 0.068 0.932
29 H 0.030 0.970
30 H 0.033 0.967
31 H 0.075 0.925
32 H 0.060 0.940
33 H 0.082 0.918
34 H 0.038 0.962
35 H 0.153 0.847
36 H 0.050 0.950
37 H 0.089 0.911
38 H 0.041 0.959
39 H 0.090 0.910
40 H 0.094 0.906
41 H 0.079 0.921
42 H 0.080 0.920
43 H 0.072 0.928
44 H 0.096 0.904
45 H 0.080 0.920
46 H 0.092 0.908
47 H 0.041 0.959
48 H 0.141 0.859
49 H 0.139 0.861
50 H 0.137 0.863
51 H 0.137 0.863
52 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges 4.484 -23.282 1.426 23.752
hybrid contribution -0.279 0.084 -1.037 1.077
sum 4.205 -23.197 0.389 23.579
Atomic orbital electron populations
1.69978 1.06049 1.26323 1.51354 1.25026 0.94815 0.99193 0.95504
0.86566 0.80193 0.83942 0.77492 1.19721 1.21119 1.21059 1.21310
0.93078 0.91081 1.49872 0.92655 1.19059 0.94046 0.91457 0.96962
1.21577 0.99054 0.92985 1.00557 1.22101 0.94138 0.90920 0.99410
1.60660 1.19011 0.99880 1.49158 1.20555 0.96856 0.90746 0.89842
0.90036 1.22013 0.98540 0.94449 0.90200 1.61673 1.04399 1.56581
1.00882 1.22060 0.93020 0.94453 0.97323 1.21569 0.97342 1.02419
0.94083 1.21560 0.95916 0.99879 0.98362 1.21572 0.97052 1.01442
0.95432 1.22071 0.94334 0.97793 0.92652 1.20810 0.94528 0.98488
0.97130 1.20984 0.99548 0.99961 0.92714 1.21128 0.96984 0.98742
0.96569 1.21134 0.94329 0.99849 0.99052 1.21135 0.99349 1.00240
0.93054 1.21059 0.96359 0.98982 0.96759 0.93184 0.96988 0.96668
0.92493 0.93976 0.91791 0.96233 0.84705 0.94978 0.91067 0.95908
0.91002 0.90625 0.92100 0.92050 0.92844 0.90443 0.92014 0.90830
0.95911 0.85896 0.86113 0.86321 0.86271 0.86294
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.61 13.29 55.43 0.74 -26.87 16
2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16
3 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16
4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16
5 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16
6 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16
7 C -0.51 -15.03 9.11 -34.44 -0.31 -15.34 16
8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16
9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16
10 C -0.10 -2.23 5.41 -26.73 -0.14 -2.37 16
11 C 0.06 1.13 5.48 -3.82 -0.02 1.11 16
12 N -0.66 -9.71 5.97 -107.95 -0.64 -10.36 16
13 C 0.13 1.64 2.24 -68.87 -0.15 1.48 16
14 H 0.08 1.07 6.50 -51.93 -0.34 0.74 16
15 C 0.08 0.85 4.67 -3.83 -0.02 0.84 16
16 N -0.51 -5.97 4.33 -234.67 -1.01 -6.98 16
17 C 0.06 0.61 5.43 -3.83 -0.02 0.59 16
18 C -0.12 -1.13 6.09 -26.65 -0.16 -1.29 16
19 C -0.12 -1.12 6.00 -26.61 -0.16 -1.28 16
20 C -0.12 -1.24 6.09 -26.65 -0.16 -1.41 16
21 C 0.06 0.66 5.29 -3.83 -0.02 0.64 16
22 C -0.11 -1.30 4.71 -104.62 -0.49 -1.79 16
23 C -0.11 -1.34 9.12 -39.58 -0.36 -1.70 16
24 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16
25 C -0.13 -1.31 10.05 -39.58 -0.40 -1.71 16
26 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16
27 C -0.11 -1.30 9.67 -39.58 -0.38 -1.68 16
28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16
29 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16
30 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16
31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16
32 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16
33 H 0.06 1.19 8.05 -51.93 -0.42 0.77 16
34 H 0.02 0.37 8.00 -51.93 -0.42 -0.05 16
35 H 0.33 4.77 6.34 -39.29 -0.25 4.52 16
36 H 0.03 0.34 8.00 -51.93 -0.42 -0.08 16
37 H 0.07 0.78 7.79 -51.92 -0.40 0.38 16
38 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16
39 H 0.07 0.72 7.93 -51.93 -0.41 0.31 16
40 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16
41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
43 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
44 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16
45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
46 H 0.07 0.87 6.79 -51.93 -0.35 0.52 16
47 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16
48 H 0.12 1.36 6.50 -52.49 -0.34 1.01 16
49 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16
50 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16
51 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16
52 H 0.12 1.20 8.04 -52.49 -0.42 0.78 16
LS Contribution 406.21 15.07 6.12 6.12
Total: -1.00 -31.13 406.21 -13.32 -44.44
By element:
Atomic # 1 Polarization: 11.44 SS G_CDS: -9.65 Total: 1.79 kcal
Atomic # 6 Polarization: -21.43 SS G_CDS: -3.84 Total: -25.27 kcal
Atomic # 7 Polarization: -43.29 SS G_CDS: -0.92 Total: -44.21 kcal
Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal
Total LS contribution 6.12 Total: 6.12 kcal
Total: -31.13 -13.32 -44.44 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000611938716.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 52.021 kcal
(2) G-P(sol) polarization free energy of solvation -31.128 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.893 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.317 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.444 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.576 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds