Wall clock time and date at job start Tue Mar 31 2020 12:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00281 * 2 1 4 4 H 1.48501 * 109.47323 * 240.00159 * 3 2 1 5 5 H 1.48499 * 109.46826 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46971 * 119.99851 * 3 2 1 7 7 C 1.37885 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99984 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47017 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47025 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47045 * 180.02562 * 11 10 9 13 13 C 1.46899 * 111.00144 * 179.97438 * 12 11 10 14 14 H 1.08998 * 109.47423 * 34.99510 * 13 12 11 15 15 C 1.52999 * 109.47495 * 154.99975 * 13 12 11 16 16 N 1.46900 * 109.46628 * 304.99987 * 15 13 12 17 17 C 1.46848 * 111.00330 * 294.20852 * 16 15 13 18 18 C 1.53030 * 109.52707 * 174.16615 * 17 16 15 19 19 C 1.53119 * 109.28021 * 59.17433 * 18 17 16 20 20 C 1.53110 * 109.16417 * 302.34782 * 19 18 17 21 21 C 1.46850 * 110.99814 * 169.99961 * 16 15 13 22 22 C 1.50706 * 109.47010 * 275.00042 * 13 12 11 23 23 C 1.38234 * 120.00196 * 140.00087 * 22 13 12 24 24 C 1.38235 * 119.99814 * 179.97438 * 23 22 13 25 25 C 1.38230 * 120.00326 * 359.97438 * 24 23 22 26 26 C 1.38243 * 120.00092 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99618 * 359.97438 * 26 25 24 28 28 H 0.96998 * 119.99854 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47226 * 60.00200 * 9 7 2 30 30 H 1.09000 * 109.47493 * 300.00353 * 9 7 2 31 31 H 1.08996 * 109.46821 * 60.00446 * 10 9 7 32 32 H 1.08997 * 109.47265 * 300.00032 * 10 9 7 33 33 H 1.08990 * 109.47288 * 59.99577 * 11 10 9 34 34 H 1.09006 * 109.46781 * 299.99675 * 11 10 9 35 35 H 1.00901 * 110.99727 * 303.94919 * 12 11 10 36 36 H 1.08999 * 109.47400 * 64.99496 * 15 13 12 37 37 H 1.08996 * 109.47027 * 185.00069 * 15 13 12 38 38 H 1.09000 * 109.45772 * 294.18192 * 17 16 15 39 39 H 1.09000 * 109.46077 * 54.14252 * 17 16 15 40 40 H 1.09004 * 109.50065 * 299.23506 * 18 17 16 41 41 H 1.08997 * 109.50522 * 179.12192 * 18 17 16 42 42 H 1.08997 * 109.52319 * 182.44012 * 19 18 17 43 43 H 1.09003 * 109.52197 * 62.25835 * 19 18 17 44 44 H 1.09003 * 109.50797 * 297.71524 * 20 19 18 45 45 H 1.08998 * 109.50829 * 177.59535 * 20 19 18 46 46 H 1.09001 * 109.46071 * 305.85442 * 21 16 15 47 47 H 1.09001 * 109.46622 * 65.82191 * 21 16 15 48 48 H 1.08000 * 119.99516 * 0.24808 * 23 22 13 49 49 H 1.08000 * 119.99297 * 179.97438 * 24 23 22 50 50 H 1.08001 * 120.00350 * 179.97438 * 25 24 23 51 51 H 1.07999 * 120.00235 * 179.97438 * 26 25 24 52 52 H 1.08005 * 119.99804 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4801 -4.9872 0.0020 12 7 2.4347 -6.1037 0.0024 13 6 1.7344 -7.3950 0.0035 14 1 0.8209 -7.3135 -0.5855 15 6 2.6402 -8.4671 -0.6057 16 7 3.0761 -8.0383 -1.9414 17 6 1.9393 -7.9661 -2.8682 18 6 2.4039 -7.3795 -4.2030 19 6 3.5076 -8.2653 -4.7877 20 6 4.6587 -8.3631 -3.7828 21 6 4.1286 -8.9213 -2.4601 22 6 1.3866 -7.7766 1.4194 23 6 0.1643 -8.3592 1.6979 24 6 -0.1544 -8.7096 2.9965 25 6 0.7493 -8.4781 4.0166 26 6 1.9721 -7.8964 3.7379 27 6 2.2912 -7.5469 2.4391 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5575 -0.8880 30 1 0.6246 -2.5563 0.8919 31 1 2.8725 -3.6040 0.8909 32 1 2.8712 -3.6048 -0.8890 33 1 0.8531 -5.0450 -0.8876 34 1 0.8539 -5.0447 0.8924 35 1 3.0695 -6.0370 -0.7791 36 1 3.5122 -8.6114 0.0321 37 1 2.0900 -9.4045 -0.6866 38 1 1.5393 -8.9669 -3.0308 39 1 1.1634 -7.3299 -2.4422 40 1 2.7914 -6.3733 -4.0431 41 1 1.5633 -7.3405 -4.8957 42 1 3.8717 -7.8277 -5.7172 43 1 3.1098 -9.2610 -4.9841 44 1 5.0817 -7.3724 -3.6162 45 1 5.4290 -9.0269 -4.1753 46 1 4.9430 -8.9788 -1.7378 47 1 3.7184 -9.9177 -2.6248 48 1 -0.5397 -8.5445 0.9001 49 1 -1.1095 -9.1644 3.2141 50 1 0.5001 -8.7515 5.0312 51 1 2.6779 -7.7151 4.5349 52 1 3.2464 -7.0921 2.2215 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611938735.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:33 Heat of formation + Delta-G solvation = -10.372238 kcal Electronic energy + Delta-G solvation = -26762.020841 eV Core-core repulsion = 23338.203104 eV Total energy + Delta-G solvation = -3423.817737 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.76589 -39.64010 -37.67278 -35.90096 -34.48071 -33.21053 -31.77486 -31.76472 -31.47798 -29.06102 -27.38717 -25.27954 -24.16760 -24.00766 -23.31031 -23.10482 -21.89860 -20.96590 -20.55588 -18.46939 -17.80358 -17.04768 -16.90809 -16.57622 -16.32533 -15.97804 -15.76241 -15.57453 -15.34172 -14.86060 -14.81017 -14.47638 -14.29234 -14.16860 -14.09530 -13.91242 -13.56780 -13.44684 -13.34299 -13.02935 -12.91419 -12.72614 -12.44551 -12.32173 -12.20987 -12.12916 -11.85592 -11.75837 -11.60967 -11.50840 -11.36910 -11.26493 -11.21806 -11.08466 -10.54053 -9.72711 -9.55830 -9.36520 -9.23234 -8.18820 -6.30055 0.50988 0.60731 1.40124 1.43872 1.51710 2.42007 2.79831 3.01208 3.14013 3.25167 3.84756 3.90919 3.96950 4.00772 4.09161 4.15168 4.24463 4.27253 4.28628 4.35412 4.37943 4.43514 4.49965 4.51860 4.61577 4.67626 4.72482 4.74876 4.79820 4.83620 4.90610 4.92147 5.01568 5.05403 5.08952 5.13291 5.17520 5.24529 5.26351 5.27644 5.31551 5.48597 5.52610 5.63854 5.71221 5.75769 5.77643 5.86645 6.04406 6.14186 6.19727 6.21472 6.30583 6.67885 6.86395 7.38996 8.93100 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.007964 B = 0.003764 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3514.775518 B = 7437.412983 C =10155.850340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.028 3.972 10 C -0.087 4.087 11 C 0.082 3.918 12 N -0.671 5.671 13 C 0.135 3.865 14 H 0.040 0.960 15 C 0.071 3.929 16 N -0.547 5.547 17 C 0.054 3.946 18 C -0.118 4.118 19 C -0.117 4.117 20 C -0.115 4.115 21 C 0.059 3.941 22 C -0.086 4.086 23 C -0.131 4.131 24 C -0.131 4.131 25 C -0.130 4.130 26 C -0.136 4.136 27 C -0.098 4.098 28 H 0.263 0.737 29 H -0.011 1.011 30 H -0.013 1.013 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.015 0.985 34 H 0.048 0.952 35 H 0.357 0.643 36 H 0.085 0.915 37 H 0.045 0.955 38 H 0.038 0.962 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.037 0.963 48 H 0.124 0.876 49 H 0.139 0.861 50 H 0.140 0.860 51 H 0.134 0.866 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.779 -24.809 -2.601 25.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.010 4.010 10 C -0.125 4.125 11 C -0.047 4.047 12 N -0.305 5.305 13 C 0.025 3.975 14 H 0.058 0.942 15 C -0.057 4.057 16 N -0.272 5.272 17 C -0.074 4.074 18 C -0.156 4.156 19 C -0.154 4.154 20 C -0.153 4.153 21 C -0.068 4.068 22 C -0.087 4.087 23 C -0.150 4.150 24 C -0.148 4.148 25 C -0.148 4.148 26 C -0.154 4.154 27 C -0.116 4.116 28 H 0.072 0.928 29 H 0.007 0.993 30 H 0.005 0.995 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.033 0.967 34 H 0.066 0.934 35 H 0.179 0.821 36 H 0.103 0.897 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.100 0.900 46 H 0.098 0.902 47 H 0.055 0.945 48 H 0.142 0.858 49 H 0.157 0.843 50 H 0.158 0.842 51 H 0.152 0.848 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.940 -24.233 -1.913 25.023 hybrid contribution -0.837 0.412 -0.877 1.280 sum 5.102 -23.821 -2.790 24.521 Atomic orbital electron populations 1.70101 1.07857 1.27804 1.51724 1.25999 0.95768 1.03394 0.94665 0.85493 0.78283 0.77990 0.79243 1.19056 1.20730 1.19174 1.21659 0.93509 0.92348 1.50540 0.92240 1.18940 0.94359 0.93251 0.94415 1.21316 0.97865 0.92839 1.00493 1.21720 0.93906 0.90632 0.98459 1.60400 1.19159 0.99968 1.50970 1.20314 0.95557 0.89892 0.91738 0.94173 1.22108 0.98876 0.94954 0.89778 1.61784 1.11192 1.52175 1.02048 1.22108 0.92555 0.99428 0.93277 1.21578 0.99116 0.99549 0.95354 1.21551 0.95675 0.99719 0.98504 1.21584 0.97843 1.01827 0.94037 1.22100 0.94049 0.93445 0.97217 1.19921 0.94560 0.98864 0.95368 1.21227 0.96287 0.99813 0.97648 1.21354 1.00297 1.00581 0.92614 1.21440 0.93985 0.99254 1.00082 1.21461 0.97790 0.99237 0.96869 1.21120 1.00062 0.97936 0.92507 0.92790 0.99307 0.99476 0.93074 0.93233 0.96659 0.93381 0.82110 0.89687 0.93675 0.94339 0.92317 0.92539 0.91065 0.91240 0.91731 0.92048 0.89993 0.90210 0.94493 0.85778 0.84310 0.84226 0.84822 0.85847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.53 13.29 21.45 0.28 -58.24 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 3 Si 0.97 45.38 29.54 68.60 2.03 47.41 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.54 -32.14 9.11 25.60 0.23 -31.90 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.56 4.97 29.85 0.15 1.70 16 10 C -0.09 -3.84 5.41 30.60 0.17 -3.67 16 11 C 0.08 3.07 5.48 86.31 0.47 3.54 16 12 N -0.67 -20.19 5.55 -495.45 -2.75 -22.94 16 13 C 0.14 3.43 2.02 44.17 0.09 3.52 16 14 H 0.04 1.09 6.19 -2.39 -0.01 1.07 16 15 C 0.07 1.46 4.57 86.30 0.39 1.86 16 16 N -0.55 -10.97 3.49 -896.36 -3.12 -14.10 16 17 C 0.05 1.09 5.29 86.32 0.46 1.55 16 18 C -0.12 -2.24 6.09 30.64 0.19 -2.05 16 19 C -0.12 -1.79 6.00 30.67 0.18 -1.60 16 20 C -0.12 -1.75 6.09 30.65 0.19 -1.56 16 21 C 0.06 0.97 5.46 86.33 0.47 1.44 16 22 C -0.09 -2.23 4.71 -19.86 -0.09 -2.32 16 23 C -0.13 -3.12 9.67 22.27 0.22 -2.90 16 24 C -0.13 -2.78 10.05 22.27 0.22 -2.56 16 25 C -0.13 -2.72 10.05 22.27 0.22 -2.50 16 26 C -0.14 -3.13 10.05 22.27 0.22 -2.91 16 27 C -0.10 -2.56 9.33 22.27 0.21 -2.35 16 28 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 29 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 30 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 31 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.02 0.58 8.06 -2.39 -0.02 0.56 16 34 H 0.05 1.93 8.00 -2.38 -0.02 1.91 16 35 H 0.36 10.65 7.36 -89.69 -0.66 9.99 16 36 H 0.08 1.76 7.99 -2.39 -0.02 1.74 16 37 H 0.05 0.87 8.12 -2.39 -0.02 0.85 16 38 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.06 1.37 6.32 -2.39 -0.02 1.36 16 40 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.08 1.24 8.02 -2.39 -0.02 1.22 16 47 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.12 2.60 8.04 -2.91 -0.02 2.58 16 49 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 50 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 51 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 52 H 0.12 3.33 7.72 -2.91 -0.02 3.31 16 Total: -1.00 -66.01 406.72 1.08 -64.93 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 0.19 Total: 25.25 kcal Atomic # 6 Polarization: -46.76 SS G_CDS: 4.45 Total: -42.30 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -5.59 Total: -95.28 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -66.01 1.08 -64.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611938735.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.557 kcal (2) G-P(sol) polarization free energy of solvation -66.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds