Wall clock time and date at job start Tue Mar 31 2020 12:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99818 * 2 1 4 4 H 1.48495 * 109.47544 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47076 * 299.99782 * 3 2 1 6 6 H 1.48500 * 109.47114 * 59.99517 * 3 2 1 7 7 C 1.37882 * 120.00655 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00270 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99527 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46971 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47109 * 180.02562 * 10 9 7 12 12 N 1.46899 * 109.46941 * 180.02562 * 11 10 9 13 13 C 1.46897 * 111.00103 * 179.97438 * 12 11 10 14 14 H 1.09003 * 109.47097 * 325.00300 * 13 12 11 15 15 C 1.52997 * 109.47615 * 205.00062 * 13 12 11 16 16 N 1.46894 * 109.47119 * 55.68072 * 15 13 12 17 17 C 1.46853 * 111.00254 * 199.93400 * 16 15 13 18 18 C 1.53041 * 109.52466 * 174.16088 * 17 16 15 19 19 C 1.53115 * 109.27784 * 59.17893 * 18 17 16 20 20 C 1.53124 * 109.16283 * 302.34517 * 19 18 17 21 21 C 1.46845 * 111.00196 * 75.72182 * 16 15 13 22 22 C 1.50703 * 109.47030 * 84.99685 * 13 12 11 23 23 C 1.38234 * 119.99732 * 39.73329 * 22 13 12 24 24 C 1.38236 * 119.99873 * 179.80782 * 23 22 13 25 25 C 1.38233 * 120.00147 * 0.39553 * 24 23 22 26 26 C 1.38239 * 119.99645 * 359.85737 * 25 24 23 27 27 C 1.38234 * 119.99995 * 220.00070 * 22 13 12 28 28 H 0.96993 * 120.00391 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46804 * 60.00176 * 9 7 2 30 30 H 1.09001 * 109.47702 * 300.00412 * 9 7 2 31 31 H 1.09002 * 109.46918 * 60.00607 * 10 9 7 32 32 H 1.08998 * 109.47336 * 300.00126 * 10 9 7 33 33 H 1.08998 * 109.46764 * 300.00034 * 11 10 9 34 34 H 1.08993 * 109.47251 * 60.00546 * 11 10 9 35 35 H 1.00902 * 111.00002 * 303.95071 * 12 11 10 36 36 H 1.09004 * 109.47215 * 175.68130 * 15 13 12 37 37 H 1.09008 * 109.46964 * 295.68147 * 15 13 12 38 38 H 1.08999 * 109.45729 * 294.17916 * 17 16 15 39 39 H 1.08996 * 109.46042 * 54.13917 * 17 16 15 40 40 H 1.08996 * 109.49961 * 299.23926 * 18 17 16 41 41 H 1.08995 * 109.49851 * 179.12109 * 18 17 16 42 42 H 1.08999 * 109.52280 * 182.44399 * 19 18 17 43 43 H 1.08994 * 109.52543 * 62.24879 * 19 18 17 44 44 H 1.09000 * 109.49837 * 297.71532 * 20 19 18 45 45 H 1.09000 * 109.50362 * 177.59858 * 20 19 18 46 46 H 1.09000 * 109.46466 * 305.85567 * 21 16 15 47 47 H 1.08998 * 109.46333 * 65.82742 * 21 16 15 48 48 H 1.07999 * 120.00415 * 359.97438 * 23 22 13 49 49 H 1.08004 * 120.00061 * 180.22598 * 24 23 22 50 50 H 1.08000 * 120.00134 * 179.82804 * 25 24 23 51 51 H 1.08002 * 119.99572 * 179.97438 * 26 25 24 52 52 H 1.07993 * 120.00073 * 359.97438 * 27 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8902 2.3965 1.2124 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4806 -4.9871 -0.0001 12 7 2.4353 -6.1035 0.0005 13 6 1.7351 -7.3949 0.0005 14 1 0.8216 -7.3129 0.5896 15 6 2.6410 -8.4663 0.6107 16 7 3.0638 -8.0438 1.9526 17 6 4.2675 -8.7695 2.3780 18 6 4.7616 -8.2034 3.7112 19 6 3.6576 -8.3482 4.7622 20 6 2.3999 -7.6245 4.2730 21 6 1.9743 -8.2073 2.9235 22 6 1.3873 -7.7778 -1.4150 23 6 2.2883 -7.5409 -2.4362 24 6 1.9709 -7.8957 -3.7340 25 6 0.7493 -8.4798 -4.0118 26 6 -0.1538 -8.7119 -2.9912 27 6 0.1651 -8.3607 -1.6928 28 1 -0.4850 0.8400 0.0004 29 1 0.6250 -2.5570 -0.8897 30 1 0.6241 -2.5567 0.8902 31 1 2.8721 -3.6042 0.8906 32 1 2.8722 -3.6042 -0.8894 33 1 0.8536 -5.0450 0.8896 34 1 0.8543 -5.0446 -0.8903 35 1 3.0707 -6.0364 -0.7804 36 1 2.0947 -9.4069 0.6812 37 1 3.5190 -8.6025 -0.0208 38 1 4.0307 -9.8267 2.4977 39 1 5.0460 -8.6551 1.6238 40 1 5.0115 -7.1496 3.5887 41 1 5.6459 -8.7526 4.0343 42 1 3.9892 -7.9070 5.7021 43 1 3.4345 -9.4043 4.9131 44 1 2.6128 -6.5615 4.1594 45 1 1.5970 -7.7600 4.9975 46 1 1.0873 -7.6845 2.5656 47 1 1.7483 -9.2672 3.0407 48 1 3.2413 -7.0812 -2.2198 49 1 2.6764 -7.7140 -4.5314 50 1 0.5002 -8.7545 -5.0262 51 1 -1.1085 -9.1679 -3.2083 52 1 -0.5404 -8.5421 -0.8956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611938716.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:31 Heat of formation + Delta-G solvation = -9.047352 kcal Electronic energy + Delta-G solvation = -26708.731788 eV Core-core repulsion = 23284.971502 eV Total energy + Delta-G solvation = -3423.760286 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.79763 -39.59057 -37.67827 -35.87897 -34.47605 -33.25743 -31.89848 -31.66323 -31.36209 -29.04913 -27.42771 -25.18793 -24.33242 -23.88385 -23.35422 -23.04462 -21.91533 -21.00958 -20.51717 -18.50394 -18.15346 -17.00103 -16.67055 -16.39254 -16.26728 -16.02447 -15.70641 -15.52649 -15.26892 -14.95454 -14.84056 -14.51038 -14.30908 -14.17185 -13.99047 -13.94406 -13.60536 -13.48426 -13.29690 -12.98375 -12.89078 -12.75020 -12.44147 -12.24099 -12.16483 -12.07067 -12.02784 -11.77099 -11.56606 -11.51163 -11.36165 -11.19279 -11.15242 -11.06285 -10.55030 -9.83912 -9.67534 -9.19572 -8.99291 -8.19064 -6.30044 0.41601 0.48564 1.40076 1.40662 1.54453 2.41840 2.81773 3.02990 3.13905 3.28278 3.79938 3.92135 3.99313 4.02644 4.07901 4.13703 4.21328 4.27512 4.32379 4.35909 4.41705 4.46855 4.52112 4.59039 4.66178 4.68016 4.72159 4.73657 4.78269 4.85460 4.91428 4.98888 5.03297 5.07673 5.12198 5.12274 5.14259 5.16674 5.27699 5.30372 5.37171 5.52557 5.55277 5.56042 5.60534 5.61682 5.77363 5.87256 6.09990 6.13858 6.27422 6.34298 6.35536 6.60152 6.86896 7.39117 8.93228 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.007911 B = 0.003742 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3538.507370 B = 7481.298027 C =10188.500015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.540 4.540 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.087 4.087 11 C 0.082 3.918 12 N -0.654 5.654 13 C 0.138 3.862 14 H 0.072 0.928 15 C 0.085 3.915 16 N -0.530 5.530 17 C 0.060 3.940 18 C -0.115 4.115 19 C -0.116 4.116 20 C -0.117 4.117 21 C 0.061 3.939 22 C -0.120 4.120 23 C -0.128 4.128 24 C -0.125 4.125 25 C -0.130 4.130 26 C -0.126 4.126 27 C -0.127 4.127 28 H 0.263 0.737 29 H -0.013 1.013 30 H -0.011 1.011 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.010 0.990 35 H 0.338 0.662 36 H 0.041 0.959 37 H 0.074 0.926 38 H 0.033 0.967 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.051 0.949 45 H 0.071 0.929 46 H 0.060 0.940 47 H 0.034 0.966 48 H 0.126 0.874 49 H 0.139 0.861 50 H 0.142 0.858 51 H 0.140 0.860 52 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.533 -24.916 0.349 25.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.578 4.578 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.125 4.125 11 C -0.047 4.047 12 N -0.285 5.285 13 C 0.027 3.973 14 H 0.090 0.910 15 C -0.044 4.044 16 N -0.254 5.254 17 C -0.068 4.068 18 C -0.152 4.152 19 C -0.153 4.153 20 C -0.155 4.155 21 C -0.067 4.067 22 C -0.122 4.122 23 C -0.146 4.146 24 C -0.143 4.143 25 C -0.148 4.148 26 C -0.144 4.144 27 C -0.145 4.145 28 H 0.072 0.928 29 H 0.005 0.995 30 H 0.008 0.992 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.028 0.972 35 H 0.158 0.842 36 H 0.060 0.940 37 H 0.093 0.907 38 H 0.051 0.949 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.078 0.922 47 H 0.052 0.948 48 H 0.144 0.856 49 H 0.156 0.844 50 H 0.160 0.840 51 H 0.158 0.842 52 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.623 -24.297 1.042 24.961 hybrid contribution -0.677 0.352 -0.942 1.212 sum 4.946 -23.945 0.101 24.451 Atomic orbital electron populations 1.70109 1.07837 1.27664 1.51899 1.25994 0.95768 1.03384 0.94714 0.85391 0.79095 0.78689 0.77831 1.18577 1.20264 1.20282 1.21716 0.93496 0.92365 1.50255 0.92295 1.18949 0.94375 0.93262 0.94436 1.21313 0.97848 0.92918 1.00421 1.21720 0.93895 0.90563 0.98519 1.60589 1.18411 0.99992 1.49487 1.20500 0.96581 0.89756 0.90448 0.91033 1.21915 0.98384 0.94059 0.90002 1.61662 1.05078 1.57493 1.01186 1.22089 0.92368 0.94801 0.97544 1.21560 0.98184 1.01403 0.94098 1.21542 0.95015 1.00381 0.98409 1.21556 0.98234 0.99999 0.95663 1.22039 0.93793 0.98224 0.92671 1.20773 0.95208 0.99516 0.96736 1.21125 0.99768 1.00467 0.93236 1.21421 0.97705 0.98462 0.96669 1.21485 0.93986 0.99120 1.00212 1.21448 1.00330 0.99880 0.92693 1.21269 0.96327 0.99228 0.97699 0.92802 0.99479 0.99237 0.92971 0.93494 0.92689 0.97191 0.84189 0.94050 0.90718 0.94918 0.90861 0.92610 0.90280 0.91450 0.91638 0.92980 0.90991 0.92176 0.94794 0.85634 0.84361 0.84029 0.84193 0.85510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.48 13.29 21.45 0.28 -58.19 16 2 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 3 Si 0.97 45.46 29.54 68.60 2.03 47.49 16 4 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.54 -32.03 9.11 25.60 0.23 -31.79 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.03 1.52 4.97 29.85 0.15 1.67 16 10 C -0.09 -3.83 5.41 30.59 0.17 -3.66 16 11 C 0.08 3.04 5.48 86.31 0.47 3.52 16 12 N -0.65 -19.47 5.97 -495.46 -2.96 -22.43 16 13 C 0.14 3.43 2.24 44.17 0.10 3.53 16 14 H 0.07 1.92 6.50 -2.39 -0.02 1.91 16 15 C 0.08 1.82 4.67 86.30 0.40 2.23 16 16 N -0.53 -12.05 4.33 -896.36 -3.88 -15.93 16 17 C 0.06 1.14 5.43 86.33 0.47 1.61 16 18 C -0.11 -2.09 6.09 30.65 0.19 -1.91 16 19 C -0.12 -2.02 6.00 30.67 0.18 -1.84 16 20 C -0.12 -2.44 6.09 30.65 0.19 -2.26 16 21 C 0.06 1.32 5.29 86.33 0.46 1.78 16 22 C -0.12 -2.86 4.71 -19.87 -0.09 -2.96 16 23 C -0.13 -2.92 9.12 22.27 0.20 -2.72 16 24 C -0.12 -2.55 10.05 22.27 0.22 -2.32 16 25 C -0.13 -2.48 10.05 22.27 0.22 -2.25 16 26 C -0.13 -2.48 10.05 22.27 0.22 -2.25 16 27 C -0.13 -2.82 9.67 22.27 0.22 -2.60 16 28 H 0.26 15.37 8.31 -92.71 -0.77 14.59 16 29 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 30 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 31 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.05 2.12 8.05 -2.39 -0.02 2.10 16 34 H 0.01 0.38 8.00 -2.39 -0.02 0.36 16 35 H 0.34 9.60 6.34 -89.69 -0.57 9.03 16 36 H 0.04 0.82 8.00 -2.39 -0.02 0.80 16 37 H 0.07 1.55 7.79 -2.38 -0.02 1.53 16 38 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.07 1.37 7.93 -2.39 -0.02 1.35 16 40 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.05 1.34 8.14 -2.39 -0.02 1.33 16 45 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.06 1.45 6.79 -2.39 -0.02 1.43 16 47 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.13 2.70 6.50 -2.91 -0.02 2.68 16 49 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 50 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 51 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 52 H 0.13 2.50 8.04 -2.91 -0.02 2.48 16 Total: -1.00 -67.18 406.21 0.23 -66.95 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.29 Total: 23.94 kcal Atomic # 6 Polarization: -46.30 SS G_CDS: 4.46 Total: -41.84 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -6.55 Total: -96.55 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -67.18 0.23 -66.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611938716.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.905 kcal (2) G-P(sol) polarization free energy of solvation -67.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds