Wall clock time and date at job start Tue Mar 31 2020 11:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47284 * 2 1 4 4 N 1.46899 * 109.47166 * 240.00231 * 2 1 3 5 5 C 1.46904 * 111.00174 * 109.68190 * 4 2 1 6 6 C 1.53034 * 109.46184 * 274.28781 * 5 4 2 7 7 C 1.53196 * 109.31236 * 178.61085 * 6 5 4 8 8 N 1.46928 * 108.77325 * 54.63705 * 7 6 5 9 9 C 1.36935 * 120.62991 * 126.36772 * 8 7 6 10 10 H 1.07994 * 120.00347 * 331.13737 * 9 8 7 11 11 C 1.38816 * 119.99951 * 151.14227 * 9 8 7 12 12 N 1.31621 * 119.99560 * 344.74033 * 11 9 8 13 13 Si 1.86798 * 120.00198 * 164.74521 * 11 9 8 14 14 H 1.48490 * 109.47475 * 89.99556 * 13 11 9 15 15 H 1.48503 * 109.46937 * 210.00017 * 13 11 9 16 16 H 1.48505 * 109.46846 * 329.99401 * 13 11 9 17 17 C 1.46928 * 118.73888 * 306.39073 * 8 7 6 18 18 C 1.53038 * 109.45969 * 154.21802 * 5 4 2 19 19 C 1.52998 * 109.47357 * 120.00267 * 2 1 3 20 20 C 1.53004 * 109.46895 * 299.99546 * 19 2 1 21 21 C 1.52998 * 109.46895 * 179.97438 * 20 19 2 22 22 C 1.53001 * 109.47357 * 60.00454 * 21 20 19 23 23 F 1.39902 * 109.47025 * 59.99892 * 22 21 20 24 24 F 1.39899 * 109.47180 * 179.97438 * 22 21 20 25 25 C 1.52998 * 109.46993 * 300.00073 * 22 21 20 26 26 C 1.52994 * 109.47462 * 59.99738 * 25 22 21 27 27 H 1.08996 * 109.46666 * 185.50863 * 1 2 3 28 28 H 1.09005 * 109.46913 * 305.50100 * 1 2 3 29 29 H 1.08994 * 109.47404 * 65.50334 * 1 2 3 30 30 H 1.00896 * 111.00011 * 345.73014 * 4 2 1 31 31 H 1.09005 * 109.45564 * 34.24990 * 5 4 2 32 32 H 1.08999 * 109.49836 * 298.56364 * 6 5 4 33 33 H 1.09000 * 109.49935 * 58.66085 * 6 5 4 34 34 H 1.08996 * 109.58696 * 294.84971 * 7 6 5 35 35 H 1.08999 * 109.70338 * 174.49166 * 7 6 5 36 36 H 0.97003 * 119.99646 * 180.02562 * 12 11 9 37 37 H 1.08997 * 109.58147 * 293.82408 * 17 8 7 38 38 H 1.08992 * 109.70216 * 173.46648 * 17 8 7 39 39 H 1.08996 * 109.49703 * 301.33971 * 18 5 4 40 40 H 1.08998 * 109.50192 * 61.43497 * 18 5 4 41 41 H 1.08993 * 109.47308 * 59.99977 * 19 2 1 42 42 H 1.09002 * 109.46851 * 60.00359 * 20 19 2 43 43 H 1.08993 * 109.47494 * 300.00317 * 20 19 2 44 44 H 1.09000 * 109.47259 * 180.02562 * 21 20 19 45 45 H 1.09000 * 109.47142 * 300.00100 * 21 20 19 46 46 H 1.08998 * 109.47511 * 180.02562 * 25 22 21 47 47 H 1.09007 * 109.47091 * 299.99631 * 25 22 21 48 48 H 1.09000 * 109.47221 * 59.99540 * 26 25 22 49 49 H 1.08999 * 109.47638 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.6307 0.2547 -2.1416 6 6 1.5441 0.8585 -3.0342 7 6 2.1800 1.8712 -3.9919 8 7 3.2661 1.2091 -4.7273 9 6 3.2987 1.2347 -6.0960 10 1 2.3784 1.3014 -6.6570 11 6 4.5150 1.1748 -6.7625 12 7 5.6355 1.3947 -6.1080 13 14 4.5612 0.7822 -8.5882 14 1 4.4785 2.0432 -9.3679 15 1 5.8303 0.0823 -8.9120 16 1 3.4116 -0.0912 -8.9359 17 6 4.3162 0.5186 -3.9662 18 6 3.6563 -0.4788 -3.0088 19 6 2.0401 -0.7213 1.2492 20 6 1.5301 0.0000 2.4985 21 6 2.0397 -0.7216 3.7476 22 6 3.5697 -0.7222 3.7480 23 9 4.0365 0.5966 3.7483 24 9 4.0355 -1.3816 4.8905 25 6 4.0796 -1.4434 2.4987 26 6 3.5702 -0.7218 1.2495 27 1 -0.3632 -1.0229 0.0987 28 1 -0.3633 0.5968 0.8367 29 1 -0.3634 0.4261 -0.9351 30 1 1.2795 -1.2161 -1.6421 31 1 3.1275 1.0501 -1.5860 32 1 1.0636 0.0666 -3.6087 33 1 0.8015 1.3608 -2.4143 34 1 2.5819 2.7095 -3.4230 35 1 1.4300 2.2330 -4.6952 36 1 6.4854 1.3532 -6.5738 37 1 4.8923 1.2468 -3.3952 38 1 4.9763 -0.0139 -4.6507 39 1 4.4171 -0.9284 -2.3707 40 1 3.1560 -1.2582 -3.5835 41 1 1.6768 -1.7489 1.2492 42 1 0.4401 0.0000 2.4985 43 1 1.8934 1.0276 2.4985 44 1 1.6761 -0.2081 4.6377 45 1 1.6759 -1.7492 3.7474 46 1 5.1696 -1.4442 2.4991 47 1 3.7159 -2.4710 2.4984 48 1 3.9338 0.3058 1.2497 49 1 3.9331 -1.2358 0.3595 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616092024.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:16 Heat of formation + Delta-G solvation = -107.485062 kcal Electronic energy + Delta-G solvation = -28101.031159 eV Core-core repulsion = 24118.772763 eV Total energy + Delta-G solvation = -3982.258395 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.202 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.08969 -47.07737 -39.22799 -37.60996 -35.29969 -32.86757 -31.46210 -30.89062 -29.89594 -28.82078 -27.93511 -24.69458 -23.44802 -23.06109 -22.08831 -21.45425 -20.78591 -20.12824 -18.99152 -17.52137 -16.99916 -16.76627 -16.38355 -15.23955 -15.14958 -14.82308 -14.56094 -14.31571 -13.92623 -13.70951 -13.54030 -13.44746 -13.38722 -13.22492 -13.20028 -12.74411 -12.70846 -12.63511 -12.32077 -12.18034 -11.97556 -11.72884 -11.39734 -11.31130 -11.25037 -10.99059 -10.88935 -10.69756 -10.66202 -10.55919 -10.26153 -10.20946 -10.11148 -9.95098 -9.68337 -9.38821 -8.47720 -8.04372 -6.63482 -5.76985 -3.20706 3.37746 3.44716 3.46856 3.61135 3.91994 4.08873 4.19120 4.32745 4.50538 4.67205 4.85016 4.91759 5.00181 5.09939 5.18548 5.21651 5.33423 5.36097 5.42224 5.44477 5.49171 5.52519 5.60541 5.67719 5.69587 5.77698 5.84285 5.85440 5.91412 5.99071 6.09190 6.12694 6.26385 6.32852 6.37104 6.51723 6.63728 6.66308 6.72292 6.86848 6.96246 7.38522 7.42605 7.67537 7.72898 7.81127 8.48026 9.23859 9.86854 10.44012 11.31354 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.024523 B = 0.002806 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.499288 B = 9977.935998 C =10646.548441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.088 3.912 3 H 0.068 0.932 4 N -0.682 5.682 5 C 0.098 3.902 6 C -0.159 4.159 7 C 0.149 3.851 8 N -0.592 5.592 9 C -0.252 4.252 10 H 0.063 0.937 11 C 0.002 3.998 12 N -0.903 5.903 13 Si 0.902 3.098 14 H -0.287 1.287 15 H -0.289 1.289 16 H -0.280 1.280 17 C 0.171 3.829 18 C -0.125 4.125 19 C -0.075 4.075 20 C -0.118 4.118 21 C -0.154 4.154 22 C 0.285 3.715 23 F -0.200 7.200 24 F -0.208 7.208 25 C -0.157 4.157 26 C -0.107 4.107 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.338 0.662 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.015 0.985 35 H 0.050 0.950 36 H 0.253 0.747 37 H 0.015 0.985 38 H 0.088 0.912 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.084 0.916 47 H 0.091 0.909 48 H 0.066 0.934 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.795 -5.684 19.291 21.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.022 4.022 3 H 0.086 0.914 4 N -0.311 5.311 5 C -0.011 4.011 6 C -0.200 4.200 7 C 0.022 3.978 8 N -0.315 5.315 9 C -0.382 4.382 10 H 0.081 0.919 11 C -0.196 4.196 12 N -0.547 5.547 13 Si 0.732 3.268 14 H -0.214 1.214 15 H -0.215 1.215 16 H -0.205 1.205 17 C 0.045 3.955 18 C -0.165 4.165 19 C -0.094 4.094 20 C -0.156 4.156 21 C -0.192 4.192 22 C 0.249 3.751 23 F -0.181 7.181 24 F -0.189 7.189 25 C -0.195 4.195 26 C -0.144 4.144 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.156 0.844 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.033 0.967 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.034 0.966 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.110 0.890 46 H 0.102 0.898 47 H 0.109 0.891 48 H 0.084 0.916 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.987 -5.846 19.527 21.893 hybrid contribution -0.617 0.365 -1.070 1.288 sum -8.605 -5.481 18.457 21.089 Atomic orbital electron populations 1.22475 0.96715 1.02037 1.02165 1.21566 0.92732 0.97142 0.90798 0.91373 1.60691 1.35905 1.26989 1.07563 1.21639 0.94770 0.93048 0.91688 1.22734 0.97896 1.00541 0.98831 1.20816 0.91380 0.92390 0.93253 1.44051 1.25573 1.59625 1.02260 1.19157 0.91881 1.45656 0.81507 0.91921 1.25070 0.95952 1.00816 0.97784 1.70017 0.97174 1.52168 1.35387 0.86306 0.77029 0.78107 0.85372 1.21438 1.21542 1.20531 1.20794 0.90181 0.92206 0.92342 1.22176 0.97406 0.99396 0.97473 1.21219 0.95409 0.99791 0.92992 1.21664 1.01271 0.99976 0.92716 1.22484 0.91690 1.04042 1.01032 1.21224 0.93766 0.75922 0.84155 1.92992 1.90449 1.37838 1.96828 1.92990 1.90633 1.81111 1.54179 1.22553 1.02823 1.00859 0.93262 1.21468 0.95151 1.01186 0.96633 0.92353 0.92207 0.92377 0.84355 0.91421 0.92354 0.93633 0.96745 0.93095 0.93649 0.96648 0.89410 0.92859 0.92957 0.90775 0.90463 0.90983 0.89893 0.88976 0.89755 0.89066 0.91575 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 8.52 37.16 0.32 -1.25 16 2 C 0.09 0.92 2.21 -67.71 -0.15 0.77 16 3 H 0.07 0.81 7.15 -51.93 -0.37 0.44 16 4 N -0.68 -8.50 5.38 -99.70 -0.54 -9.04 16 5 C 0.10 1.54 2.35 -67.67 -0.16 1.39 16 6 C -0.16 -2.64 5.33 -26.61 -0.14 -2.78 16 7 C 0.15 3.09 6.52 -3.71 -0.02 3.07 16 8 N -0.59 -14.76 2.99 -172.32 -0.52 -15.27 16 9 C -0.25 -6.93 9.59 -15.06 -0.14 -7.07 16 10 H 0.06 1.69 7.87 -52.49 -0.41 1.28 16 11 C 0.00 0.06 4.96 -17.43 -0.09 -0.02 16 12 N -0.90 -26.22 11.14 55.49 0.62 -25.60 16 13 Si 0.90 21.68 29.58 -169.99 -5.03 16.66 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 C 0.17 4.04 5.29 -3.71 -0.02 4.02 16 18 C -0.12 -2.33 5.69 -26.61 -0.15 -2.48 16 19 C -0.07 -0.68 1.96 -90.61 -0.18 -0.86 16 20 C -0.12 -0.95 4.73 -26.73 -0.13 -1.07 16 21 C -0.15 -1.22 5.45 -26.73 -0.15 -1.36 16 22 C 0.29 2.88 2.10 -26.73 -0.06 2.82 16 23 F -0.20 -2.44 16.03 2.25 0.04 -2.40 16 24 F -0.21 -2.37 17.06 2.25 0.04 -2.33 16 25 C -0.16 -1.47 5.45 -26.74 -0.15 -1.61 16 26 C -0.11 -1.11 4.93 -26.73 -0.13 -1.24 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.47 6.74 -51.93 -0.35 0.12 16 29 H 0.06 0.57 7.02 -51.93 -0.36 0.21 16 30 H 0.34 4.12 7.89 -39.29 -0.31 3.81 16 31 H 0.07 1.14 7.37 -51.93 -0.38 0.76 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.66 6.95 -51.93 -0.36 0.30 16 34 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 36 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 2.34 6.06 -51.93 -0.31 2.03 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.52 6.56 -51.93 -0.34 0.18 16 43 H 0.07 0.65 7.80 -51.93 -0.41 0.24 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 48 H 0.07 0.77 7.80 -51.93 -0.41 0.36 16 49 H 0.09 1.11 7.60 -51.93 -0.39 0.72 16 LS Contribution 371.19 15.07 5.59 5.59 Total: -1.00 -28.86 371.19 -9.75 -38.61 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -8.61 Total: 1.46 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -1.34 Total: -7.68 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: -0.43 Total: -49.91 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.07 Total: -4.73 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.86 -9.75 -38.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616092024.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.876 kcal (2) G-P(sol) polarization free energy of solvation -28.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds