Wall clock time and date at job start Tue Mar 31 2020 11:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47099 * 2 1 4 4 N 1.46501 * 109.47198 * 120.00076 * 2 1 3 5 5 C 1.35386 * 126.01422 * 275.03866 * 4 2 1 6 6 C 1.34576 * 107.60131 * 180.02562 * 5 4 2 7 7 C 1.40559 * 108.01672 * 359.88064 * 6 5 4 8 8 N 1.30121 * 108.27791 * 0.10887 * 7 6 5 9 9 C 1.50945 * 123.43175 * 180.20048 * 7 6 5 10 10 H 1.09003 * 109.71614 * 256.94567 * 9 7 6 11 11 N 1.46901 * 109.71745 * 136.34306 * 9 7 6 12 12 C 1.46905 * 110.99870 * 85.60027 * 11 9 7 13 13 C 1.52993 * 109.47039 * 180.02562 * 12 11 9 14 14 H 1.09008 * 109.47260 * 304.99930 * 13 12 11 15 15 C 1.47199 * 109.47518 * 65.00105 * 13 12 11 16 16 N 5.78819 * 69.82029 * 175.34533 * 2 1 3 17 17 C 1.53002 * 109.47169 * 185.00340 * 13 12 11 18 18 C 1.50706 * 109.47407 * 174.99999 * 17 13 12 19 19 H 1.08003 * 119.99732 * 359.97438 * 18 17 13 20 20 C 1.37872 * 120.00126 * 179.97438 * 18 17 13 21 21 N 1.31509 * 120.00114 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99847 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47207 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47086 * 120.00240 * 22 20 18 25 25 H 1.48501 * 109.46787 * 239.99974 * 22 20 18 26 26 C 1.53373 * 108.24312 * 16.64232 * 9 7 6 27 27 C 1.53021 * 109.75120 * 309.34996 * 26 9 7 28 28 C 1.50877 * 128.32847 * 179.79980 * 6 5 4 29 29 H 1.08993 * 109.47594 * 300.00088 * 1 2 3 30 30 H 1.09003 * 109.46755 * 60.00434 * 1 2 3 31 31 H 1.09004 * 109.46815 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47440 * 240.00286 * 2 1 3 33 33 H 1.09001 * 109.47220 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47019 * 299.99988 * 3 2 1 35 35 H 1.08995 * 109.46531 * 59.99812 * 3 2 1 36 36 H 1.07994 * 126.20347 * 0.02562 * 5 4 2 37 37 H 1.00901 * 111.00067 * 209.55203 * 11 9 7 38 38 H 1.09001 * 109.46798 * 300.00327 * 12 11 9 39 39 H 1.08998 * 109.46961 * 60.00043 * 12 11 9 40 40 H 1.09002 * 109.46730 * 294.99743 * 17 13 12 41 41 H 1.08994 * 109.47589 * 54.99527 * 17 13 12 42 42 H 0.97002 * 120.00726 * 179.97438 * 21 20 18 43 43 H 1.08996 * 109.42210 * 69.43366 * 26 9 7 44 44 H 1.08998 * 109.42551 * 189.31986 * 26 9 7 45 45 H 1.09002 * 109.42578 * 191.78396 * 27 26 9 46 46 H 1.09001 * 109.42849 * 311.67729 * 27 26 9 47 47 H 1.08997 * 109.71587 * 76.98468 * 28 6 5 48 48 H 1.09003 * 109.75142 * 316.35818 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1930 -0.1372 2.4193 6 6 2.6544 -1.0995 3.2392 7 6 2.7653 -2.2874 2.4962 8 7 2.3859 -2.0424 1.2758 9 6 3.2485 -3.5923 3.0813 10 1 4.2789 -3.7733 2.7752 11 7 2.3928 -4.6916 2.6151 12 6 2.8482 -5.1975 1.3133 13 6 1.9343 -6.3382 0.8615 14 1 1.8980 -7.1037 1.6367 15 6 0.5786 -5.8162 0.6237 16 7 -0.4668 -5.4150 0.4409 17 6 2.4801 -6.9475 -0.4315 18 6 1.6513 -8.1478 -0.8104 19 1 0.8187 -8.4465 -0.1906 20 6 1.9559 -8.8646 -1.9481 21 7 2.9694 -8.5006 -2.7029 22 14 0.9290 -10.3528 -2.4172 23 1 -0.1443 -10.5510 -1.4102 24 1 0.3201 -10.1327 -3.7536 25 1 1.7952 -11.5582 -2.4604 26 6 3.1731 -3.4903 4.6097 27 6 3.8655 -2.2082 5.0772 28 6 3.0105 -0.9915 4.7014 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.9975 0.8902 2.6884 37 1 2.3534 -5.4336 3.2977 38 1 2.8146 -4.3928 0.5788 39 1 3.8705 -5.5646 1.4036 40 1 2.4334 -6.2070 -1.2300 41 1 3.5152 -7.2538 -0.2802 42 1 3.1840 -9.0051 -3.5032 43 1 2.1286 -3.4722 4.9207 44 1 3.6692 -4.3524 5.0555 45 1 3.9952 -2.2400 6.1590 46 1 4.8408 -2.1272 4.5974 47 1 2.1008 -0.9816 5.3017 48 1 3.5764 -0.0763 4.8761 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764942326.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:55 Heat of formation + Delta-G solvation = 58.516032 kcal Electronic energy + Delta-G solvation = -26499.109117 eV Core-core repulsion = 22974.738255 eV Total energy + Delta-G solvation = -3524.370861 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.34935 -39.12274 -38.00830 -36.34999 -35.74055 -35.18230 -33.44424 -31.39019 -30.36878 -29.24490 -28.25868 -27.54543 -25.23067 -24.24489 -23.56135 -22.67699 -22.00112 -20.89052 -19.73340 -18.60003 -18.35506 -17.54612 -16.81637 -16.51197 -16.18001 -15.98714 -15.71570 -15.31861 -15.14673 -14.76035 -14.72353 -14.37991 -14.25264 -13.90399 -13.79993 -13.71088 -13.63605 -13.38867 -13.18934 -13.07285 -12.98289 -12.85395 -12.70220 -12.52509 -12.45037 -12.33982 -12.13152 -11.99454 -11.93763 -11.67602 -11.50642 -11.40794 -11.23753 -10.89485 -10.57747 -10.15096 -9.37976 -9.08342 -8.20687 -6.29670 1.11018 1.37926 1.40368 1.51733 1.65304 1.91319 2.07690 2.14170 2.40358 3.14019 3.21354 3.37137 3.47325 3.80023 3.82630 3.91016 4.04938 4.05895 4.18495 4.24927 4.35859 4.42312 4.47754 4.53394 4.56650 4.59882 4.71172 4.72429 4.76746 4.81046 4.88331 4.95351 4.99329 5.07122 5.08737 5.11743 5.16378 5.26716 5.36143 5.43874 5.46410 5.53765 5.59268 5.77242 5.86179 6.02595 6.19471 6.32512 6.59271 6.81489 6.92718 6.99156 7.38968 8.90762 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.013824 B = 0.003345 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.005665 B = 8368.894222 C = 9638.693149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.148 3.852 3 C -0.149 4.149 4 N -0.385 5.385 5 C 0.054 3.946 6 C -0.252 4.252 7 C 0.074 3.926 8 N -0.323 5.323 9 C 0.167 3.833 10 H 0.063 0.937 11 N -0.691 5.691 12 C 0.083 3.917 13 C 0.021 3.979 14 H 0.125 0.875 15 C 0.268 3.732 16 N -0.518 5.518 17 C 0.040 3.960 18 C -0.537 4.537 19 H 0.055 0.945 20 C 0.010 3.990 21 N -0.925 5.925 22 Si 0.952 3.048 23 H -0.268 1.268 24 H -0.286 1.286 25 H -0.270 1.270 26 C -0.110 4.110 27 C -0.110 4.110 28 C -0.034 4.034 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.025 0.975 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.201 0.799 37 H 0.357 0.643 38 H 0.059 0.941 39 H 0.065 0.935 40 H -0.008 1.008 41 H 0.035 0.965 42 H 0.264 0.736 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.062 0.938 47 H 0.070 0.930 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.375 20.689 16.573 26.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.046 3.954 3 C -0.207 4.207 4 N -0.168 5.168 5 C -0.090 4.090 6 C -0.264 4.264 7 C -0.095 4.095 8 N -0.143 5.143 9 C 0.056 3.944 10 H 0.080 0.920 11 N -0.324 5.324 12 C -0.047 4.047 13 C -0.001 4.001 14 H 0.142 0.858 15 C -0.048 4.048 16 N -0.196 5.196 17 C 0.001 3.999 18 C -0.575 4.575 19 H 0.073 0.927 20 C -0.189 4.189 21 N -0.565 5.565 22 Si 0.777 3.223 23 H -0.193 1.193 24 H -0.212 1.212 25 H -0.195 1.195 26 C -0.148 4.148 27 C -0.148 4.148 28 C -0.072 4.072 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.044 0.956 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.100 0.900 36 H 0.218 0.782 37 H 0.178 0.822 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.010 0.990 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.081 0.919 47 H 0.089 0.911 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.176 21.259 14.565 25.862 hybrid contribution 0.522 -1.287 -0.197 1.403 sum 2.698 19.972 14.368 24.751 Atomic orbital electron populations 1.22171 0.93677 1.01314 1.04275 1.21411 0.94856 0.94179 0.84908 1.22116 1.01792 0.91609 1.05165 1.49189 1.51677 1.06539 1.09406 1.22451 1.00877 1.00688 0.84992 1.20476 1.14182 0.92449 0.99313 1.22670 0.98853 0.97087 0.90926 1.77111 1.21080 0.94414 1.21663 1.20093 0.93826 0.85180 0.95303 0.91972 1.60231 1.54339 1.13221 1.04631 1.21862 0.96035 0.95220 0.91604 1.19190 0.82596 0.97079 1.01199 0.85781 1.29296 0.94629 0.90604 0.90254 1.80867 1.14472 1.12350 1.11891 1.18961 0.96686 0.94090 0.90142 1.21565 1.14481 1.12468 1.09033 0.92659 1.25756 0.96261 1.00506 0.96365 1.70055 1.29375 1.41359 1.15699 0.85591 0.79021 0.79742 0.77910 1.19266 1.21176 1.19507 1.21711 1.02251 0.99998 0.90847 1.21516 0.98413 0.92816 1.02006 1.20029 0.99700 0.99212 0.88296 0.91063 0.88336 0.95577 0.90240 0.92020 0.88162 0.90021 0.78247 0.82152 0.92268 0.91659 0.98967 0.94630 0.92700 0.91462 0.88995 0.88960 0.91937 0.91129 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 9.52 71.98 0.69 -2.62 16 2 C 0.15 3.24 3.93 44.99 0.18 3.42 16 3 C -0.15 -1.90 8.84 71.98 0.64 -1.26 16 4 N -0.38 -10.59 3.54 -327.72 -1.16 -11.75 16 5 C 0.05 1.18 10.56 83.31 0.88 2.06 16 6 C -0.25 -5.93 5.89 -20.08 -0.12 -6.05 16 7 C 0.07 2.19 6.62 43.46 0.29 2.48 16 8 N -0.32 -11.33 11.47 -47.10 -0.54 -11.87 16 9 C 0.17 4.16 2.85 44.37 0.13 4.29 16 10 H 0.06 1.52 7.81 -2.39 -0.02 1.50 16 11 N -0.69 -19.69 6.01 -494.39 -2.97 -22.66 16 12 C 0.08 2.79 4.83 86.30 0.42 3.21 16 13 C 0.02 0.84 2.35 -12.60 -0.03 0.81 16 14 H 0.12 4.26 8.14 -2.38 -0.02 4.24 16 15 C 0.27 12.34 13.66 89.46 1.22 13.56 16 16 N -0.52 -25.92 18.53 19.99 0.37 -25.55 16 17 C 0.04 1.99 4.42 29.85 0.13 2.12 16 18 C -0.54 -29.75 8.60 25.60 0.22 -29.53 16 19 H 0.06 3.02 7.59 -2.91 -0.02 3.00 16 20 C 0.01 0.56 5.46 84.65 0.46 1.02 16 21 N -0.92 -54.96 13.29 21.44 0.28 -54.67 16 22 Si 0.95 44.70 29.54 68.60 2.03 46.73 16 23 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 25 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 26 C -0.11 -1.88 5.15 30.73 0.16 -1.72 16 27 C -0.11 -1.51 5.87 30.73 0.18 -1.33 16 28 C -0.03 -0.53 6.28 30.03 0.19 -0.34 16 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.08 0.76 7.16 -2.39 -0.02 0.75 16 36 H 0.20 2.63 7.27 -2.91 -0.02 2.61 16 37 H 0.36 8.25 8.38 -89.69 -0.75 7.50 16 38 H 0.06 2.36 7.04 -2.39 -0.02 2.34 16 39 H 0.07 1.94 8.06 -2.39 -0.02 1.92 16 40 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 41 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 43 H 0.07 1.29 8.10 -2.39 -0.02 1.27 16 44 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 47 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -76.61 392.21 3.83 -72.79 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.19 Total: 16.88 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: 5.62 Total: -9.89 kcal Atomic # 7 Polarization: -122.49 SS G_CDS: -4.02 Total: -126.50 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -76.61 3.83 -72.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764942326.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.303 kcal (2) G-P(sol) polarization free energy of solvation -76.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds