Wall clock time and date at job start Tue Mar 31 2020 11:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47599 * 2 1 4 4 N 1.46504 * 109.47302 * 120.00421 * 2 1 3 5 5 C 1.35198 * 126.00178 * 274.93394 * 4 2 1 6 6 C 1.34569 * 107.61830 * 179.97438 * 5 4 2 7 7 C 1.40496 * 108.03771 * 0.11472 * 6 5 4 8 8 N 1.30131 * 108.22352 * 359.87038 * 7 6 5 9 9 C 1.50945 * 123.48608 * 179.83049 * 7 6 5 10 10 H 1.08995 * 109.75165 * 102.98335 * 9 7 6 11 11 N 1.46900 * 109.71726 * 223.61394 * 9 7 6 12 12 C 1.46900 * 110.99761 * 273.74435 * 11 9 7 13 13 C 1.52994 * 109.47023 * 180.02562 * 12 11 9 14 14 H 1.09003 * 109.47481 * 55.00359 * 13 12 11 15 15 C 1.47197 * 109.47219 * 294.99996 * 13 12 11 16 16 N 5.78546 * 136.00337 * 197.02580 * 2 1 3 17 17 C 1.52998 * 109.47095 * 175.00276 * 13 12 11 18 18 C 1.50706 * 109.47348 * 184.99906 * 17 13 12 19 19 H 1.08005 * 119.99758 * 359.97438 * 18 17 13 20 20 C 1.37871 * 120.00102 * 179.97438 * 18 17 13 21 21 N 1.31516 * 120.00217 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47483 * 269.99808 * 22 20 18 24 24 H 1.48499 * 109.47134 * 30.00322 * 22 20 18 25 25 H 1.48507 * 109.46904 * 150.00145 * 22 20 18 26 26 C 1.53377 * 108.20171 * 343.28974 * 9 7 6 27 27 C 1.53030 * 109.75216 * 50.67451 * 26 9 7 28 28 C 1.50881 * 128.33005 * 180.14384 * 6 5 4 29 29 H 1.09001 * 109.46732 * 299.99382 * 1 2 3 30 30 H 1.08992 * 109.47589 * 59.99657 * 1 2 3 31 31 H 1.09002 * 109.47348 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47011 * 240.00000 * 2 1 3 33 33 H 1.09008 * 109.46939 * 59.99956 * 3 2 1 34 34 H 1.08998 * 109.47523 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47125 * 300.00696 * 3 2 1 36 36 H 1.07996 * 126.18693 * 0.02562 * 5 4 2 37 37 H 1.00894 * 110.99679 * 149.79546 * 11 9 7 38 38 H 1.09004 * 109.47027 * 60.00361 * 12 11 9 39 39 H 1.09002 * 109.47026 * 300.00576 * 12 11 9 40 40 H 1.09001 * 109.47671 * 65.00115 * 17 13 12 41 41 H 1.09006 * 109.47297 * 304.99834 * 17 13 12 42 42 H 0.97001 * 119.99646 * 359.97438 * 21 20 18 43 43 H 1.08994 * 109.42579 * 170.75761 * 26 9 7 44 44 H 1.09004 * 109.42410 * 290.58749 * 26 9 7 45 45 H 1.09000 * 109.42992 * 48.36960 * 27 26 9 46 46 H 1.08996 * 109.42630 * 168.26909 * 27 26 9 47 47 H 1.09001 * 109.71412 * 43.68137 * 28 6 5 48 48 H 1.09000 * 109.71508 * 283.03201 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1946 -0.1374 2.4171 6 6 2.6542 -1.0997 3.2378 7 6 2.7675 -2.2871 2.4955 8 7 2.3861 -2.0424 1.2756 9 6 3.2572 -3.5904 3.0787 10 1 2.4114 -4.2531 3.2614 11 7 4.1952 -4.2293 2.1460 12 6 3.4796 -5.0482 1.1584 13 6 4.4874 -5.6964 0.2072 14 1 5.2237 -6.2560 0.7841 15 6 5.1678 -4.6506 -0.5738 16 7 5.6919 -3.8425 -1.1767 17 6 3.7545 -6.6463 -0.7423 18 6 4.7587 -7.3764 -1.5966 19 1 5.8141 -7.1820 -1.4748 20 6 4.3301 -8.2925 -2.5336 21 7 3.0449 -8.5289 -2.6823 22 14 5.5747 -9.1968 -3.5930 23 1 5.8274 -8.4195 -4.8328 24 1 6.8448 -9.3537 -2.8396 25 1 5.0415 -10.5364 -3.9487 26 6 3.9705 -3.2851 4.4018 27 6 3.0752 -2.4104 5.2822 28 6 3.0045 -0.9925 4.7015 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.6768 1.9563 0.8901 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 2.0008 0.8906 2.6852 37 1 4.8808 -4.7784 2.6423 38 1 2.7965 -4.4172 0.5897 39 1 2.9137 -5.8253 1.6723 40 1 3.0818 -6.0741 -1.3812 41 1 3.1787 -7.3674 -0.1620 42 1 2.3986 -8.0589 -2.1324 43 1 4.1877 -4.2189 4.9204 44 1 4.9033 -2.7593 4.1979 45 1 2.0731 -2.8379 5.3181 46 1 3.4877 -2.3685 6.2902 47 1 2.2372 -0.4196 5.2222 48 1 3.9708 -0.5007 4.8133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764942327.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:59 Heat of formation + Delta-G solvation = 75.862274 kcal Electronic energy + Delta-G solvation = -26503.149029 eV Core-core repulsion = 22979.530357 eV Total energy + Delta-G solvation = -3523.618672 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.47842 -38.02999 -36.71851 -35.29001 -34.55877 -33.66722 -31.83696 -30.17978 -29.55208 -28.03326 -27.51842 -25.65948 -24.23674 -22.75425 -22.13605 -21.72531 -21.17770 -20.03924 -18.86390 -17.17897 -16.77644 -16.63251 -15.83215 -15.18516 -14.92606 -14.73325 -14.55160 -14.18332 -13.97171 -13.71048 -13.45553 -13.27309 -13.19615 -13.08221 -12.80337 -12.51378 -12.34759 -12.18996 -12.01999 -11.95709 -11.72774 -11.53107 -11.48780 -11.27704 -11.18247 -11.04113 -10.87417 -10.79855 -10.65281 -10.33716 -10.11628 -10.08301 -9.78975 -9.17689 -8.60460 -8.36890 -8.31735 -8.20575 -6.38283 -4.08649 2.00486 2.47223 2.83774 3.46447 3.48807 3.64468 3.80759 3.89579 4.20926 4.27833 4.54768 4.55940 4.60073 4.64768 4.77579 4.81291 4.89310 4.95642 5.12171 5.14500 5.21474 5.30863 5.31952 5.35050 5.40505 5.46986 5.55259 5.60403 5.64795 5.70538 5.74409 5.77380 5.82659 5.85000 5.87752 6.02958 6.11777 6.15880 6.23222 6.43522 6.46618 6.74973 7.11379 7.13045 7.17271 7.33251 7.54231 7.92948 8.10111 8.41707 8.66424 8.84822 9.62500 11.02608 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.013708 B = 0.003328 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.086722 B = 8410.731906 C = 9645.167400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.155 3.845 3 C -0.162 4.162 4 N -0.375 5.375 5 C 0.053 3.947 6 C -0.240 4.240 7 C 0.093 3.907 8 N -0.263 5.263 9 C 0.170 3.830 10 H 0.062 0.938 11 N -0.682 5.682 12 C 0.066 3.934 13 C 0.018 3.982 14 H 0.098 0.902 15 C 0.258 3.742 16 N -0.478 5.478 17 C 0.019 3.981 18 C -0.604 4.604 19 H 0.051 0.949 20 C 0.020 3.980 21 N -0.910 5.910 22 Si 1.069 2.931 23 H -0.288 1.288 24 H -0.288 1.288 25 H -0.284 1.284 26 C -0.118 4.118 27 C -0.113 4.113 28 C -0.037 4.037 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.165 0.835 37 H 0.344 0.656 38 H 0.086 0.914 39 H 0.046 0.954 40 H 0.016 0.984 41 H 0.027 0.973 42 H 0.269 0.731 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.262 17.711 17.063 25.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.054 3.946 3 C -0.220 4.220 4 N -0.158 5.158 5 C -0.091 4.091 6 C -0.252 4.252 7 C -0.077 4.077 8 N -0.082 5.082 9 C 0.058 3.942 10 H 0.080 0.920 11 N -0.313 5.313 12 C -0.064 4.064 13 C -0.004 4.004 14 H 0.116 0.884 15 C -0.059 4.059 16 N -0.155 5.155 17 C -0.020 4.020 18 C -0.642 4.642 19 H 0.069 0.931 20 C -0.184 4.184 21 N -0.546 5.546 22 Si 0.897 3.103 23 H -0.215 1.215 24 H -0.214 1.214 25 H -0.209 1.209 26 C -0.156 4.156 27 C -0.151 4.151 28 C -0.075 4.075 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.120 0.880 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.182 0.818 37 H 0.164 0.836 38 H 0.105 0.895 39 H 0.064 0.936 40 H 0.035 0.965 41 H 0.045 0.955 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.517 17.950 13.214 22.742 hybrid contribution -0.515 0.581 2.554 2.669 sum -5.032 18.531 15.768 24.847 Atomic orbital electron populations 1.22223 0.93824 1.03349 1.02677 1.21196 0.94571 0.92590 0.86292 1.22173 1.02416 0.94159 1.03277 1.48888 1.51497 1.07344 1.08059 1.21783 1.02357 0.99160 0.85839 1.19981 1.14255 0.93225 0.97728 1.22166 0.98635 0.96044 0.90885 1.77195 1.19095 0.92578 1.19332 1.19910 0.94157 0.89824 0.90275 0.92013 1.60354 1.16387 1.37036 1.17568 1.22178 0.95787 0.95228 0.93234 1.19010 0.96286 0.90522 0.94544 0.88403 1.28721 0.92442 0.92518 0.92233 1.80957 1.10776 1.12482 1.11268 1.19269 0.96086 0.92971 0.93666 1.22005 0.93733 1.26000 1.22462 0.93087 1.25780 0.99446 0.96121 0.97101 1.70767 1.01206 1.42270 1.40396 0.83544 0.74442 0.76438 0.75881 1.21499 1.21358 1.20919 1.21734 0.99580 1.00418 0.93878 1.21507 1.00138 0.95078 0.98373 1.19942 1.00737 0.96883 0.89963 0.92159 0.90629 0.91538 0.88006 0.91762 0.91492 0.90114 0.81807 0.83639 0.89545 0.93622 0.96525 0.95480 0.92023 0.91111 0.90524 0.91768 0.91427 0.91660 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.52 37.16 0.35 -1.08 16 2 C 0.16 1.66 3.93 -67.93 -0.27 1.39 16 3 C -0.16 -1.26 8.83 37.16 0.33 -0.93 16 4 N -0.38 -5.04 3.54 -54.99 -0.19 -5.24 16 5 C 0.05 0.61 10.55 -17.37 -0.18 0.42 16 6 C -0.24 -2.94 5.89 -104.98 -0.62 -3.56 16 7 C 0.09 1.36 6.62 -82.34 -0.55 0.81 16 8 N -0.26 -4.40 11.54 33.75 0.39 -4.01 16 9 C 0.17 2.16 2.86 -68.55 -0.20 1.96 16 10 H 0.06 0.77 7.80 -51.93 -0.41 0.36 16 11 N -0.68 -9.86 6.01 -107.62 -0.65 -10.51 16 12 C 0.07 1.09 4.83 -3.83 -0.02 1.07 16 13 C 0.02 0.37 2.35 -93.41 -0.22 0.15 16 14 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 15 C 0.26 5.87 13.67 -20.75 -0.28 5.59 16 16 N -0.48 -11.74 18.54 42.16 0.78 -10.96 16 17 C 0.02 0.45 3.74 -27.88 -0.10 0.35 16 18 C -0.60 -16.79 8.60 -34.44 -0.30 -17.09 16 19 H 0.05 1.43 7.59 -52.48 -0.40 1.03 16 20 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 21 N -0.91 -27.43 13.65 55.43 0.76 -26.67 16 22 Si 1.07 25.64 29.90 -169.99 -5.08 20.56 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 C -0.12 -1.13 5.15 -26.52 -0.14 -1.26 16 27 C -0.11 -0.93 5.87 -26.52 -0.16 -1.08 16 28 C -0.04 -0.33 6.28 -27.59 -0.17 -0.50 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.10 1.25 8.14 -51.92 -0.42 0.83 16 33 H 0.06 0.41 7.16 -51.92 -0.37 0.03 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.16 1.31 7.26 -52.49 -0.38 0.93 16 37 H 0.34 4.24 8.37 -39.29 -0.33 3.91 16 38 H 0.09 1.63 7.11 -51.93 -0.37 1.26 16 39 H 0.05 0.68 8.06 -51.93 -0.42 0.27 16 40 H 0.02 0.43 8.01 -51.93 -0.42 0.02 16 41 H 0.03 0.65 8.01 -51.93 -0.42 0.23 16 42 H 0.27 7.99 7.22 -40.82 -0.29 7.70 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 45 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 391.00 15.07 5.89 5.89 Total: -1.00 -34.82 391.00 -8.80 -43.63 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -8.09 Total: 0.61 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -2.61 Total: -13.29 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: 1.09 Total: -57.39 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.08 Total: 20.56 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.82 -8.80 -43.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764942327.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.488 kcal (2) G-P(sol) polarization free energy of solvation -34.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds