Wall clock time and date at job start Tue Mar 31 2020 11:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47142 * 2 1 4 4 N 1.46905 * 109.47167 * 120.00579 * 2 1 3 5 5 C 1.46903 * 110.99756 * 275.00089 * 4 2 1 6 6 C 1.53049 * 109.45633 * 275.06740 * 5 4 2 7 7 C 1.53198 * 109.31000 * 178.61402 * 6 5 4 8 8 N 1.46925 * 108.77239 * 54.63377 * 7 6 5 9 9 C 1.36940 * 120.62624 * 126.37113 * 8 7 6 10 10 H 1.07999 * 119.99933 * 331.86142 * 9 8 7 11 11 C 1.38810 * 119.99728 * 151.86084 * 9 8 7 12 12 N 1.31614 * 120.00173 * 343.05889 * 11 9 8 13 13 Si 1.86802 * 119.99779 * 163.06266 * 11 9 8 14 14 H 1.48502 * 109.47145 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47294 * 120.00090 * 13 11 9 16 16 H 1.48507 * 109.47098 * 239.99842 * 13 11 9 17 17 C 1.46921 * 118.74127 * 306.38568 * 8 7 6 18 18 C 1.53035 * 109.46260 * 155.00014 * 5 4 2 19 19 C 1.52998 * 109.47132 * 240.00230 * 2 1 3 20 20 C 1.53003 * 109.47132 * 180.02562 * 19 2 1 21 21 C 1.53001 * 109.46866 * 179.97438 * 20 19 2 22 22 C 1.53002 * 109.46828 * 60.00585 * 21 20 19 23 23 F 1.39910 * 109.46953 * 179.97438 * 22 21 20 24 24 F 1.39892 * 109.47528 * 59.99855 * 22 21 20 25 25 C 1.52996 * 109.47039 * 299.99134 * 22 21 20 26 26 C 1.53002 * 109.47034 * 60.00010 * 19 2 1 27 27 H 1.08997 * 109.46722 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46877 * 59.99657 * 1 2 3 29 29 H 1.09001 * 109.46958 * 299.99762 * 1 2 3 30 30 H 1.00897 * 110.99765 * 38.95095 * 4 2 1 31 31 H 1.09002 * 109.45942 * 35.01972 * 5 4 2 32 32 H 1.08994 * 109.49882 * 298.56766 * 6 5 4 33 33 H 1.08998 * 109.49761 * 58.66342 * 6 5 4 34 34 H 1.09002 * 109.58746 * 294.84777 * 7 6 5 35 35 H 1.08999 * 109.70098 * 174.49175 * 7 6 5 36 36 H 0.97001 * 119.99924 * 179.97438 * 12 11 9 37 37 H 1.08994 * 109.59152 * 293.82498 * 17 8 7 38 38 H 1.09001 * 109.70389 * 173.46624 * 17 8 7 39 39 H 1.09005 * 109.49607 * 301.33651 * 18 5 4 40 40 H 1.09001 * 109.49451 * 61.39448 * 18 5 4 41 41 H 1.09006 * 109.47399 * 299.99854 * 19 2 1 42 42 H 1.08995 * 109.47142 * 299.99770 * 20 19 2 43 43 H 1.09001 * 109.47286 * 60.00461 * 20 19 2 44 44 H 1.08994 * 109.47951 * 300.00211 * 21 20 19 45 45 H 1.09004 * 109.46722 * 179.97438 * 21 20 19 46 46 H 1.09002 * 109.47708 * 300.00255 * 25 22 21 47 47 H 1.09001 * 109.47732 * 180.02562 * 25 22 21 48 48 H 1.08998 * 109.47057 * 300.00090 * 26 19 2 49 49 H 1.08995 * 109.47352 * 60.00162 * 26 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2224 2.3469 6 6 3.4109 0.9820 2.3212 7 6 3.4582 1.9600 3.4994 8 7 3.2126 1.2155 4.7421 9 6 4.0901 1.2986 5.7901 10 1 5.1343 1.5033 5.6051 11 6 3.6375 1.1197 7.0901 12 7 2.3513 1.2032 7.3564 13 14 4.8540 0.7605 8.4614 14 1 6.2298 0.7176 7.9041 15 1 4.7693 1.8278 9.4904 16 1 4.5299 -0.5502 9.0799 17 6 2.0080 0.3799 4.8387 18 6 1.9770 -0.5804 3.6456 19 6 2.0400 -0.7212 -1.2493 20 6 3.5700 -0.7217 -1.2489 21 6 4.0800 -1.4435 -2.4979 22 6 3.5706 -0.7222 -3.7474 23 9 4.0373 -1.3819 -4.8895 24 9 4.0374 0.5965 -3.7476 25 6 2.0406 -0.7217 -3.7478 26 6 1.5300 0.0001 -2.4985 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 1.4496 -1.4980 1.4099 31 1 1.2573 0.9324 2.2908 32 1 4.2361 0.2746 2.4022 33 1 3.4957 1.5350 1.3858 34 1 2.6897 2.7225 3.3724 35 1 4.4389 2.4335 3.5448 36 1 2.0350 1.0778 8.2648 37 1 1.1214 1.0136 4.8210 38 1 2.0304 -0.1912 5.7669 39 1 1.0413 -1.1394 3.6527 40 1 2.8154 -1.2736 3.7138 41 1 1.6767 -1.7489 -1.2493 42 1 3.9337 0.3057 -1.2487 43 1 3.9330 -1.2360 -0.3590 44 1 3.7163 -2.4710 -2.4979 45 1 5.1700 -1.4435 -2.4979 46 1 1.6768 -1.7492 -3.7477 47 1 1.6776 -0.2083 -4.6381 48 1 0.4400 0.0001 -2.4984 49 1 1.8933 1.0278 -2.4985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616092020.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:13 Heat of formation + Delta-G solvation = -123.159083 kcal Electronic energy + Delta-G solvation = -28051.717234 eV Core-core repulsion = 24068.779162 eV Total energy + Delta-G solvation = -3982.938072 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.202 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.91663 -47.92339 -40.22192 -38.92222 -36.60903 -34.44111 -32.66838 -32.03563 -31.43915 -30.12006 -28.88923 -26.51806 -24.57249 -23.80739 -23.76950 -22.96473 -21.39433 -20.90347 -20.55688 -18.70955 -18.31284 -17.76438 -17.15776 -16.89397 -16.40392 -16.09778 -15.65251 -15.34033 -15.30251 -15.11621 -14.82962 -14.70834 -14.39827 -14.25779 -14.22187 -14.09805 -13.73582 -13.70783 -13.32528 -13.11257 -13.04393 -12.94756 -12.79032 -12.59592 -12.53046 -12.35246 -12.17675 -12.05834 -11.96014 -11.93766 -11.75772 -11.49525 -11.34394 -11.13326 -11.07155 -10.87010 -10.54042 -9.18508 -8.68286 -7.87819 -5.32996 1.45752 1.47683 1.58536 2.51325 2.88587 3.13399 3.24039 3.30175 3.45337 3.48721 3.70518 3.90018 4.06639 4.08175 4.13108 4.22001 4.30094 4.39801 4.45104 4.49764 4.52544 4.57395 4.59443 4.71461 4.72649 4.83213 4.87728 4.91531 4.95483 4.99576 5.01603 5.10741 5.13248 5.15257 5.17874 5.20232 5.29865 5.40127 5.43240 5.52199 5.55051 5.58421 5.65702 5.76626 6.26954 6.39757 6.65687 7.15304 7.86611 8.38201 9.18727 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.025768 B = 0.002733 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.378907 B =10242.187961 C =10791.128513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.089 3.911 3 H 0.063 0.937 4 N -0.675 5.675 5 C 0.111 3.889 6 C -0.101 4.101 7 C 0.140 3.860 8 N -0.610 5.610 9 C -0.262 4.262 10 H 0.064 0.936 11 C -0.051 4.051 12 N -0.936 5.936 13 Si 0.966 3.034 14 H -0.267 1.267 15 H -0.292 1.292 16 H -0.288 1.288 17 C 0.180 3.820 18 C -0.125 4.125 19 C -0.068 4.068 20 C -0.101 4.101 21 C -0.154 4.154 22 C 0.276 3.724 23 F -0.217 7.217 24 F -0.216 7.216 25 C -0.150 4.150 26 C -0.113 4.113 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.038 0.962 30 H 0.344 0.656 31 H 0.029 0.971 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.008 0.992 35 H 0.050 0.950 36 H 0.250 0.750 37 H -0.008 1.008 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.087 0.913 42 H 0.050 0.950 43 H 0.083 0.917 44 H 0.109 0.891 45 H 0.079 0.921 46 H 0.112 0.888 47 H 0.090 0.910 48 H 0.096 0.904 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.889 -7.026 -23.326 24.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.020 4.020 3 H 0.081 0.919 4 N -0.306 5.306 5 C 0.002 3.998 6 C -0.140 4.140 7 C 0.014 3.986 8 N -0.334 5.334 9 C -0.392 4.392 10 H 0.082 0.918 11 C -0.246 4.246 12 N -0.582 5.582 13 Si 0.795 3.205 14 H -0.192 1.192 15 H -0.219 1.219 16 H -0.215 1.215 17 C 0.054 3.946 18 C -0.164 4.164 19 C -0.087 4.087 20 C -0.139 4.139 21 C -0.192 4.192 22 C 0.240 3.760 23 F -0.198 7.198 24 F -0.197 7.197 25 C -0.187 4.187 26 C -0.151 4.151 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.057 0.943 30 H 0.164 0.836 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.026 0.974 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.010 0.990 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.105 0.895 42 H 0.069 0.931 43 H 0.102 0.898 44 H 0.127 0.873 45 H 0.097 0.903 46 H 0.130 0.870 47 H 0.108 0.892 48 H 0.114 0.886 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.252 -6.935 -23.379 24.602 hybrid contribution -0.253 0.430 1.268 1.363 sum -3.505 -6.505 -22.111 23.313 Atomic orbital electron populations 1.22511 0.96413 1.02753 1.02141 1.21581 0.93001 0.97458 0.90010 0.91894 1.60574 1.57449 1.09419 1.03141 1.21130 0.96003 0.93366 0.89329 1.21793 0.97462 0.97828 0.96963 1.21068 0.98045 0.92954 0.86513 1.44326 1.25274 1.51201 1.12598 1.19543 0.90004 1.43679 0.85959 0.91828 1.25791 0.97491 1.01883 0.99469 1.70187 1.14361 1.54323 1.19319 0.85221 0.79123 0.77067 0.79127 1.19175 1.21909 1.21511 1.20532 0.86776 0.91160 0.96152 1.22136 1.00895 0.98210 0.95195 1.21113 0.94662 1.00317 0.92604 1.21374 0.95777 1.00242 0.96459 1.22550 1.02615 1.01576 0.92451 1.21599 0.95245 0.75137 0.84019 1.92974 1.90872 1.81205 1.54764 1.92959 1.90793 1.39066 1.96878 1.22512 0.89740 1.05348 1.01145 1.21637 1.02311 0.99158 0.92007 0.91288 0.90527 0.94278 0.83646 0.95333 0.92762 0.91496 0.97356 0.93111 0.94107 0.98975 0.92862 0.91467 0.92667 0.89461 0.93098 0.89848 0.87267 0.90278 0.87005 0.89168 0.88583 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.88 8.79 71.98 0.63 -2.24 16 2 C 0.09 1.66 1.98 44.91 0.09 1.75 16 3 H 0.06 1.39 7.10 -2.39 -0.02 1.38 16 4 N -0.68 -15.41 5.29 -469.31 -2.48 -17.89 16 5 C 0.11 3.43 2.27 44.94 0.10 3.54 16 6 C -0.10 -3.43 5.57 30.68 0.17 -3.25 16 7 C 0.14 5.96 6.52 86.36 0.56 6.52 16 8 N -0.61 -31.21 2.99 -699.10 -2.09 -33.30 16 9 C -0.26 -14.67 9.58 84.03 0.81 -13.87 16 10 H 0.06 3.51 7.89 -2.91 -0.02 3.48 16 11 C -0.05 -2.89 4.92 84.86 0.42 -2.48 16 12 N -0.94 -55.82 11.19 21.65 0.24 -55.58 16 13 Si 0.97 45.32 29.59 68.60 2.03 47.35 16 14 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 15 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 16 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 17 C 0.18 8.70 5.30 86.36 0.46 9.16 16 18 C -0.12 -4.53 5.36 30.67 0.16 -4.36 16 19 C -0.07 -0.99 1.96 -10.79 -0.02 -1.01 16 20 C -0.10 -1.79 4.92 30.60 0.15 -1.63 16 21 C -0.15 -2.41 5.45 30.60 0.17 -2.24 16 22 C 0.28 4.82 2.10 30.59 0.06 4.88 16 23 F -0.22 -4.42 17.06 44.97 0.77 -3.65 16 24 F -0.22 -4.86 16.03 44.97 0.72 -4.14 16 25 C -0.15 -1.81 5.45 30.61 0.17 -1.64 16 26 C -0.11 -1.41 4.73 30.61 0.14 -1.27 16 27 H 0.07 0.94 8.13 -2.39 -0.02 0.92 16 28 H 0.08 0.99 6.43 -2.39 -0.02 0.98 16 29 H 0.04 0.78 7.43 -2.39 -0.02 0.76 16 30 H 0.34 7.13 8.07 -89.70 -0.72 6.41 16 31 H 0.03 0.94 7.11 -2.39 -0.02 0.92 16 32 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.07 2.00 7.41 -2.39 -0.02 1.98 16 34 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 36 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 37 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 38 H 0.05 2.93 6.06 -2.39 -0.01 2.91 16 39 H 0.07 2.11 8.10 -2.38 -0.02 2.09 16 40 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.05 1.07 7.80 -2.39 -0.02 1.05 16 43 H 0.08 1.69 7.60 -2.39 -0.02 1.68 16 44 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.10 0.90 6.43 -2.39 -0.02 0.88 16 49 H 0.06 0.94 7.80 -2.39 -0.02 0.92 16 Total: -1.00 -64.16 371.28 3.46 -60.70 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.20 Total: 14.67 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 4.07 Total: -8.15 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -4.33 Total: -106.77 kcal Atomic # 9 Polarization: -9.28 SS G_CDS: 1.49 Total: -7.80 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -64.16 3.46 -60.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616092020.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.456 kcal (2) G-P(sol) polarization free energy of solvation -64.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds