Wall clock time and date at job start Tue Mar 31 2020 11:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47142 * 2 1 4 4 N 1.46905 * 109.47167 * 120.00579 * 2 1 3 5 5 C 1.46903 * 110.99756 * 275.00089 * 4 2 1 6 6 C 1.53049 * 109.45633 * 275.06740 * 5 4 2 7 7 C 1.53198 * 109.31000 * 178.61402 * 6 5 4 8 8 N 1.46925 * 108.77239 * 54.63377 * 7 6 5 9 9 C 1.36940 * 120.62624 * 126.37113 * 8 7 6 10 10 H 1.07999 * 119.99933 * 331.86142 * 9 8 7 11 11 C 1.38810 * 119.99728 * 151.86084 * 9 8 7 12 12 N 1.31614 * 120.00173 * 343.05889 * 11 9 8 13 13 Si 1.86802 * 119.99779 * 163.06266 * 11 9 8 14 14 H 1.48502 * 109.47145 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47294 * 120.00090 * 13 11 9 16 16 H 1.48507 * 109.47098 * 239.99842 * 13 11 9 17 17 C 1.46921 * 118.74127 * 306.38568 * 8 7 6 18 18 C 1.53035 * 109.46260 * 155.00014 * 5 4 2 19 19 C 1.52998 * 109.47132 * 240.00230 * 2 1 3 20 20 C 1.53003 * 109.47132 * 180.02562 * 19 2 1 21 21 C 1.53001 * 109.46866 * 179.97438 * 20 19 2 22 22 C 1.53002 * 109.46828 * 60.00585 * 21 20 19 23 23 F 1.39910 * 109.46953 * 179.97438 * 22 21 20 24 24 F 1.39892 * 109.47528 * 59.99855 * 22 21 20 25 25 C 1.52996 * 109.47039 * 299.99134 * 22 21 20 26 26 C 1.53002 * 109.47034 * 60.00010 * 19 2 1 27 27 H 1.08997 * 109.46722 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46877 * 59.99657 * 1 2 3 29 29 H 1.09001 * 109.46958 * 299.99762 * 1 2 3 30 30 H 1.00897 * 110.99765 * 38.95095 * 4 2 1 31 31 H 1.09002 * 109.45942 * 35.01972 * 5 4 2 32 32 H 1.08994 * 109.49882 * 298.56766 * 6 5 4 33 33 H 1.08998 * 109.49761 * 58.66342 * 6 5 4 34 34 H 1.09002 * 109.58746 * 294.84777 * 7 6 5 35 35 H 1.08999 * 109.70098 * 174.49175 * 7 6 5 36 36 H 0.97001 * 119.99924 * 179.97438 * 12 11 9 37 37 H 1.08994 * 109.59152 * 293.82498 * 17 8 7 38 38 H 1.09001 * 109.70389 * 173.46624 * 17 8 7 39 39 H 1.09005 * 109.49607 * 301.33651 * 18 5 4 40 40 H 1.09001 * 109.49451 * 61.39448 * 18 5 4 41 41 H 1.09006 * 109.47399 * 299.99854 * 19 2 1 42 42 H 1.08995 * 109.47142 * 299.99770 * 20 19 2 43 43 H 1.09001 * 109.47286 * 60.00461 * 20 19 2 44 44 H 1.08994 * 109.47951 * 300.00211 * 21 20 19 45 45 H 1.09004 * 109.46722 * 179.97438 * 21 20 19 46 46 H 1.09002 * 109.47708 * 300.00255 * 25 22 21 47 47 H 1.09001 * 109.47732 * 180.02562 * 25 22 21 48 48 H 1.08998 * 109.47057 * 300.00090 * 26 19 2 49 49 H 1.08995 * 109.47352 * 60.00162 * 26 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2224 2.3469 6 6 3.4109 0.9820 2.3212 7 6 3.4582 1.9600 3.4994 8 7 3.2126 1.2155 4.7421 9 6 4.0901 1.2986 5.7901 10 1 5.1343 1.5033 5.6051 11 6 3.6375 1.1197 7.0901 12 7 2.3513 1.2032 7.3564 13 14 4.8540 0.7605 8.4614 14 1 6.2298 0.7176 7.9041 15 1 4.7693 1.8278 9.4904 16 1 4.5299 -0.5502 9.0799 17 6 2.0080 0.3799 4.8387 18 6 1.9770 -0.5804 3.6456 19 6 2.0400 -0.7212 -1.2493 20 6 3.5700 -0.7217 -1.2489 21 6 4.0800 -1.4435 -2.4979 22 6 3.5706 -0.7222 -3.7474 23 9 4.0373 -1.3819 -4.8895 24 9 4.0374 0.5965 -3.7476 25 6 2.0406 -0.7217 -3.7478 26 6 1.5300 0.0001 -2.4985 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 1.4496 -1.4980 1.4099 31 1 1.2573 0.9324 2.2908 32 1 4.2361 0.2746 2.4022 33 1 3.4957 1.5350 1.3858 34 1 2.6897 2.7225 3.3724 35 1 4.4389 2.4335 3.5448 36 1 2.0350 1.0778 8.2648 37 1 1.1214 1.0136 4.8210 38 1 2.0304 -0.1912 5.7669 39 1 1.0413 -1.1394 3.6527 40 1 2.8154 -1.2736 3.7138 41 1 1.6767 -1.7489 -1.2493 42 1 3.9337 0.3057 -1.2487 43 1 3.9330 -1.2360 -0.3590 44 1 3.7163 -2.4710 -2.4979 45 1 5.1700 -1.4435 -2.4979 46 1 1.6768 -1.7492 -3.7477 47 1 1.6776 -0.2083 -4.6381 48 1 0.4400 0.0001 -2.4984 49 1 1.8933 1.0278 -2.4985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616092020.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:14 Heat of formation + Delta-G solvation = -107.878622 kcal Electronic energy + Delta-G solvation = -28051.054624 eV Core-core repulsion = 24068.779162 eV Total energy + Delta-G solvation = -3982.275461 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.202 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.12039 -47.10789 -39.23020 -37.60422 -35.33049 -32.85543 -31.47050 -30.97674 -29.79583 -28.92560 -27.87681 -24.74648 -23.55856 -23.08447 -22.24035 -21.44835 -20.48789 -20.04508 -19.02190 -17.55214 -17.02815 -16.72651 -16.41613 -15.33949 -15.18785 -14.77331 -14.53989 -14.33234 -13.93844 -13.87360 -13.60317 -13.48004 -13.41258 -13.32930 -13.14443 -12.91870 -12.70594 -12.44357 -12.27731 -12.18948 -11.97553 -11.72759 -11.41583 -11.35271 -11.31018 -11.06814 -10.78383 -10.71569 -10.62216 -10.53169 -10.31285 -10.19600 -10.14992 -9.89616 -9.56637 -9.41476 -8.45909 -8.12067 -6.64939 -5.77504 -3.19364 3.38000 3.46062 3.48624 3.58010 3.88675 4.06121 4.15938 4.29756 4.51470 4.65595 4.81376 4.87429 4.97747 5.08656 5.16047 5.20371 5.31937 5.37460 5.39186 5.46940 5.48710 5.55738 5.57468 5.64122 5.69671 5.76898 5.82229 5.83513 5.92502 5.97476 6.13207 6.18477 6.24572 6.33335 6.36992 6.53317 6.59100 6.66110 6.68901 6.85375 7.06598 7.38475 7.39505 7.64438 7.68591 7.82065 8.47194 9.23474 9.87143 10.44017 11.31206 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.025768 B = 0.002733 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.378907 B =10242.187961 C =10791.128513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.088 3.912 3 H 0.078 0.922 4 N -0.681 5.681 5 C 0.098 3.902 6 C -0.115 4.115 7 C 0.144 3.856 8 N -0.592 5.592 9 C -0.249 4.249 10 H 0.066 0.934 11 C 0.000 4.000 12 N -0.904 5.904 13 Si 0.901 3.099 14 H -0.277 1.277 15 H -0.291 1.291 16 H -0.289 1.289 17 C 0.174 3.826 18 C -0.140 4.140 19 C -0.076 4.076 20 C -0.105 4.105 21 C -0.158 4.158 22 C 0.285 3.715 23 F -0.208 7.208 24 F -0.200 7.200 25 C -0.155 4.155 26 C -0.118 4.118 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.335 0.665 31 H 0.035 0.965 32 H 0.063 0.937 33 H 0.045 0.955 34 H 0.013 0.987 35 H 0.053 0.947 36 H 0.252 0.748 37 H 0.014 0.986 38 H 0.087 0.913 39 H 0.043 0.957 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.084 0.916 46 H 0.092 0.908 47 H 0.083 0.917 48 H 0.078 0.922 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.471 -5.721 -21.491 22.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.022 4.022 3 H 0.096 0.904 4 N -0.311 5.311 5 C -0.011 4.011 6 C -0.155 4.155 7 C 0.017 3.983 8 N -0.314 5.314 9 C -0.379 4.379 10 H 0.083 0.917 11 C -0.198 4.198 12 N -0.549 5.549 13 Si 0.731 3.269 14 H -0.202 1.202 15 H -0.218 1.218 16 H -0.216 1.216 17 C 0.048 3.952 18 C -0.180 4.180 19 C -0.095 4.095 20 C -0.142 4.142 21 C -0.196 4.196 22 C 0.249 3.751 23 F -0.189 7.189 24 F -0.181 7.181 25 C -0.193 4.193 26 C -0.156 4.156 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.154 0.846 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.031 0.969 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.033 0.967 38 H 0.106 0.894 39 H 0.062 0.938 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.113 0.887 44 H 0.109 0.891 45 H 0.102 0.898 46 H 0.110 0.890 47 H 0.102 0.898 48 H 0.096 0.904 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.839 -5.626 -21.505 22.409 hybrid contribution -0.392 -0.030 0.745 0.842 sum -3.232 -5.656 -20.760 21.758 Atomic orbital electron populations 1.22567 0.97635 1.01904 1.02194 1.21546 0.92066 0.98233 0.90355 0.90373 1.60678 1.56647 1.09848 1.03964 1.21446 0.97133 0.93432 0.89106 1.22001 0.96949 0.98660 0.97922 1.20927 0.98466 0.92303 0.86574 1.44050 1.25324 1.50145 1.11926 1.19240 0.89519 1.44186 0.84909 0.91672 1.25040 0.95880 1.01549 0.97308 1.70039 1.12673 1.53088 1.19130 0.86238 0.80819 0.77653 0.82180 1.20225 1.21781 1.21596 1.20715 0.88047 0.91160 0.95302 1.22387 1.00013 0.99380 0.96206 1.21178 0.95582 0.99626 0.93144 1.21459 0.94921 1.01347 0.96507 1.22572 1.02817 1.00857 0.93342 1.21220 0.93758 0.75922 0.84157 1.92994 1.90598 1.81098 1.54225 1.92989 1.90441 1.37832 1.96825 1.22496 0.91683 1.04045 1.01055 1.21671 1.01334 1.00008 0.92566 0.92618 0.92150 0.92497 0.84649 0.94685 0.91840 0.93643 0.96916 0.92809 0.93755 0.96744 0.89436 0.93789 0.91914 0.90985 0.91383 0.88674 0.89106 0.89761 0.88984 0.89844 0.90374 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 8.79 37.16 0.33 -1.42 16 2 C 0.09 0.93 1.98 -67.71 -0.13 0.79 16 3 H 0.08 0.94 7.10 -51.93 -0.37 0.57 16 4 N -0.68 -8.54 5.29 -99.69 -0.53 -9.07 16 5 C 0.10 1.56 2.27 -67.67 -0.15 1.41 16 6 C -0.12 -2.01 5.57 -26.60 -0.15 -2.15 16 7 C 0.14 3.04 6.52 -3.71 -0.02 3.01 16 8 N -0.59 -14.81 2.99 -172.32 -0.52 -15.32 16 9 C -0.25 -6.85 9.58 -15.06 -0.14 -7.00 16 10 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 11 C 0.00 0.01 4.92 -17.43 -0.09 -0.07 16 12 N -0.90 -26.25 11.19 55.49 0.62 -25.63 16 13 Si 0.90 21.72 29.59 -169.99 -5.03 16.69 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 C 0.17 4.10 5.30 -3.71 -0.02 4.08 16 18 C -0.14 -2.58 5.36 -26.61 -0.14 -2.72 16 19 C -0.08 -0.67 1.96 -90.62 -0.18 -0.85 16 20 C -0.10 -1.02 4.92 -26.73 -0.13 -1.15 16 21 C -0.16 -1.39 5.45 -26.73 -0.15 -1.54 16 22 C 0.29 2.76 2.10 -26.73 -0.06 2.70 16 23 F -0.21 -2.29 17.06 2.25 0.04 -2.25 16 24 F -0.20 -2.34 16.03 2.25 0.04 -2.30 16 25 C -0.15 -1.17 5.45 -26.71 -0.15 -1.32 16 26 C -0.12 -0.92 4.73 -26.70 -0.13 -1.04 16 27 H 0.05 0.49 8.13 -51.93 -0.42 0.07 16 28 H 0.06 0.50 6.43 -51.93 -0.33 0.16 16 29 H 0.06 0.63 7.43 -51.93 -0.39 0.24 16 30 H 0.34 3.98 8.07 -39.29 -0.32 3.67 16 31 H 0.04 0.59 7.11 -51.93 -0.37 0.22 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.04 0.71 7.41 -51.93 -0.38 0.32 16 34 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 36 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 37 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 2.32 6.06 -51.93 -0.31 2.01 16 39 H 0.04 0.72 8.10 -51.93 -0.42 0.30 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.75 7.80 -51.93 -0.41 0.34 16 43 H 0.09 1.05 7.60 -51.93 -0.39 0.65 16 44 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.08 0.53 6.43 -51.93 -0.33 0.19 16 49 H 0.07 0.64 7.80 -51.93 -0.41 0.23 16 LS Contribution 371.28 15.07 5.60 5.60 Total: -1.00 -29.01 371.28 -9.71 -38.72 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -8.62 Total: 0.83 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -1.31 Total: -7.26 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -0.42 Total: -50.02 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.07 Total: -4.56 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.01 -9.71 -38.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616092020.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.158 kcal (2) G-P(sol) polarization free energy of solvation -29.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds