Wall clock time and date at job start Tue Mar 31 2020 11:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47284 * 2 1 4 4 N 1.46899 * 109.47166 * 240.00231 * 2 1 3 5 5 C 1.46904 * 111.00174 * 109.68190 * 4 2 1 6 6 C 1.53034 * 109.46184 * 274.28781 * 5 4 2 7 7 C 1.53196 * 109.31236 * 178.61085 * 6 5 4 8 8 N 1.46928 * 108.77325 * 54.63705 * 7 6 5 9 9 C 1.36935 * 120.62991 * 126.36772 * 8 7 6 10 10 H 1.07994 * 120.00347 * 331.13737 * 9 8 7 11 11 C 1.38816 * 119.99951 * 151.14227 * 9 8 7 12 12 N 1.31621 * 119.99560 * 344.74033 * 11 9 8 13 13 Si 1.86798 * 120.00198 * 164.74521 * 11 9 8 14 14 H 1.48490 * 109.47475 * 89.99556 * 13 11 9 15 15 H 1.48503 * 109.46937 * 210.00017 * 13 11 9 16 16 H 1.48505 * 109.46846 * 329.99401 * 13 11 9 17 17 C 1.46928 * 118.73888 * 306.39073 * 8 7 6 18 18 C 1.53038 * 109.45969 * 154.21802 * 5 4 2 19 19 C 1.52998 * 109.47357 * 120.00267 * 2 1 3 20 20 C 1.53004 * 109.46895 * 299.99546 * 19 2 1 21 21 C 1.52998 * 109.46895 * 179.97438 * 20 19 2 22 22 C 1.53001 * 109.47357 * 60.00454 * 21 20 19 23 23 F 1.39902 * 109.47025 * 59.99892 * 22 21 20 24 24 F 1.39899 * 109.47180 * 179.97438 * 22 21 20 25 25 C 1.52998 * 109.46993 * 300.00073 * 22 21 20 26 26 C 1.52994 * 109.47462 * 59.99738 * 25 22 21 27 27 H 1.08996 * 109.46666 * 185.50863 * 1 2 3 28 28 H 1.09005 * 109.46913 * 305.50100 * 1 2 3 29 29 H 1.08994 * 109.47404 * 65.50334 * 1 2 3 30 30 H 1.00896 * 111.00011 * 345.73014 * 4 2 1 31 31 H 1.09005 * 109.45564 * 34.24990 * 5 4 2 32 32 H 1.08999 * 109.49836 * 298.56364 * 6 5 4 33 33 H 1.09000 * 109.49935 * 58.66085 * 6 5 4 34 34 H 1.08996 * 109.58696 * 294.84971 * 7 6 5 35 35 H 1.08999 * 109.70338 * 174.49166 * 7 6 5 36 36 H 0.97003 * 119.99646 * 180.02562 * 12 11 9 37 37 H 1.08997 * 109.58147 * 293.82408 * 17 8 7 38 38 H 1.08992 * 109.70216 * 173.46648 * 17 8 7 39 39 H 1.08996 * 109.49703 * 301.33971 * 18 5 4 40 40 H 1.08998 * 109.50192 * 61.43497 * 18 5 4 41 41 H 1.08993 * 109.47308 * 59.99977 * 19 2 1 42 42 H 1.09002 * 109.46851 * 60.00359 * 20 19 2 43 43 H 1.08993 * 109.47494 * 300.00317 * 20 19 2 44 44 H 1.09000 * 109.47259 * 180.02562 * 21 20 19 45 45 H 1.09000 * 109.47142 * 300.00100 * 21 20 19 46 46 H 1.08998 * 109.47511 * 180.02562 * 25 22 21 47 47 H 1.09007 * 109.47091 * 299.99631 * 25 22 21 48 48 H 1.09000 * 109.47221 * 59.99540 * 26 25 22 49 49 H 1.08999 * 109.47638 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.6307 0.2547 -2.1416 6 6 1.5441 0.8585 -3.0342 7 6 2.1800 1.8712 -3.9919 8 7 3.2661 1.2091 -4.7273 9 6 3.2987 1.2347 -6.0960 10 1 2.3784 1.3014 -6.6570 11 6 4.5150 1.1748 -6.7625 12 7 5.6355 1.3947 -6.1080 13 14 4.5612 0.7822 -8.5882 14 1 4.4785 2.0432 -9.3679 15 1 5.8303 0.0823 -8.9120 16 1 3.4116 -0.0912 -8.9359 17 6 4.3162 0.5186 -3.9662 18 6 3.6563 -0.4788 -3.0088 19 6 2.0401 -0.7213 1.2492 20 6 1.5301 0.0000 2.4985 21 6 2.0397 -0.7216 3.7476 22 6 3.5697 -0.7222 3.7480 23 9 4.0365 0.5966 3.7483 24 9 4.0355 -1.3816 4.8905 25 6 4.0796 -1.4434 2.4987 26 6 3.5702 -0.7218 1.2495 27 1 -0.3632 -1.0229 0.0987 28 1 -0.3633 0.5968 0.8367 29 1 -0.3634 0.4261 -0.9351 30 1 1.2795 -1.2161 -1.6421 31 1 3.1275 1.0501 -1.5860 32 1 1.0636 0.0666 -3.6087 33 1 0.8015 1.3608 -2.4143 34 1 2.5819 2.7095 -3.4230 35 1 1.4300 2.2330 -4.6952 36 1 6.4854 1.3532 -6.5738 37 1 4.8923 1.2468 -3.3952 38 1 4.9763 -0.0139 -4.6507 39 1 4.4171 -0.9284 -2.3707 40 1 3.1560 -1.2582 -3.5835 41 1 1.6768 -1.7489 1.2492 42 1 0.4401 0.0000 2.4985 43 1 1.8934 1.0276 2.4985 44 1 1.6761 -0.2081 4.6377 45 1 1.6759 -1.7492 3.7474 46 1 5.1696 -1.4442 2.4991 47 1 3.7159 -2.4710 2.4984 48 1 3.9338 0.3058 1.2497 49 1 3.9331 -1.2358 0.3595 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616092024.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:16 Heat of formation + Delta-G solvation = -122.701275 kcal Electronic energy + Delta-G solvation = -28101.690983 eV Core-core repulsion = 24118.772763 eV Total energy + Delta-G solvation = -3982.918220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.202 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.93070 -47.93776 -40.24249 -38.91224 -36.59743 -34.42519 -32.67761 -31.98747 -31.50246 -30.03360 -28.95651 -26.47686 -24.36206 -23.79786 -23.73755 -23.02728 -21.67923 -21.06972 -20.40784 -18.71816 -18.32668 -17.76886 -17.17280 -16.92905 -16.24515 -16.11686 -15.62797 -15.35050 -15.25792 -15.06270 -14.79610 -14.71361 -14.39070 -14.34532 -14.25250 -14.00239 -13.86286 -13.59915 -13.34935 -13.15516 -13.02382 -12.88621 -12.70564 -12.58870 -12.48451 -12.41751 -12.11690 -12.05459 -11.93117 -11.90034 -11.83962 -11.65391 -11.36805 -11.24694 -11.02339 -10.81769 -10.54083 -9.14239 -8.66065 -7.86955 -5.34025 1.46085 1.47477 1.57264 2.51079 2.87511 3.14782 3.23814 3.30773 3.46356 3.47536 3.71336 3.89010 4.02259 4.13216 4.13842 4.24171 4.29141 4.37333 4.41910 4.46385 4.54267 4.58487 4.60290 4.72098 4.76116 4.81911 4.88819 4.93254 4.96380 5.00357 5.02805 5.10851 5.12846 5.16573 5.20914 5.23252 5.34526 5.35431 5.41758 5.50793 5.54270 5.57783 5.65971 5.77353 6.28545 6.40756 6.67024 7.15644 7.86927 8.38730 9.19155 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.024523 B = 0.002806 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.499288 B = 9977.935998 C =10646.548441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.088 3.912 3 H 0.053 0.947 4 N -0.676 5.676 5 C 0.113 3.887 6 C -0.143 4.143 7 C 0.143 3.857 8 N -0.611 5.611 9 C -0.264 4.264 10 H 0.065 0.935 11 C -0.052 4.052 12 N -0.936 5.936 13 Si 0.968 3.032 14 H -0.285 1.285 15 H -0.292 1.292 16 H -0.270 1.270 17 C 0.178 3.822 18 C -0.110 4.110 19 C -0.068 4.068 20 C -0.113 4.113 21 C -0.149 4.149 22 C 0.276 3.724 23 F -0.217 7.217 24 F -0.217 7.217 25 C -0.154 4.154 26 C -0.104 4.104 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.345 0.655 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.008 0.992 35 H 0.050 0.950 36 H 0.249 0.751 37 H -0.010 1.010 38 H 0.052 0.948 39 H 0.062 0.938 40 H 0.048 0.952 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.058 0.942 44 H 0.091 0.909 45 H 0.112 0.888 46 H 0.076 0.924 47 H 0.110 0.890 48 H 0.045 0.955 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.315 -6.928 20.418 24.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.022 4.022 3 H 0.071 0.929 4 N -0.305 5.305 5 C 0.003 3.997 6 C -0.183 4.183 7 C 0.017 3.983 8 N -0.334 5.334 9 C -0.394 4.394 10 H 0.082 0.918 11 C -0.247 4.247 12 N -0.582 5.582 13 Si 0.796 3.204 14 H -0.211 1.211 15 H -0.218 1.218 16 H -0.194 1.194 17 C 0.052 3.948 18 C -0.149 4.149 19 C -0.087 4.087 20 C -0.151 4.151 21 C -0.187 4.187 22 C 0.240 3.760 23 F -0.198 7.198 24 F -0.198 7.198 25 C -0.192 4.192 26 C -0.141 4.141 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.164 0.836 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.026 0.974 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.008 0.992 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.106 0.894 42 H 0.117 0.883 43 H 0.077 0.923 44 H 0.109 0.891 45 H 0.131 0.869 46 H 0.095 0.905 47 H 0.128 0.872 48 H 0.064 0.936 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.545 -7.094 20.680 24.272 hybrid contribution 0.184 0.803 -1.374 1.602 sum -10.361 -6.291 19.306 22.795 Atomic orbital electron populations 1.22415 0.94833 1.03159 1.02438 1.21611 0.94173 0.96252 0.90143 0.92917 1.60569 1.36599 1.26138 1.07235 1.21305 0.93972 0.92865 0.91597 1.22562 0.98223 0.99403 0.98139 1.20991 0.90326 0.93287 0.93727 1.44319 1.26564 1.60519 1.02036 1.19500 0.92009 1.44904 0.83007 0.91755 1.25848 0.95643 1.01239 1.01965 1.70183 0.97485 1.53585 1.36916 0.85272 0.76957 0.77835 0.80356 1.21150 1.21836 1.19448 1.20576 0.89933 0.92184 0.92082 1.21921 0.98197 0.97933 0.96870 1.21167 0.94155 1.00497 0.92882 1.21630 1.02437 0.99008 0.92017 1.22507 0.89529 1.05418 1.01240 1.21607 0.95408 0.75076 0.83932 1.92960 1.90829 1.39116 1.96880 1.92970 1.90924 1.81204 1.54666 1.22533 1.02502 1.01633 0.92500 1.21389 0.96398 0.99857 0.96498 0.91024 0.90714 0.93131 0.83581 0.92491 0.92407 0.90714 0.97417 0.93162 0.94141 0.99200 0.92996 0.91901 0.93360 0.89431 0.88314 0.92298 0.89083 0.86940 0.90494 0.87183 0.93581 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 8.52 71.98 0.61 -1.77 16 2 C 0.09 1.61 2.21 44.92 0.10 1.71 16 3 H 0.05 1.16 7.15 -2.39 -0.02 1.15 16 4 N -0.68 -15.35 5.38 -469.33 -2.53 -17.88 16 5 C 0.11 3.45 2.35 44.94 0.11 3.55 16 6 C -0.14 -4.49 5.33 30.67 0.16 -4.33 16 7 C 0.14 5.92 6.52 86.36 0.56 6.48 16 8 N -0.61 -31.05 2.99 -699.10 -2.09 -33.14 16 9 C -0.26 -14.72 9.59 84.03 0.81 -13.91 16 10 H 0.06 3.49 7.87 -2.91 -0.02 3.47 16 11 C -0.05 -2.93 4.96 84.86 0.42 -2.51 16 12 N -0.94 -56.21 11.14 21.65 0.24 -55.97 16 13 Si 0.97 45.24 29.58 68.60 2.03 47.27 16 14 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 15 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 17 C 0.18 8.76 5.29 86.36 0.46 9.22 16 18 C -0.11 -4.11 5.69 30.67 0.17 -3.93 16 19 C -0.07 -1.06 1.96 -10.79 -0.02 -1.08 16 20 C -0.11 -1.47 4.73 30.60 0.14 -1.33 16 21 C -0.15 -1.91 5.45 30.59 0.17 -1.74 16 22 C 0.28 5.16 2.10 30.59 0.06 5.23 16 23 F -0.22 -5.20 16.03 44.97 0.72 -4.48 16 24 F -0.22 -4.64 17.06 44.97 0.77 -3.87 16 25 C -0.15 -2.68 5.45 30.59 0.17 -2.51 16 26 C -0.10 -2.04 4.93 30.60 0.15 -1.89 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 0.85 6.74 -2.38 -0.02 0.84 16 29 H 0.05 0.80 7.02 -2.39 -0.02 0.79 16 30 H 0.35 7.32 7.89 -89.70 -0.71 6.61 16 31 H 0.06 1.90 7.37 -2.38 -0.02 1.88 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 1.95 6.95 -2.39 -0.02 1.93 16 34 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 36 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 37 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 38 H 0.05 2.90 6.06 -2.39 -0.01 2.89 16 39 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.10 0.91 6.56 -2.39 -0.02 0.89 16 43 H 0.06 0.95 7.80 -2.39 -0.02 0.93 16 44 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 48 H 0.05 1.08 7.80 -2.39 -0.02 1.06 16 49 H 0.08 1.82 7.60 -2.39 -0.02 1.80 16 Total: -1.00 -64.39 371.19 3.43 -60.96 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.22 Total: 15.91 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 4.07 Total: -8.81 kcal Atomic # 7 Polarization: -102.61 SS G_CDS: -4.38 Total: -106.99 kcal Atomic # 9 Polarization: -9.84 SS G_CDS: 1.49 Total: -8.36 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -64.39 3.43 -60.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616092024.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.739 kcal (2) G-P(sol) polarization free energy of solvation -64.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds