Wall clock time and date at job start Tue Mar 31 2020 12:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00281 * 2 1 4 4 H 1.48501 * 109.47323 * 240.00159 * 3 2 1 5 5 H 1.48499 * 109.46826 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46971 * 119.99851 * 3 2 1 7 7 C 1.37885 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99984 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47017 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47025 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47045 * 180.02562 * 11 10 9 13 13 C 1.46899 * 111.00144 * 179.97438 * 12 11 10 14 14 H 1.08998 * 109.47423 * 34.99510 * 13 12 11 15 15 C 1.52999 * 109.47495 * 154.99975 * 13 12 11 16 16 N 1.46900 * 109.46628 * 304.99987 * 15 13 12 17 17 C 1.46848 * 111.00330 * 294.20852 * 16 15 13 18 18 C 1.53030 * 109.52707 * 174.16615 * 17 16 15 19 19 C 1.53119 * 109.28021 * 59.17433 * 18 17 16 20 20 C 1.53110 * 109.16417 * 302.34782 * 19 18 17 21 21 C 1.46850 * 110.99814 * 169.99961 * 16 15 13 22 22 C 1.50706 * 109.47010 * 275.00042 * 13 12 11 23 23 C 1.38234 * 120.00196 * 140.00087 * 22 13 12 24 24 C 1.38235 * 119.99814 * 179.97438 * 23 22 13 25 25 C 1.38230 * 120.00326 * 359.97438 * 24 23 22 26 26 C 1.38243 * 120.00092 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99618 * 359.97438 * 26 25 24 28 28 H 0.96998 * 119.99854 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47226 * 60.00200 * 9 7 2 30 30 H 1.09000 * 109.47493 * 300.00353 * 9 7 2 31 31 H 1.08996 * 109.46821 * 60.00446 * 10 9 7 32 32 H 1.08997 * 109.47265 * 300.00032 * 10 9 7 33 33 H 1.08990 * 109.47288 * 59.99577 * 11 10 9 34 34 H 1.09006 * 109.46781 * 299.99675 * 11 10 9 35 35 H 1.00901 * 110.99727 * 303.94919 * 12 11 10 36 36 H 1.08999 * 109.47400 * 64.99496 * 15 13 12 37 37 H 1.08996 * 109.47027 * 185.00069 * 15 13 12 38 38 H 1.09000 * 109.45772 * 294.18192 * 17 16 15 39 39 H 1.09000 * 109.46077 * 54.14252 * 17 16 15 40 40 H 1.09004 * 109.50065 * 299.23506 * 18 17 16 41 41 H 1.08997 * 109.50522 * 179.12192 * 18 17 16 42 42 H 1.08997 * 109.52319 * 182.44012 * 19 18 17 43 43 H 1.09003 * 109.52197 * 62.25835 * 19 18 17 44 44 H 1.09003 * 109.50797 * 297.71524 * 20 19 18 45 45 H 1.08998 * 109.50829 * 177.59535 * 20 19 18 46 46 H 1.09001 * 109.46071 * 305.85442 * 21 16 15 47 47 H 1.09001 * 109.46622 * 65.82191 * 21 16 15 48 48 H 1.08000 * 119.99516 * 0.24808 * 23 22 13 49 49 H 1.08000 * 119.99297 * 179.97438 * 24 23 22 50 50 H 1.08001 * 120.00350 * 179.97438 * 25 24 23 51 51 H 1.07999 * 120.00235 * 179.97438 * 26 25 24 52 52 H 1.08005 * 119.99804 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4801 -4.9872 0.0020 12 7 2.4347 -6.1037 0.0024 13 6 1.7344 -7.3950 0.0035 14 1 0.8209 -7.3135 -0.5855 15 6 2.6402 -8.4671 -0.6057 16 7 3.0761 -8.0383 -1.9414 17 6 1.9393 -7.9661 -2.8682 18 6 2.4039 -7.3795 -4.2030 19 6 3.5076 -8.2653 -4.7877 20 6 4.6587 -8.3631 -3.7828 21 6 4.1286 -8.9213 -2.4601 22 6 1.3866 -7.7766 1.4194 23 6 0.1643 -8.3592 1.6979 24 6 -0.1544 -8.7096 2.9965 25 6 0.7493 -8.4781 4.0166 26 6 1.9721 -7.8964 3.7379 27 6 2.2912 -7.5469 2.4391 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5575 -0.8880 30 1 0.6246 -2.5563 0.8919 31 1 2.8725 -3.6040 0.8909 32 1 2.8712 -3.6048 -0.8890 33 1 0.8531 -5.0450 -0.8876 34 1 0.8539 -5.0447 0.8924 35 1 3.0695 -6.0370 -0.7791 36 1 3.5122 -8.6114 0.0321 37 1 2.0900 -9.4045 -0.6866 38 1 1.5393 -8.9669 -3.0308 39 1 1.1634 -7.3299 -2.4422 40 1 2.7914 -6.3733 -4.0431 41 1 1.5633 -7.3405 -4.8957 42 1 3.8717 -7.8277 -5.7172 43 1 3.1098 -9.2610 -4.9841 44 1 5.0817 -7.3724 -3.6162 45 1 5.4290 -9.0269 -4.1753 46 1 4.9430 -8.9788 -1.7378 47 1 3.7184 -9.9177 -2.6248 48 1 -0.5397 -8.5445 0.9001 49 1 -1.1095 -9.1644 3.2141 50 1 0.5001 -8.7515 5.0312 51 1 2.6779 -7.7151 4.5349 52 1 3.2464 -7.0921 2.2215 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611938735.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:34 Heat of formation + Delta-G solvation = 5.025431 kcal Electronic energy + Delta-G solvation = -26761.353148 eV Core-core repulsion = 23338.203104 eV Total energy + Delta-G solvation = -3423.150044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.84289 -38.80638 -36.45085 -34.27973 -32.97945 -31.84607 -31.01893 -30.78486 -30.06754 -27.87745 -25.68785 -24.28147 -23.26543 -22.59580 -22.23942 -22.13343 -20.29591 -19.85985 -19.68611 -16.87887 -16.26185 -16.21172 -15.78130 -15.26599 -15.04776 -14.87035 -14.59456 -14.41838 -14.25301 -13.85474 -13.68842 -13.53412 -13.29139 -13.16079 -12.83817 -12.64082 -12.31901 -12.24698 -12.02099 -11.75447 -11.40289 -11.37356 -11.20799 -10.97639 -10.88394 -10.85961 -10.73247 -10.54112 -10.49686 -10.43189 -10.39635 -9.59431 -9.26229 -8.99664 -8.79408 -8.63177 -8.47502 -8.27252 -8.01062 -5.92746 -3.94390 1.44283 1.54285 3.38241 3.41987 3.45022 3.63136 3.92556 4.39357 4.53282 4.60628 4.67680 4.73780 4.95020 4.97097 5.03501 5.09098 5.12588 5.20657 5.24485 5.29899 5.31475 5.39554 5.42889 5.44443 5.54161 5.62936 5.67041 5.70163 5.75591 5.77762 5.87363 5.95806 5.98191 5.99888 6.05362 6.12382 6.19333 6.21558 6.46360 6.54939 6.63702 6.72003 6.85172 6.87589 6.90910 6.96633 7.12693 7.25388 7.51701 7.76744 7.90272 7.96732 8.08589 8.52183 9.12796 9.69042 11.18750 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.007964 B = 0.003764 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3514.775518 B = 7437.412983 C =10155.850340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.023 3.977 10 C -0.104 4.104 11 C 0.064 3.936 12 N -0.678 5.678 13 C 0.130 3.870 14 H 0.047 0.953 15 C 0.060 3.940 16 N -0.536 5.536 17 C 0.052 3.948 18 C -0.118 4.118 19 C -0.120 4.120 20 C -0.117 4.117 21 C 0.059 3.941 22 C -0.072 4.072 23 C -0.119 4.119 24 C -0.127 4.127 25 C -0.125 4.125 26 C -0.127 4.127 27 C -0.081 4.081 28 H 0.260 0.740 29 H 0.012 0.988 30 H 0.014 0.986 31 H 0.054 0.946 32 H 0.044 0.956 33 H 0.020 0.980 34 H 0.062 0.938 35 H 0.356 0.644 36 H 0.084 0.916 37 H 0.037 0.963 38 H 0.030 0.970 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.030 0.970 48 H 0.114 0.886 49 H 0.116 0.884 50 H 0.116 0.884 51 H 0.118 0.882 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.721 -23.854 -2.630 24.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.555 4.555 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.142 4.142 11 C -0.065 4.065 12 N -0.311 5.311 13 C 0.020 3.980 14 H 0.065 0.935 15 C -0.068 4.068 16 N -0.261 5.261 17 C -0.076 4.076 18 C -0.156 4.156 19 C -0.158 4.158 20 C -0.155 4.155 21 C -0.069 4.069 22 C -0.073 4.073 23 C -0.137 4.137 24 C -0.145 4.145 25 C -0.144 4.144 26 C -0.145 4.145 27 C -0.099 4.099 28 H 0.069 0.931 29 H 0.031 0.969 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.038 0.962 34 H 0.080 0.920 35 H 0.177 0.823 36 H 0.102 0.898 37 H 0.055 0.945 38 H 0.049 0.951 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.083 0.917 46 H 0.094 0.906 47 H 0.048 0.952 48 H 0.133 0.867 49 H 0.134 0.866 50 H 0.134 0.866 51 H 0.136 0.864 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.866 -23.255 -1.939 23.837 hybrid contribution -0.458 0.157 -0.893 1.015 sum 4.408 -23.098 -2.831 23.684 Atomic orbital electron populations 1.69962 1.06050 1.26550 1.51138 1.25024 0.94822 0.99175 0.95471 0.86675 0.79583 0.83236 0.78603 1.20290 1.21364 1.20245 1.21233 0.92998 0.91099 1.50187 0.92760 1.19049 0.94028 0.91416 0.96960 1.21578 0.99063 0.92984 1.00557 1.22094 0.94124 0.90930 0.99363 1.60495 1.19865 0.99855 1.50919 1.20321 0.95607 0.90691 0.91429 0.93501 1.22247 0.99275 0.95591 0.89673 1.61796 1.10830 1.51357 1.02129 1.22161 0.92894 0.99390 0.93162 1.21589 0.98371 1.00292 0.95368 1.21569 0.96217 0.99628 0.98390 1.21591 0.97502 1.02176 0.94259 1.22048 0.94474 0.93449 0.96879 1.19841 0.93947 0.98070 0.95423 1.21009 0.96390 0.99659 0.96680 1.21019 0.99330 1.01121 0.92995 1.21102 0.94435 0.99988 0.98833 1.21202 0.96972 0.99435 0.96922 1.21077 1.00131 0.97034 0.91701 0.93067 0.96946 0.96729 0.92745 0.93706 0.96184 0.91997 0.82268 0.89778 0.94514 0.95134 0.90605 0.90631 0.91629 0.91838 0.92624 0.90726 0.91750 0.90645 0.95224 0.86749 0.86551 0.86618 0.86368 0.85055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.63 13.29 55.43 0.74 -26.89 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.10 -2.23 5.41 -26.73 -0.14 -2.38 16 11 C 0.06 1.15 5.48 -3.82 -0.02 1.13 16 12 N -0.68 -10.08 5.55 -107.95 -0.60 -10.68 16 13 C 0.13 1.65 2.02 -68.86 -0.14 1.51 16 14 H 0.05 0.63 6.19 -51.93 -0.32 0.31 16 15 C 0.06 0.64 4.57 -3.82 -0.02 0.63 16 16 N -0.54 -5.57 3.49 -234.67 -0.82 -6.39 16 17 C 0.05 0.53 5.29 -3.84 -0.02 0.51 16 18 C -0.12 -1.15 6.09 -26.65 -0.16 -1.31 16 19 C -0.12 -1.01 6.00 -26.61 -0.16 -1.17 16 20 C -0.12 -0.98 6.09 -26.65 -0.16 -1.14 16 21 C 0.06 0.53 5.46 -3.83 -0.02 0.51 16 22 C -0.07 -0.93 4.71 -104.62 -0.49 -1.43 16 23 C -0.12 -1.45 9.67 -39.58 -0.38 -1.84 16 24 C -0.13 -1.45 10.05 -39.59 -0.40 -1.84 16 25 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 26 C -0.13 -1.53 10.05 -39.58 -0.40 -1.93 16 27 C -0.08 -1.07 9.33 -39.58 -0.37 -1.44 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.02 0.37 8.06 -51.93 -0.42 -0.05 16 34 H 0.06 1.20 8.00 -51.93 -0.42 0.79 16 35 H 0.36 5.29 7.36 -39.29 -0.29 5.00 16 36 H 0.08 0.91 7.99 -51.93 -0.41 0.49 16 37 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 38 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 0.87 6.32 -51.93 -0.33 0.55 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.08 0.64 8.02 -51.93 -0.42 0.23 16 47 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 48 H 0.11 1.24 8.04 -52.49 -0.42 0.82 16 49 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 50 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 51 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 52 H 0.13 1.76 7.72 -52.48 -0.41 1.35 16 LS Contribution 406.72 15.07 6.13 6.13 Total: -1.00 -30.54 406.72 -13.14 -43.69 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -9.73 Total: 2.38 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -3.84 Total: -25.37 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: -0.68 Total: -43.96 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -30.54 -13.14 -43.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611938735.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.713 kcal (2) G-P(sol) polarization free energy of solvation -30.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds