Wall clock time and date at job start Tue Mar 31 2020 11:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47587 * 2 1 4 4 N 1.46505 * 109.47039 * 120.00063 * 2 1 3 5 5 C 1.35196 * 126.00204 * 275.03101 * 4 2 1 6 6 C 1.34574 * 107.61861 * 179.97438 * 5 4 2 7 7 C 1.40496 * 108.03534 * 359.90252 * 6 5 4 8 8 N 1.30127 * 108.22866 * 0.12625 * 7 6 5 9 9 C 1.50922 * 123.46555 * 180.24751 * 7 6 5 10 10 H 1.09005 * 109.75678 * 257.00305 * 9 7 6 11 11 N 1.46902 * 109.66451 * 136.36853 * 9 7 6 12 12 C 1.46897 * 111.00382 * 86.26922 * 11 9 7 13 13 C 1.53003 * 109.47330 * 180.02562 * 12 11 9 14 14 H 1.08998 * 109.46682 * 55.00133 * 13 12 11 15 15 C 1.47190 * 109.46893 * 294.99801 * 13 12 11 16 16 N 8.74312 * 94.09893 * 163.16508 * 2 1 3 17 17 C 1.53006 * 109.46804 * 174.99804 * 13 12 11 18 18 C 1.50705 * 109.46530 * 185.00024 * 17 13 12 19 19 H 1.07991 * 120.00066 * 359.97438 * 18 17 13 20 20 C 1.37881 * 119.99519 * 179.97438 * 18 17 13 21 21 N 1.31511 * 119.99769 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00193 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47011 * 89.99729 * 22 20 18 24 24 H 1.48492 * 109.47120 * 209.99808 * 22 20 18 25 25 H 1.48500 * 109.46961 * 329.99768 * 22 20 18 26 26 C 1.53372 * 108.21788 * 16.71261 * 9 7 6 27 27 C 1.53025 * 109.69874 * 309.26357 * 26 9 7 28 28 C 1.50881 * 128.32770 * 179.85957 * 6 5 4 29 29 H 1.09001 * 109.47091 * 300.00715 * 1 2 3 30 30 H 1.09008 * 109.46781 * 59.99728 * 1 2 3 31 31 H 1.08994 * 109.47498 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47091 * 239.99285 * 2 1 3 33 33 H 1.08998 * 109.47735 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47110 * 299.99739 * 3 2 1 35 35 H 1.08999 * 109.47196 * 59.99977 * 3 2 1 36 36 H 1.08000 * 126.19347 * 359.97438 * 5 4 2 37 37 H 1.00898 * 110.99942 * 322.30939 * 11 9 7 38 38 H 1.09000 * 109.46962 * 299.99741 * 12 11 9 39 39 H 1.08998 * 109.47296 * 59.99633 * 12 11 9 40 40 H 1.09001 * 109.46990 * 304.99783 * 17 13 12 41 41 H 1.08993 * 109.47137 * 65.00332 * 17 13 12 42 42 H 0.96996 * 120.00292 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.42674 * 189.20738 * 26 9 7 44 44 H 1.09002 * 109.42225 * 69.31975 * 26 9 7 45 45 H 1.09002 * 109.42497 * 191.83226 * 27 26 9 46 46 H 1.08993 * 109.43575 * 311.73189 * 27 26 9 47 47 H 1.09002 * 109.71848 * 76.89446 * 28 6 5 48 48 H 1.09000 * 109.75244 * 316.26353 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1927 -0.1377 2.4175 6 6 2.6530 -1.0998 3.2383 7 6 2.7638 -2.2879 2.4966 8 7 2.3857 -2.0425 1.2759 9 6 3.2448 -3.5929 3.0825 10 1 4.2758 -3.7752 2.7791 11 7 2.3882 -4.6906 2.6142 12 6 2.8544 -5.2073 1.3206 13 6 1.9391 -6.3460 0.8663 14 1 0.9067 -5.9970 0.8483 15 6 2.0592 -7.4753 1.8027 16 7 2.1549 -8.3470 2.5257 17 6 2.3484 -6.8006 -0.5362 18 6 1.3727 -7.8361 -1.0332 19 1 0.5440 -8.1398 -0.4109 20 6 1.5381 -8.3956 -2.2825 21 7 0.6870 -9.2996 -2.7160 22 14 2.9720 -7.8707 -3.3586 23 1 4.1415 -8.7442 -3.0856 24 1 2.5878 -7.9903 -4.7880 25 1 3.3265 -6.4604 -3.0575 26 6 3.1655 -3.4905 4.6107 27 6 3.8596 -2.2095 5.0786 28 6 3.0074 -0.9914 4.7008 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9562 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.9980 0.8901 2.6860 37 1 1.4237 -4.3990 2.5608 38 1 2.8329 -4.4071 0.5807 39 1 3.8738 -5.5791 1.4239 40 1 2.3449 -5.9446 -1.2110 41 1 3.3489 -7.2315 -0.5010 42 1 0.8035 -9.6936 -3.5947 43 1 3.6582 -4.3539 5.0580 44 1 2.1202 -3.4698 4.9189 45 1 3.9876 -2.2410 6.1606 46 1 4.8358 -2.1305 4.6002 47 1 2.0969 -0.9796 5.3000 48 1 3.5746 -0.0772 4.8757 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764942324.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:51 Heat of formation + Delta-G solvation = 81.905574 kcal Electronic energy + Delta-G solvation = -26441.126243 eV Core-core repulsion = 22917.769629 eV Total energy + Delta-G solvation = -3523.356615 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.66146 -38.04228 -36.74573 -35.30223 -34.64314 -33.42478 -31.93201 -30.37470 -29.63928 -28.31876 -27.65485 -26.33080 -24.29902 -22.65284 -21.90517 -21.54221 -21.19121 -20.16922 -19.14182 -17.10059 -16.81769 -16.71896 -15.63912 -15.51604 -15.07612 -14.82541 -14.37491 -14.17433 -14.04523 -13.88797 -13.60200 -13.30308 -13.12628 -13.04062 -12.86486 -12.63012 -12.42656 -12.26073 -12.09489 -11.96117 -11.82366 -11.69587 -11.50281 -11.34153 -11.27289 -11.19938 -10.98981 -10.76313 -10.74429 -10.38961 -10.21472 -9.90638 -9.64134 -9.41878 -9.26132 -8.56811 -8.45892 -8.23099 -6.05846 -4.05723 1.81921 2.30176 2.65566 3.30770 3.38084 3.39538 3.78438 3.86545 4.07020 4.26699 4.43044 4.46334 4.52012 4.60162 4.68181 4.82486 4.90127 4.94850 5.04406 5.05500 5.19782 5.25513 5.28277 5.29500 5.33498 5.45207 5.45784 5.57211 5.60348 5.65518 5.70060 5.76940 5.79477 5.81421 5.94272 6.07876 6.15012 6.17924 6.23323 6.35026 6.39492 6.60630 6.96691 7.03990 7.09901 7.19758 7.48295 7.69740 7.71165 8.46362 8.63069 8.98272 9.54481 11.07388 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.011476 B = 0.003750 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.315852 B = 7464.442782 C = 9273.432548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.155 3.845 3 C -0.163 4.163 4 N -0.372 5.372 5 C 0.054 3.946 6 C -0.233 4.233 7 C 0.046 3.954 8 N -0.275 5.275 9 C 0.172 3.828 10 H 0.093 0.907 11 N -0.676 5.676 12 C 0.062 3.938 13 C 0.021 3.979 14 H 0.102 0.898 15 C 0.253 3.747 16 N -0.473 5.473 17 C -0.004 4.004 18 C -0.525 4.525 19 H 0.074 0.926 20 C 0.071 3.929 21 N -0.898 5.898 22 Si 0.876 3.124 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.263 1.263 26 C -0.102 4.102 27 C -0.117 4.117 28 C -0.039 4.039 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.166 0.834 37 H 0.346 0.654 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.037 0.963 41 H 0.020 0.980 42 H 0.264 0.736 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.066 0.934 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.226 27.201 10.596 29.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.054 3.946 3 C -0.221 4.221 4 N -0.155 5.155 5 C -0.090 4.090 6 C -0.245 4.245 7 C -0.124 4.124 8 N -0.095 5.095 9 C 0.059 3.941 10 H 0.110 0.890 11 N -0.305 5.305 12 C -0.068 4.068 13 C -0.001 4.001 14 H 0.120 0.880 15 C -0.064 4.064 16 N -0.150 5.150 17 C -0.043 4.043 18 C -0.563 4.563 19 H 0.092 0.908 20 C -0.131 4.131 21 N -0.537 5.537 22 Si 0.704 3.296 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.187 1.187 26 C -0.141 4.141 27 C -0.155 4.155 28 C -0.077 4.077 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.183 0.817 37 H 0.164 0.836 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.055 0.945 41 H 0.039 0.961 42 H 0.074 0.926 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.085 0.915 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.410 24.869 10.574 27.382 hybrid contribution 0.332 1.680 -0.978 1.972 sum 4.742 26.549 9.596 28.626 Atomic orbital electron populations 1.22239 0.93611 1.03655 1.02789 1.21232 0.94828 0.92504 0.86062 1.22181 1.02225 0.94202 1.03467 1.48915 1.51384 1.07047 1.08189 1.21842 1.01984 0.99374 0.85833 1.20055 1.13521 0.93124 0.97846 1.23410 0.99927 0.97863 0.91189 1.77133 1.19974 0.93082 1.19333 1.20237 0.97387 0.82065 0.94362 0.88953 1.60678 1.06590 1.33492 1.29784 1.22178 0.98909 0.96117 0.89591 1.18935 1.01326 0.87131 0.92695 0.87969 1.28780 0.92185 0.93455 0.91974 1.81009 1.09714 1.11519 1.12752 1.19625 0.97592 0.97738 0.89340 1.21049 1.11839 1.21556 1.01867 0.90802 1.24980 0.95975 0.94461 0.97668 1.69907 1.36607 1.27810 1.19357 0.86829 0.83128 0.79870 0.79818 1.20231 1.21325 1.18715 1.21517 1.01809 0.97550 0.93207 1.21563 0.99011 0.94187 1.00707 1.19973 0.99256 0.98166 0.90298 0.92140 0.90535 0.91259 0.87898 0.91587 0.90017 0.91714 0.81658 0.83590 0.92055 0.90742 0.94515 0.96145 0.92641 0.90548 0.91318 0.91444 0.91853 0.91516 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.52 37.15 0.35 -0.87 16 2 C 0.16 1.27 3.93 -67.93 -0.27 1.01 16 3 C -0.16 -0.88 8.84 37.15 0.33 -0.55 16 4 N -0.37 -4.06 3.54 -54.99 -0.19 -4.25 16 5 C 0.05 0.51 10.55 -17.37 -0.18 0.33 16 6 C -0.23 -2.46 5.89 -104.98 -0.62 -3.07 16 7 C 0.05 0.58 6.34 -82.36 -0.52 0.05 16 8 N -0.28 -3.77 11.53 33.74 0.39 -3.38 16 9 C 0.17 2.06 2.84 -68.56 -0.19 1.87 16 10 H 0.09 1.12 7.81 -51.93 -0.41 0.72 16 11 N -0.68 -9.36 5.97 -107.63 -0.64 -10.00 16 12 C 0.06 0.96 4.83 -3.82 -0.02 0.94 16 13 C 0.02 0.40 2.35 -93.41 -0.22 0.18 16 14 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 15 C 0.25 5.45 13.67 -20.75 -0.28 5.17 16 16 N -0.47 -11.10 18.54 42.18 0.78 -10.31 16 17 C 0.00 -0.09 3.49 -27.88 -0.10 -0.19 16 18 C -0.53 -14.59 9.15 -34.44 -0.32 -14.91 16 19 H 0.07 2.25 7.84 -52.49 -0.41 1.84 16 20 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 21 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 22 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.26 -5.96 6.54 56.52 0.37 -5.59 16 26 C -0.10 -1.03 5.49 -26.53 -0.15 -1.17 16 27 C -0.12 -0.95 5.86 -26.52 -0.16 -1.10 16 28 C -0.04 -0.31 6.28 -27.59 -0.17 -0.49 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.43 8.14 -51.92 -0.42 0.00 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.29 7.16 -51.93 -0.37 -0.08 16 36 H 0.17 1.05 7.27 -52.49 -0.38 0.66 16 37 H 0.35 4.79 8.46 -39.29 -0.33 4.46 16 38 H 0.06 0.96 7.11 -51.93 -0.37 0.59 16 39 H 0.07 1.15 8.06 -51.93 -0.42 0.73 16 40 H 0.04 0.80 7.20 -51.93 -0.37 0.42 16 41 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 388.80 15.07 5.86 5.86 Total: -1.00 -33.59 388.80 -8.43 -42.02 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -8.12 Total: 1.21 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -2.61 Total: -10.85 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: 1.11 Total: -54.82 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.59 -8.43 -42.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764942324.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.925 kcal (2) G-P(sol) polarization free energy of solvation -33.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds