Wall clock time and date at job start Tue Mar 31 2020 11:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47587 * 2 1 4 4 N 1.46505 * 109.47039 * 120.00063 * 2 1 3 5 5 C 1.35196 * 126.00204 * 275.03101 * 4 2 1 6 6 C 1.34574 * 107.61861 * 179.97438 * 5 4 2 7 7 C 1.40496 * 108.03534 * 359.90252 * 6 5 4 8 8 N 1.30127 * 108.22866 * 0.12625 * 7 6 5 9 9 C 1.50922 * 123.46555 * 180.24751 * 7 6 5 10 10 H 1.09005 * 109.75678 * 257.00305 * 9 7 6 11 11 N 1.46902 * 109.66451 * 136.36853 * 9 7 6 12 12 C 1.46897 * 111.00382 * 86.26922 * 11 9 7 13 13 C 1.53003 * 109.47330 * 180.02562 * 12 11 9 14 14 H 1.08998 * 109.46682 * 55.00133 * 13 12 11 15 15 C 1.47190 * 109.46893 * 294.99801 * 13 12 11 16 16 N 8.74312 * 94.09893 * 163.16508 * 2 1 3 17 17 C 1.53006 * 109.46804 * 174.99804 * 13 12 11 18 18 C 1.50705 * 109.46530 * 185.00024 * 17 13 12 19 19 H 1.07991 * 120.00066 * 359.97438 * 18 17 13 20 20 C 1.37881 * 119.99519 * 179.97438 * 18 17 13 21 21 N 1.31511 * 119.99769 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00193 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47011 * 89.99729 * 22 20 18 24 24 H 1.48492 * 109.47120 * 209.99808 * 22 20 18 25 25 H 1.48500 * 109.46961 * 329.99768 * 22 20 18 26 26 C 1.53372 * 108.21788 * 16.71261 * 9 7 6 27 27 C 1.53025 * 109.69874 * 309.26357 * 26 9 7 28 28 C 1.50881 * 128.32770 * 179.85957 * 6 5 4 29 29 H 1.09001 * 109.47091 * 300.00715 * 1 2 3 30 30 H 1.09008 * 109.46781 * 59.99728 * 1 2 3 31 31 H 1.08994 * 109.47498 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47091 * 239.99285 * 2 1 3 33 33 H 1.08998 * 109.47735 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47110 * 299.99739 * 3 2 1 35 35 H 1.08999 * 109.47196 * 59.99977 * 3 2 1 36 36 H 1.08000 * 126.19347 * 359.97438 * 5 4 2 37 37 H 1.00898 * 110.99942 * 322.30939 * 11 9 7 38 38 H 1.09000 * 109.46962 * 299.99741 * 12 11 9 39 39 H 1.08998 * 109.47296 * 59.99633 * 12 11 9 40 40 H 1.09001 * 109.46990 * 304.99783 * 17 13 12 41 41 H 1.08993 * 109.47137 * 65.00332 * 17 13 12 42 42 H 0.96996 * 120.00292 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.42674 * 189.20738 * 26 9 7 44 44 H 1.09002 * 109.42225 * 69.31975 * 26 9 7 45 45 H 1.09002 * 109.42497 * 191.83226 * 27 26 9 46 46 H 1.08993 * 109.43575 * 311.73189 * 27 26 9 47 47 H 1.09002 * 109.71848 * 76.89446 * 28 6 5 48 48 H 1.09000 * 109.75244 * 316.26353 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1927 -0.1377 2.4175 6 6 2.6530 -1.0998 3.2383 7 6 2.7638 -2.2879 2.4966 8 7 2.3857 -2.0425 1.2759 9 6 3.2448 -3.5929 3.0825 10 1 4.2758 -3.7752 2.7791 11 7 2.3882 -4.6906 2.6142 12 6 2.8544 -5.2073 1.3206 13 6 1.9391 -6.3460 0.8663 14 1 0.9067 -5.9970 0.8483 15 6 2.0592 -7.4753 1.8027 16 7 2.1549 -8.3470 2.5257 17 6 2.3484 -6.8006 -0.5362 18 6 1.3727 -7.8361 -1.0332 19 1 0.5440 -8.1398 -0.4109 20 6 1.5381 -8.3956 -2.2825 21 7 0.6870 -9.2996 -2.7160 22 14 2.9720 -7.8707 -3.3586 23 1 4.1415 -8.7442 -3.0856 24 1 2.5878 -7.9903 -4.7880 25 1 3.3265 -6.4604 -3.0575 26 6 3.1655 -3.4905 4.6107 27 6 3.8596 -2.2095 5.0786 28 6 3.0074 -0.9914 4.7008 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9562 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.9980 0.8901 2.6860 37 1 1.4237 -4.3990 2.5608 38 1 2.8329 -4.4071 0.5807 39 1 3.8738 -5.5791 1.4239 40 1 2.3449 -5.9446 -1.2110 41 1 3.3489 -7.2315 -0.5010 42 1 0.8035 -9.6936 -3.5947 43 1 3.6582 -4.3539 5.0580 44 1 2.1202 -3.4698 4.9189 45 1 3.9876 -2.2410 6.1606 46 1 4.8358 -2.1305 4.6002 47 1 2.0969 -0.9796 5.3000 48 1 3.5746 -0.0772 4.8757 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764942324.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:50 Heat of formation + Delta-G solvation = 60.907733 kcal Electronic energy + Delta-G solvation = -26442.036778 eV Core-core repulsion = 22917.769629 eV Total energy + Delta-G solvation = -3524.267149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.44103 -39.14073 -38.02617 -36.27890 -35.73813 -35.17686 -33.63602 -31.47396 -30.35927 -29.46390 -28.21215 -27.72538 -25.16430 -23.97621 -23.33665 -22.62465 -22.12803 -20.87440 -19.98231 -18.92059 -18.46640 -17.56281 -16.67446 -16.47865 -16.26897 -15.84035 -15.55826 -15.27871 -15.18177 -14.90896 -14.73879 -14.46306 -14.31860 -14.00075 -13.86568 -13.72318 -13.58260 -13.38652 -13.19999 -13.10893 -13.01909 -12.81007 -12.69473 -12.52535 -12.40199 -12.17054 -12.00146 -11.94440 -11.74737 -11.70506 -11.61899 -11.48472 -11.36079 -10.99467 -10.75894 -10.26023 -9.44317 -9.08267 -8.26930 -6.32293 1.05133 1.40291 1.40973 1.52590 1.61058 1.84240 2.03413 2.10212 2.38443 3.08332 3.13786 3.30480 3.45730 3.79165 3.88942 3.96750 4.09872 4.13096 4.15088 4.18033 4.32725 4.35966 4.52170 4.54810 4.61400 4.64659 4.68233 4.76967 4.80743 4.82320 4.88051 4.92608 4.97716 5.00944 5.11241 5.16376 5.20984 5.22263 5.28846 5.38891 5.40653 5.42358 5.53784 5.60707 5.81302 6.01955 6.24160 6.29308 6.37216 6.74183 6.88018 6.88825 7.31854 8.90037 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.011476 B = 0.003750 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.315852 B = 7464.442782 C = 9273.432548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.147 3.853 3 C -0.154 4.154 4 N -0.376 5.376 5 C 0.059 3.941 6 C -0.248 4.248 7 C 0.034 3.966 8 N -0.319 5.319 9 C 0.172 3.828 10 H 0.089 0.911 11 N -0.680 5.680 12 C 0.079 3.921 13 C 0.029 3.971 14 H 0.108 0.892 15 C 0.264 3.736 16 N -0.509 5.509 17 C 0.000 4.000 18 C -0.531 4.531 19 H 0.030 0.970 20 C 0.006 3.994 21 N -0.952 5.952 22 Si 0.946 3.054 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.231 1.231 26 C -0.097 4.097 27 C -0.112 4.112 28 C -0.035 4.035 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.040 0.960 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.200 0.800 37 H 0.344 0.656 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.056 0.944 41 H 0.026 0.974 42 H 0.266 0.734 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.085 0.915 46 H 0.061 0.939 47 H 0.072 0.928 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.742 30.797 11.018 33.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.047 3.953 3 C -0.212 4.212 4 N -0.159 5.159 5 C -0.086 4.086 6 C -0.260 4.260 7 C -0.135 4.135 8 N -0.140 5.140 9 C 0.060 3.940 10 H 0.107 0.893 11 N -0.309 5.309 12 C -0.051 4.051 13 C 0.007 3.993 14 H 0.125 0.875 15 C -0.053 4.053 16 N -0.187 5.187 17 C -0.039 4.039 18 C -0.569 4.569 19 H 0.048 0.952 20 C -0.190 4.190 21 N -0.592 5.592 22 Si 0.769 3.231 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.154 1.154 26 C -0.136 4.136 27 C -0.150 4.150 28 C -0.073 4.073 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.059 0.941 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.217 0.783 37 H 0.163 0.837 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.044 0.956 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.103 0.897 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.932 28.490 11.021 31.118 hybrid contribution -0.250 0.560 -1.083 1.244 sum 5.682 29.050 9.938 31.224 Atomic orbital electron populations 1.22192 0.93097 1.02180 1.04176 1.21473 0.95231 0.93808 0.84835 1.22144 1.01709 0.92209 1.05093 1.49163 1.51006 1.06331 1.09371 1.22395 1.00553 1.00634 0.84979 1.20411 1.13851 0.92596 0.99111 1.23453 1.00227 0.98476 0.91393 1.77028 1.21590 0.95083 1.20318 1.20287 0.96633 0.81549 0.95517 0.89298 1.60680 1.06876 1.34794 1.28573 1.21938 0.97971 0.94628 0.90607 1.18953 1.02559 0.87321 0.90496 0.87451 1.29299 0.91071 0.93299 0.91595 1.81002 1.11058 1.12561 1.14056 1.19546 0.96213 0.96783 0.91373 1.21366 1.11561 1.22519 1.01421 0.95164 1.25987 0.99151 0.94438 0.99473 1.70076 1.39237 1.29791 1.20131 0.85720 0.78887 0.81086 0.77398 1.19884 1.21135 1.15413 1.21482 1.01705 0.98691 0.91702 1.21542 0.98601 0.93104 1.01721 1.20017 0.99694 0.98786 0.88786 0.91364 0.88515 0.94084 0.89360 0.92268 0.88209 0.90267 0.78311 0.83746 0.91742 0.90325 0.92623 0.95585 0.92561 0.90918 0.91887 0.89650 0.92013 0.90950 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.52 71.98 0.69 -1.43 16 2 C 0.15 2.19 3.93 44.99 0.18 2.37 16 3 C -0.15 -1.23 8.84 71.98 0.64 -0.59 16 4 N -0.38 -7.65 3.54 -327.90 -1.16 -8.81 16 5 C 0.06 0.97 10.55 83.34 0.88 1.85 16 6 C -0.25 -4.71 5.89 -20.10 -0.12 -4.83 16 7 C 0.03 0.80 6.34 43.43 0.28 1.08 16 8 N -0.32 -8.53 11.53 -47.15 -0.54 -9.08 16 9 C 0.17 3.99 2.84 44.36 0.13 4.12 16 10 H 0.09 2.09 7.81 -2.38 -0.02 2.07 16 11 N -0.68 -18.53 5.97 -494.43 -2.95 -21.48 16 12 C 0.08 2.38 4.83 86.30 0.42 2.80 16 13 C 0.03 1.08 2.35 -12.60 -0.03 1.05 16 14 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 15 C 0.26 11.47 13.67 89.43 1.22 12.69 16 16 N -0.51 -24.25 18.54 20.01 0.37 -23.88 16 17 C 0.00 0.00 3.49 29.85 0.10 0.10 16 18 C -0.53 -30.02 9.15 25.60 0.23 -29.79 16 19 H 0.03 1.92 7.84 -2.92 -0.02 1.90 16 20 C 0.01 0.37 5.47 84.66 0.46 0.83 16 21 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 22 Si 0.95 43.32 27.47 68.60 1.88 45.20 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 25 H -0.23 -9.36 6.54 99.48 0.65 -8.71 16 26 C -0.10 -1.84 5.49 30.73 0.17 -1.67 16 27 C -0.11 -1.57 5.86 30.73 0.18 -1.39 16 28 C -0.03 -0.47 6.28 30.04 0.19 -0.28 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.08 0.42 7.16 -2.39 -0.02 0.40 16 36 H 0.20 1.73 7.27 -2.91 -0.02 1.71 16 37 H 0.34 9.52 8.46 -89.70 -0.76 8.76 16 38 H 0.06 1.94 7.11 -2.39 -0.02 1.93 16 39 H 0.08 2.32 8.06 -2.39 -0.02 2.30 16 40 H 0.06 2.28 7.20 -2.39 -0.02 2.26 16 41 H 0.03 1.13 7.57 -2.39 -0.02 1.11 16 42 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 43 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 45 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 47 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -74.98 388.80 3.64 -71.34 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.13 Total: 19.75 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 5.61 Total: -13.09 kcal Atomic # 7 Polarization: -119.22 SS G_CDS: -3.98 Total: -123.20 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.20 kcal Total: -74.98 3.64 -71.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764942324.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.249 kcal (2) G-P(sol) polarization free energy of solvation -74.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds