Wall clock time and date at job start Tue Mar 31 2020 11:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47099 * 2 1 4 4 N 1.46501 * 109.47198 * 120.00076 * 2 1 3 5 5 C 1.35386 * 126.01422 * 275.03866 * 4 2 1 6 6 C 1.34576 * 107.60131 * 180.02562 * 5 4 2 7 7 C 1.40559 * 108.01672 * 359.88064 * 6 5 4 8 8 N 1.30121 * 108.27791 * 0.10887 * 7 6 5 9 9 C 1.50945 * 123.43175 * 180.20048 * 7 6 5 10 10 H 1.09003 * 109.71614 * 256.94567 * 9 7 6 11 11 N 1.46901 * 109.71745 * 136.34306 * 9 7 6 12 12 C 1.46905 * 110.99870 * 85.60027 * 11 9 7 13 13 C 1.52993 * 109.47039 * 180.02562 * 12 11 9 14 14 H 1.09008 * 109.47260 * 304.99930 * 13 12 11 15 15 C 1.47199 * 109.47518 * 65.00105 * 13 12 11 16 16 N 5.78819 * 69.82029 * 175.34533 * 2 1 3 17 17 C 1.53002 * 109.47169 * 185.00340 * 13 12 11 18 18 C 1.50706 * 109.47407 * 174.99999 * 17 13 12 19 19 H 1.08003 * 119.99732 * 359.97438 * 18 17 13 20 20 C 1.37872 * 120.00126 * 179.97438 * 18 17 13 21 21 N 1.31509 * 120.00114 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99847 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47207 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47086 * 120.00240 * 22 20 18 25 25 H 1.48501 * 109.46787 * 239.99974 * 22 20 18 26 26 C 1.53373 * 108.24312 * 16.64232 * 9 7 6 27 27 C 1.53021 * 109.75120 * 309.34996 * 26 9 7 28 28 C 1.50877 * 128.32847 * 179.79980 * 6 5 4 29 29 H 1.08993 * 109.47594 * 300.00088 * 1 2 3 30 30 H 1.09003 * 109.46755 * 60.00434 * 1 2 3 31 31 H 1.09004 * 109.46815 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47440 * 240.00286 * 2 1 3 33 33 H 1.09001 * 109.47220 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47019 * 299.99988 * 3 2 1 35 35 H 1.08995 * 109.46531 * 59.99812 * 3 2 1 36 36 H 1.07994 * 126.20347 * 0.02562 * 5 4 2 37 37 H 1.00901 * 111.00067 * 209.55203 * 11 9 7 38 38 H 1.09001 * 109.46798 * 300.00327 * 12 11 9 39 39 H 1.08998 * 109.46961 * 60.00043 * 12 11 9 40 40 H 1.09002 * 109.46730 * 294.99743 * 17 13 12 41 41 H 1.08994 * 109.47589 * 54.99527 * 17 13 12 42 42 H 0.97002 * 120.00726 * 179.97438 * 21 20 18 43 43 H 1.08996 * 109.42210 * 69.43366 * 26 9 7 44 44 H 1.08998 * 109.42551 * 189.31986 * 26 9 7 45 45 H 1.09002 * 109.42578 * 191.78396 * 27 26 9 46 46 H 1.09001 * 109.42849 * 311.67729 * 27 26 9 47 47 H 1.08997 * 109.71587 * 76.98468 * 28 6 5 48 48 H 1.09003 * 109.75142 * 316.35818 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1930 -0.1372 2.4193 6 6 2.6544 -1.0995 3.2392 7 6 2.7653 -2.2874 2.4962 8 7 2.3859 -2.0424 1.2758 9 6 3.2485 -3.5923 3.0813 10 1 4.2789 -3.7733 2.7752 11 7 2.3928 -4.6916 2.6151 12 6 2.8482 -5.1975 1.3133 13 6 1.9343 -6.3382 0.8615 14 1 1.8980 -7.1037 1.6367 15 6 0.5786 -5.8162 0.6237 16 7 -0.4668 -5.4150 0.4409 17 6 2.4801 -6.9475 -0.4315 18 6 1.6513 -8.1478 -0.8104 19 1 0.8187 -8.4465 -0.1906 20 6 1.9559 -8.8646 -1.9481 21 7 2.9694 -8.5006 -2.7029 22 14 0.9290 -10.3528 -2.4172 23 1 -0.1443 -10.5510 -1.4102 24 1 0.3201 -10.1327 -3.7536 25 1 1.7952 -11.5582 -2.4604 26 6 3.1731 -3.4903 4.6097 27 6 3.8655 -2.2082 5.0772 28 6 3.0105 -0.9915 4.7014 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.9975 0.8902 2.6884 37 1 2.3534 -5.4336 3.2977 38 1 2.8146 -4.3928 0.5788 39 1 3.8705 -5.5646 1.4036 40 1 2.4334 -6.2070 -1.2300 41 1 3.5152 -7.2538 -0.2802 42 1 3.1840 -9.0051 -3.5032 43 1 2.1286 -3.4722 4.9207 44 1 3.6692 -4.3524 5.0555 45 1 3.9952 -2.2400 6.1590 46 1 4.8408 -2.1272 4.5974 47 1 2.1008 -0.9816 5.3017 48 1 3.5764 -0.0763 4.8761 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764942326.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:56 Heat of formation + Delta-G solvation = 79.499199 kcal Electronic energy + Delta-G solvation = -26498.199218 eV Core-core repulsion = 22974.738255 eV Total energy + Delta-G solvation = -3523.460963 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.41377 -37.95539 -36.62399 -35.23251 -34.51119 -33.39891 -31.80744 -30.18650 -29.50431 -28.06699 -27.48284 -25.98162 -24.24885 -22.76232 -21.98429 -21.53697 -21.11210 -19.99503 -18.82460 -16.89279 -16.69060 -16.36198 -15.67446 -15.28888 -14.99367 -14.69644 -14.42116 -14.28794 -14.03760 -13.76695 -13.54029 -13.12983 -13.03742 -12.88454 -12.65419 -12.44021 -12.29531 -12.17612 -12.03672 -11.85002 -11.62881 -11.52466 -11.31986 -11.22217 -11.12098 -11.02249 -10.88860 -10.76241 -10.62166 -10.47232 -10.19683 -10.04833 -9.44910 -9.14378 -9.11111 -8.41171 -8.25725 -8.15566 -6.04297 -4.06967 2.04525 2.51765 2.88500 3.31560 3.39565 3.44708 3.89740 3.98931 4.25775 4.33092 4.46894 4.59767 4.65207 4.69515 4.81462 4.85403 4.94671 5.05594 5.16870 5.19542 5.27034 5.33829 5.34907 5.37141 5.43122 5.51861 5.57539 5.66444 5.70300 5.76244 5.79387 5.83849 5.89473 5.93793 5.98589 6.14447 6.16654 6.20324 6.27846 6.58487 6.60157 6.79977 7.17244 7.20100 7.50164 7.60155 7.63930 7.91614 7.97702 8.29768 8.73387 8.98316 9.58038 11.06709 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.013824 B = 0.003345 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.005665 B = 8368.894222 C = 9638.693149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.157 3.843 3 C -0.161 4.161 4 N -0.376 5.376 5 C 0.052 3.948 6 C -0.239 4.239 7 C 0.093 3.907 8 N -0.261 5.261 9 C 0.170 3.830 10 H 0.062 0.938 11 N -0.682 5.682 12 C 0.066 3.934 13 C 0.010 3.990 14 H 0.097 0.903 15 C 0.259 3.741 16 N -0.482 5.482 17 C 0.032 3.968 18 C -0.523 4.523 19 H 0.057 0.943 20 C 0.062 3.938 21 N -0.892 5.892 22 Si 0.890 3.110 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.283 1.283 26 C -0.117 4.117 27 C -0.113 4.113 28 C -0.037 4.037 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.164 0.836 37 H 0.344 0.656 38 H 0.087 0.913 39 H 0.047 0.953 40 H 0.026 0.974 41 H 0.037 0.963 42 H 0.261 0.739 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.049 19.742 14.305 24.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.055 3.945 3 C -0.219 4.219 4 N -0.159 5.159 5 C -0.092 4.092 6 C -0.251 4.251 7 C -0.077 4.077 8 N -0.080 5.080 9 C 0.058 3.942 10 H 0.080 0.920 11 N -0.314 5.314 12 C -0.064 4.064 13 C -0.012 4.012 14 H 0.115 0.885 15 C -0.058 4.058 16 N -0.159 5.159 17 C -0.007 4.007 18 C -0.561 4.561 19 H 0.075 0.925 20 C -0.140 4.140 21 N -0.531 5.531 22 Si 0.718 3.282 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.156 4.156 27 C -0.151 4.151 28 C -0.075 4.075 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.120 0.880 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.181 0.819 37 H 0.163 0.837 38 H 0.105 0.895 39 H 0.065 0.935 40 H 0.044 0.956 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.847 20.316 12.274 23.807 hybrid contribution 0.630 -1.050 0.547 1.341 sum 2.477 19.266 12.821 23.274 Atomic orbital electron populations 1.22232 0.93794 1.03715 1.02538 1.21183 0.94739 0.92389 0.86187 1.22173 1.02163 0.94275 1.03325 1.48947 1.51670 1.07249 1.08066 1.21816 1.02193 0.99224 0.85969 1.19992 1.14243 0.93288 0.97614 1.22188 0.99057 0.95530 0.90962 1.77198 1.18789 0.92099 1.19912 1.19909 0.94432 0.86606 0.93235 0.92016 1.60373 1.53470 1.12321 1.05260 1.22173 0.96005 0.97355 0.90842 1.19191 0.83808 0.95472 1.02687 0.88535 1.28731 0.94302 0.91522 0.91217 1.80879 1.13120 1.10990 1.10899 1.19157 0.96876 0.95660 0.88981 1.21198 1.14372 1.11636 1.08927 0.92474 1.24951 0.95153 0.97671 0.96238 1.69953 1.27933 1.40030 1.15171 0.86551 0.80389 0.82699 0.78537 1.19673 1.21013 1.20892 1.21726 1.02294 0.98134 0.93424 1.21507 0.98996 0.94050 1.00558 1.19936 0.99076 0.97926 0.90578 0.92217 0.90714 0.91266 0.88028 0.91590 0.90155 0.91777 0.81852 0.83698 0.89486 0.93524 0.95586 0.94527 0.92929 0.90556 0.91125 0.91477 0.91765 0.91624 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.52 37.16 0.35 -1.36 16 2 C 0.16 1.69 3.93 -67.93 -0.27 1.42 16 3 C -0.16 -1.16 8.84 37.16 0.33 -0.83 16 4 N -0.38 -5.09 3.54 -54.94 -0.19 -5.28 16 5 C 0.05 0.60 10.56 -17.28 -0.18 0.42 16 6 C -0.24 -2.95 5.89 -104.96 -0.62 -3.57 16 7 C 0.09 1.37 6.62 -82.32 -0.54 0.82 16 8 N -0.26 -4.38 11.47 33.76 0.39 -3.99 16 9 C 0.17 2.16 2.85 -68.55 -0.20 1.97 16 10 H 0.06 0.77 7.81 -51.93 -0.41 0.36 16 11 N -0.68 -9.85 6.01 -107.62 -0.65 -10.50 16 12 C 0.07 1.10 4.83 -3.82 -0.02 1.08 16 13 C 0.01 0.21 2.35 -93.41 -0.22 -0.01 16 14 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 15 C 0.26 5.84 13.66 -20.81 -0.28 5.56 16 16 N -0.48 -11.74 18.53 42.10 0.78 -10.96 16 17 C 0.03 0.77 4.42 -27.88 -0.12 0.65 16 18 C -0.52 -14.36 8.60 -34.44 -0.30 -14.66 16 19 H 0.06 1.57 7.59 -52.48 -0.40 1.17 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 22 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 C -0.12 -1.13 5.15 -26.53 -0.14 -1.27 16 27 C -0.11 -0.94 5.87 -26.52 -0.16 -1.09 16 28 C -0.04 -0.33 6.28 -27.60 -0.17 -0.51 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.10 1.19 8.14 -51.92 -0.42 0.76 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.40 7.16 -51.93 -0.37 0.02 16 36 H 0.16 1.32 7.27 -52.49 -0.38 0.94 16 37 H 0.34 4.21 8.38 -39.29 -0.33 3.89 16 38 H 0.09 1.65 7.04 -51.93 -0.37 1.28 16 39 H 0.05 0.70 8.06 -51.93 -0.42 0.28 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 392.21 15.07 5.91 5.91 Total: -1.00 -34.03 392.21 -8.82 -42.85 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -8.14 Total: 0.37 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -2.63 Total: -9.74 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: 1.06 Total: -56.14 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.03 -8.82 -42.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764942326.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.354 kcal (2) G-P(sol) polarization free energy of solvation -34.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds