Wall clock time and date at job start Tue Mar 31 2020 12:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99818 * 2 1 4 4 H 1.48495 * 109.47544 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47076 * 299.99782 * 3 2 1 6 6 H 1.48500 * 109.47114 * 59.99517 * 3 2 1 7 7 C 1.37882 * 120.00655 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00270 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99527 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46971 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47109 * 180.02562 * 10 9 7 12 12 N 1.46899 * 109.46941 * 180.02562 * 11 10 9 13 13 C 1.46897 * 111.00103 * 179.97438 * 12 11 10 14 14 H 1.09003 * 109.47097 * 325.00300 * 13 12 11 15 15 C 1.52997 * 109.47615 * 205.00062 * 13 12 11 16 16 N 1.46894 * 109.47119 * 55.68072 * 15 13 12 17 17 C 1.46853 * 111.00254 * 199.93400 * 16 15 13 18 18 C 1.53041 * 109.52466 * 174.16088 * 17 16 15 19 19 C 1.53115 * 109.27784 * 59.17893 * 18 17 16 20 20 C 1.53124 * 109.16283 * 302.34517 * 19 18 17 21 21 C 1.46845 * 111.00196 * 75.72182 * 16 15 13 22 22 C 1.50703 * 109.47030 * 84.99685 * 13 12 11 23 23 C 1.38234 * 119.99732 * 39.73329 * 22 13 12 24 24 C 1.38236 * 119.99873 * 179.80782 * 23 22 13 25 25 C 1.38233 * 120.00147 * 0.39553 * 24 23 22 26 26 C 1.38239 * 119.99645 * 359.85737 * 25 24 23 27 27 C 1.38234 * 119.99995 * 220.00070 * 22 13 12 28 28 H 0.96993 * 120.00391 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46804 * 60.00176 * 9 7 2 30 30 H 1.09001 * 109.47702 * 300.00412 * 9 7 2 31 31 H 1.09002 * 109.46918 * 60.00607 * 10 9 7 32 32 H 1.08998 * 109.47336 * 300.00126 * 10 9 7 33 33 H 1.08998 * 109.46764 * 300.00034 * 11 10 9 34 34 H 1.08993 * 109.47251 * 60.00546 * 11 10 9 35 35 H 1.00902 * 111.00002 * 303.95071 * 12 11 10 36 36 H 1.09004 * 109.47215 * 175.68130 * 15 13 12 37 37 H 1.09008 * 109.46964 * 295.68147 * 15 13 12 38 38 H 1.08999 * 109.45729 * 294.17916 * 17 16 15 39 39 H 1.08996 * 109.46042 * 54.13917 * 17 16 15 40 40 H 1.08996 * 109.49961 * 299.23926 * 18 17 16 41 41 H 1.08995 * 109.49851 * 179.12109 * 18 17 16 42 42 H 1.08999 * 109.52280 * 182.44399 * 19 18 17 43 43 H 1.08994 * 109.52543 * 62.24879 * 19 18 17 44 44 H 1.09000 * 109.49837 * 297.71532 * 20 19 18 45 45 H 1.09000 * 109.50362 * 177.59858 * 20 19 18 46 46 H 1.09000 * 109.46466 * 305.85567 * 21 16 15 47 47 H 1.08998 * 109.46333 * 65.82742 * 21 16 15 48 48 H 1.07999 * 120.00415 * 359.97438 * 23 22 13 49 49 H 1.08004 * 120.00061 * 180.22598 * 24 23 22 50 50 H 1.08000 * 120.00134 * 179.82804 * 25 24 23 51 51 H 1.08002 * 119.99572 * 179.97438 * 26 25 24 52 52 H 1.07993 * 120.00073 * 359.97438 * 27 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8902 2.3965 1.2124 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4806 -4.9871 -0.0001 12 7 2.4353 -6.1035 0.0005 13 6 1.7351 -7.3949 0.0005 14 1 0.8216 -7.3129 0.5896 15 6 2.6410 -8.4663 0.6107 16 7 3.0638 -8.0438 1.9526 17 6 4.2675 -8.7695 2.3780 18 6 4.7616 -8.2034 3.7112 19 6 3.6576 -8.3482 4.7622 20 6 2.3999 -7.6245 4.2730 21 6 1.9743 -8.2073 2.9235 22 6 1.3873 -7.7778 -1.4150 23 6 2.2883 -7.5409 -2.4362 24 6 1.9709 -7.8957 -3.7340 25 6 0.7493 -8.4798 -4.0118 26 6 -0.1538 -8.7119 -2.9912 27 6 0.1651 -8.3607 -1.6928 28 1 -0.4850 0.8400 0.0004 29 1 0.6250 -2.5570 -0.8897 30 1 0.6241 -2.5567 0.8902 31 1 2.8721 -3.6042 0.8906 32 1 2.8722 -3.6042 -0.8894 33 1 0.8536 -5.0450 0.8896 34 1 0.8543 -5.0446 -0.8903 35 1 3.0707 -6.0364 -0.7804 36 1 2.0947 -9.4069 0.6812 37 1 3.5190 -8.6025 -0.0208 38 1 4.0307 -9.8267 2.4977 39 1 5.0460 -8.6551 1.6238 40 1 5.0115 -7.1496 3.5887 41 1 5.6459 -8.7526 4.0343 42 1 3.9892 -7.9070 5.7021 43 1 3.4345 -9.4043 4.9131 44 1 2.6128 -6.5615 4.1594 45 1 1.5970 -7.7600 4.9975 46 1 1.0873 -7.6845 2.5656 47 1 1.7483 -9.2672 3.0407 48 1 3.2413 -7.0812 -2.2198 49 1 2.6764 -7.7140 -4.5314 50 1 0.5002 -8.7545 -5.0262 51 1 -1.1085 -9.1679 -3.2083 52 1 -0.5404 -8.5421 -0.8956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611938716.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:31 Heat of formation + Delta-G solvation = 7.576294 kcal Electronic energy + Delta-G solvation = -26708.010933 eV Core-core repulsion = 23284.971502 eV Total energy + Delta-G solvation = -3423.039431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.88129 -38.75529 -36.46633 -34.22889 -33.00353 -31.84027 -31.01713 -30.83643 -29.97343 -27.89434 -25.69997 -24.19502 -23.13824 -22.83255 -22.22133 -22.05058 -20.36728 -19.77245 -19.68145 -17.27023 -16.25858 -16.13086 -15.52005 -15.25376 -14.96900 -14.69235 -14.52427 -14.40645 -14.36493 -13.84332 -13.66893 -13.55186 -13.37919 -13.02094 -12.96963 -12.65175 -12.27227 -12.20942 -12.02561 -11.60432 -11.42742 -11.32583 -11.21325 -11.09320 -10.89417 -10.80539 -10.72962 -10.48450 -10.39515 -10.38365 -10.31876 -9.59683 -9.26827 -8.98959 -8.97376 -8.77910 -8.27822 -8.12550 -7.94152 -5.92996 -3.94424 1.27571 1.33395 3.35581 3.42762 3.47669 3.67320 3.89551 4.43394 4.54659 4.70021 4.78405 4.82214 4.83457 4.88936 4.93865 5.05636 5.14447 5.23535 5.28649 5.37753 5.41100 5.42887 5.48288 5.49242 5.55149 5.63250 5.70359 5.73104 5.82432 5.87294 5.92124 5.94059 5.96163 6.00979 6.09117 6.14481 6.16130 6.38390 6.39291 6.43352 6.46320 6.49306 6.85833 6.90622 6.93072 7.15278 7.19648 7.25841 7.52566 7.77149 7.80120 7.94194 8.08622 8.52420 9.13286 9.69185 11.18567 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.007911 B = 0.003742 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3538.507370 B = 7481.298027 C =10188.500015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.104 4.104 11 C 0.063 3.937 12 N -0.657 5.657 13 C 0.131 3.869 14 H 0.082 0.918 15 C 0.077 3.923 16 N -0.512 5.512 17 C 0.059 3.941 18 C -0.116 4.116 19 C -0.119 4.119 20 C -0.117 4.117 21 C 0.059 3.941 22 C -0.107 4.107 23 C -0.114 4.114 24 C -0.116 4.116 25 C -0.125 4.125 26 C -0.120 4.120 27 C -0.113 4.113 28 H 0.259 0.741 29 H 0.012 0.988 30 H 0.015 0.985 31 H 0.056 0.944 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.019 0.981 35 H 0.333 0.667 36 H 0.032 0.968 37 H 0.071 0.929 38 H 0.023 0.977 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.073 0.927 47 H 0.023 0.977 48 H 0.123 0.877 49 H 0.121 0.879 50 H 0.119 0.881 51 H 0.119 0.881 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.405 -23.925 0.733 24.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.142 4.142 11 C -0.066 4.066 12 N -0.287 5.287 13 C 0.020 3.980 14 H 0.100 0.900 15 C -0.052 4.052 16 N -0.235 5.235 17 C -0.069 4.069 18 C -0.154 4.154 19 C -0.157 4.157 20 C -0.155 4.155 21 C -0.068 4.068 22 C -0.110 4.110 23 C -0.132 4.132 24 C -0.134 4.134 25 C -0.144 4.144 26 C -0.138 4.138 27 C -0.132 4.132 28 H 0.068 0.932 29 H 0.030 0.970 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.038 0.962 35 H 0.153 0.847 36 H 0.050 0.950 37 H 0.089 0.911 38 H 0.041 0.959 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.096 0.904 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.041 0.959 48 H 0.141 0.859 49 H 0.139 0.861 50 H 0.137 0.863 51 H 0.137 0.863 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.484 -23.282 1.426 23.752 hybrid contribution -0.279 0.084 -1.037 1.077 sum 4.205 -23.197 0.389 23.579 Atomic orbital electron populations 1.69978 1.06049 1.26323 1.51354 1.25026 0.94815 0.99193 0.95504 0.86566 0.80193 0.83942 0.77492 1.19721 1.21119 1.21059 1.21310 0.93078 0.91081 1.49872 0.92655 1.19059 0.94046 0.91457 0.96962 1.21577 0.99054 0.92985 1.00557 1.22101 0.94138 0.90920 0.99410 1.60660 1.19011 0.99880 1.49158 1.20555 0.96856 0.90746 0.89842 0.90036 1.22013 0.98540 0.94449 0.90200 1.61673 1.04399 1.56581 1.00882 1.22060 0.93020 0.94453 0.97323 1.21569 0.97342 1.02419 0.94083 1.21560 0.95916 0.99879 0.98362 1.21572 0.97052 1.01442 0.95432 1.22071 0.94334 0.97793 0.92652 1.20810 0.94528 0.98488 0.97130 1.20984 0.99548 0.99961 0.92714 1.21128 0.96984 0.98742 0.96569 1.21134 0.94329 0.99849 0.99052 1.21135 0.99349 1.00240 0.93054 1.21059 0.96359 0.98982 0.96759 0.93184 0.96988 0.96668 0.92493 0.93976 0.91791 0.96233 0.84705 0.94978 0.91067 0.95908 0.91002 0.90625 0.92100 0.92050 0.92844 0.90443 0.92014 0.90830 0.95911 0.85896 0.86113 0.86321 0.86271 0.86294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.29 55.43 0.74 -26.87 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.51 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.10 -2.23 5.41 -26.73 -0.14 -2.37 16 11 C 0.06 1.13 5.48 -3.82 -0.02 1.11 16 12 N -0.66 -9.71 5.97 -107.95 -0.64 -10.36 16 13 C 0.13 1.64 2.24 -68.87 -0.15 1.48 16 14 H 0.08 1.07 6.50 -51.93 -0.34 0.74 16 15 C 0.08 0.85 4.67 -3.83 -0.02 0.84 16 16 N -0.51 -5.97 4.33 -234.67 -1.01 -6.98 16 17 C 0.06 0.61 5.43 -3.83 -0.02 0.59 16 18 C -0.12 -1.13 6.09 -26.65 -0.16 -1.29 16 19 C -0.12 -1.12 6.00 -26.61 -0.16 -1.28 16 20 C -0.12 -1.24 6.09 -26.65 -0.16 -1.41 16 21 C 0.06 0.66 5.29 -3.83 -0.02 0.64 16 22 C -0.11 -1.30 4.71 -104.62 -0.49 -1.79 16 23 C -0.11 -1.34 9.12 -39.58 -0.36 -1.70 16 24 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 25 C -0.13 -1.31 10.05 -39.58 -0.40 -1.71 16 26 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 27 C -0.11 -1.30 9.67 -39.58 -0.38 -1.68 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 1.19 8.05 -51.93 -0.42 0.77 16 34 H 0.02 0.37 8.00 -51.93 -0.42 -0.05 16 35 H 0.33 4.77 6.34 -39.29 -0.25 4.52 16 36 H 0.03 0.34 8.00 -51.93 -0.42 -0.08 16 37 H 0.07 0.78 7.79 -51.92 -0.40 0.38 16 38 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.07 0.72 7.93 -51.93 -0.41 0.31 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.87 6.79 -51.93 -0.35 0.52 16 47 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 48 H 0.12 1.36 6.50 -52.49 -0.34 1.01 16 49 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 50 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 51 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 52 H 0.12 1.20 8.04 -52.49 -0.42 0.78 16 LS Contribution 406.21 15.07 6.12 6.12 Total: -1.00 -31.13 406.21 -13.32 -44.44 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -9.65 Total: 1.79 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: -3.84 Total: -25.27 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: -0.92 Total: -44.21 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.13 -13.32 -44.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611938716.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.021 kcal (2) G-P(sol) polarization free energy of solvation -31.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds