Wall clock time and date at job start Tue Mar 31 2020 11:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47599 * 2 1 4 4 N 1.46504 * 109.47302 * 120.00421 * 2 1 3 5 5 C 1.35198 * 126.00178 * 274.93394 * 4 2 1 6 6 C 1.34569 * 107.61830 * 179.97438 * 5 4 2 7 7 C 1.40496 * 108.03771 * 0.11472 * 6 5 4 8 8 N 1.30131 * 108.22352 * 359.87038 * 7 6 5 9 9 C 1.50945 * 123.48608 * 179.83049 * 7 6 5 10 10 H 1.08995 * 109.75165 * 102.98335 * 9 7 6 11 11 N 1.46900 * 109.71726 * 223.61394 * 9 7 6 12 12 C 1.46900 * 110.99761 * 273.74435 * 11 9 7 13 13 C 1.52994 * 109.47023 * 180.02562 * 12 11 9 14 14 H 1.09003 * 109.47481 * 55.00359 * 13 12 11 15 15 C 1.47197 * 109.47219 * 294.99996 * 13 12 11 16 16 N 5.78546 * 136.00337 * 197.02580 * 2 1 3 17 17 C 1.52998 * 109.47095 * 175.00276 * 13 12 11 18 18 C 1.50706 * 109.47348 * 184.99906 * 17 13 12 19 19 H 1.08005 * 119.99758 * 359.97438 * 18 17 13 20 20 C 1.37871 * 120.00102 * 179.97438 * 18 17 13 21 21 N 1.31516 * 120.00217 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47483 * 269.99808 * 22 20 18 24 24 H 1.48499 * 109.47134 * 30.00322 * 22 20 18 25 25 H 1.48507 * 109.46904 * 150.00145 * 22 20 18 26 26 C 1.53377 * 108.20171 * 343.28974 * 9 7 6 27 27 C 1.53030 * 109.75216 * 50.67451 * 26 9 7 28 28 C 1.50881 * 128.33005 * 180.14384 * 6 5 4 29 29 H 1.09001 * 109.46732 * 299.99382 * 1 2 3 30 30 H 1.08992 * 109.47589 * 59.99657 * 1 2 3 31 31 H 1.09002 * 109.47348 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47011 * 240.00000 * 2 1 3 33 33 H 1.09008 * 109.46939 * 59.99956 * 3 2 1 34 34 H 1.08998 * 109.47523 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47125 * 300.00696 * 3 2 1 36 36 H 1.07996 * 126.18693 * 0.02562 * 5 4 2 37 37 H 1.00894 * 110.99679 * 149.79546 * 11 9 7 38 38 H 1.09004 * 109.47027 * 60.00361 * 12 11 9 39 39 H 1.09002 * 109.47026 * 300.00576 * 12 11 9 40 40 H 1.09001 * 109.47671 * 65.00115 * 17 13 12 41 41 H 1.09006 * 109.47297 * 304.99834 * 17 13 12 42 42 H 0.97001 * 119.99646 * 359.97438 * 21 20 18 43 43 H 1.08994 * 109.42579 * 170.75761 * 26 9 7 44 44 H 1.09004 * 109.42410 * 290.58749 * 26 9 7 45 45 H 1.09000 * 109.42992 * 48.36960 * 27 26 9 46 46 H 1.08996 * 109.42630 * 168.26909 * 27 26 9 47 47 H 1.09001 * 109.71412 * 43.68137 * 28 6 5 48 48 H 1.09000 * 109.71508 * 283.03201 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1946 -0.1374 2.4171 6 6 2.6542 -1.0997 3.2378 7 6 2.7675 -2.2871 2.4955 8 7 2.3861 -2.0424 1.2756 9 6 3.2572 -3.5904 3.0787 10 1 2.4114 -4.2531 3.2614 11 7 4.1952 -4.2293 2.1460 12 6 3.4796 -5.0482 1.1584 13 6 4.4874 -5.6964 0.2072 14 1 5.2237 -6.2560 0.7841 15 6 5.1678 -4.6506 -0.5738 16 7 5.6919 -3.8425 -1.1767 17 6 3.7545 -6.6463 -0.7423 18 6 4.7587 -7.3764 -1.5966 19 1 5.8141 -7.1820 -1.4748 20 6 4.3301 -8.2925 -2.5336 21 7 3.0449 -8.5289 -2.6823 22 14 5.5747 -9.1968 -3.5930 23 1 5.8274 -8.4195 -4.8328 24 1 6.8448 -9.3537 -2.8396 25 1 5.0415 -10.5364 -3.9487 26 6 3.9705 -3.2851 4.4018 27 6 3.0752 -2.4104 5.2822 28 6 3.0045 -0.9925 4.7015 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.6768 1.9563 0.8901 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 2.0008 0.8906 2.6852 37 1 4.8808 -4.7784 2.6423 38 1 2.7965 -4.4172 0.5897 39 1 2.9137 -5.8253 1.6723 40 1 3.0818 -6.0741 -1.3812 41 1 3.1787 -7.3674 -0.1620 42 1 2.3986 -8.0589 -2.1324 43 1 4.1877 -4.2189 4.9204 44 1 4.9033 -2.7593 4.1979 45 1 2.0731 -2.8379 5.3181 46 1 3.4877 -2.3685 6.2902 47 1 2.2372 -0.4196 5.2222 48 1 3.9708 -0.5007 4.8133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764942327.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:58 Heat of formation + Delta-G solvation = 54.225397 kcal Electronic energy + Delta-G solvation = -26504.087274 eV Core-core repulsion = 22979.530357 eV Total energy + Delta-G solvation = -3524.556917 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.40778 -39.21937 -38.09287 -36.40363 -35.88747 -35.38378 -33.42565 -31.37661 -30.40204 -29.13512 -28.25887 -27.27933 -25.24239 -24.35293 -23.80240 -22.73452 -22.05106 -20.92701 -19.76625 -19.11794 -18.43126 -17.60259 -16.84845 -16.33433 -15.99599 -15.83317 -15.64467 -15.41429 -15.33627 -15.22227 -14.85633 -14.35156 -14.06858 -14.04407 -13.92948 -13.81314 -13.62754 -13.49507 -13.25895 -13.16731 -13.02358 -12.82587 -12.69001 -12.49654 -12.37981 -12.29839 -12.07116 -11.98967 -11.93318 -11.73340 -11.65869 -11.51955 -11.06068 -10.66702 -10.55468 -10.19573 -9.45444 -9.11792 -8.66457 -6.37212 1.07755 1.52140 1.59356 1.61301 1.77583 1.87053 1.97192 2.03636 2.54975 3.11001 3.17862 3.27408 3.43010 3.76062 3.78528 3.88067 4.01570 4.02627 4.12372 4.15864 4.24371 4.37906 4.44417 4.47460 4.55179 4.57727 4.59847 4.66001 4.70045 4.72249 4.85543 4.88080 4.93139 4.99112 5.05059 5.08574 5.13440 5.16298 5.22605 5.32473 5.35897 5.43004 5.50301 5.81622 5.89218 6.01524 6.18192 6.28838 6.51648 6.59003 6.81262 6.94990 7.41394 8.75233 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.013708 B = 0.003328 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.086722 B = 8410.731906 C = 9645.167400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.145 3.855 3 C -0.152 4.152 4 N -0.383 5.383 5 C 0.055 3.945 6 C -0.253 4.253 7 C 0.073 3.927 8 N -0.325 5.325 9 C 0.168 3.832 10 H 0.063 0.937 11 N -0.690 5.690 12 C 0.083 3.917 13 C 0.028 3.972 14 H 0.123 0.877 15 C 0.266 3.734 16 N -0.514 5.514 17 C 0.024 3.976 18 C -0.614 4.614 19 H 0.047 0.953 20 C -0.031 4.031 21 N -0.935 5.935 22 Si 1.110 2.890 23 H -0.285 1.285 24 H -0.267 1.267 25 H -0.277 1.277 26 C -0.110 4.110 27 C -0.109 4.109 28 C -0.034 4.034 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.039 0.961 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.050 0.950 35 H 0.100 0.900 36 H 0.201 0.799 37 H 0.358 0.642 38 H 0.059 0.941 39 H 0.065 0.935 40 H -0.012 1.012 41 H 0.032 0.968 42 H 0.259 0.741 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.092 0.908 47 H 0.084 0.916 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.808 18.773 19.391 27.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.044 3.956 3 C -0.210 4.210 4 N -0.166 5.166 5 C -0.090 4.090 6 C -0.265 4.265 7 C -0.095 4.095 8 N -0.145 5.145 9 C 0.056 3.944 10 H 0.080 0.920 11 N -0.324 5.324 12 C -0.047 4.047 13 C 0.006 3.994 14 H 0.141 0.859 15 C -0.050 4.050 16 N -0.191 5.191 17 C -0.015 4.015 18 C -0.652 4.652 19 H 0.066 0.934 20 C -0.230 4.230 21 N -0.573 5.573 22 Si 0.932 3.068 23 H -0.212 1.212 24 H -0.191 1.191 25 H -0.202 1.202 26 C -0.148 4.148 27 C -0.147 4.147 28 C -0.072 4.072 29 H 0.093 0.907 30 H 0.116 0.884 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.119 0.881 36 H 0.218 0.782 37 H 0.179 0.821 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.006 0.994 41 H 0.050 0.950 42 H 0.069 0.931 43 H 0.110 0.890 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.111 0.889 47 H 0.103 0.897 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.057 19.021 15.572 24.915 hybrid contribution -0.698 0.316 1.815 1.970 sum -4.755 19.337 17.387 26.436 Atomic orbital electron populations 1.22151 0.92363 1.02112 1.04446 1.21421 0.95761 0.93741 0.84662 1.22132 1.01287 0.92205 1.05364 1.49134 1.51495 1.06651 1.09368 1.22416 1.01068 1.00608 0.84864 1.20464 1.14176 0.92368 0.99461 1.22645 0.98426 0.97602 0.90872 1.77106 1.21353 0.94886 1.21138 1.20093 0.94117 0.89042 0.91116 0.91972 1.60217 1.17082 1.36850 1.18222 1.21867 0.94470 0.95303 0.93091 1.19033 0.96917 0.89392 0.94019 0.85900 1.29306 0.91672 0.92343 0.91687 1.80943 1.12234 1.13756 1.12202 1.19125 0.95318 0.93266 0.93801 1.22379 0.94192 1.25864 1.22735 0.93437 1.27144 1.00256 0.97119 0.98436 1.70882 1.01915 1.43278 1.41186 0.83017 0.73308 0.75665 0.74781 1.21151 1.19131 1.20241 1.21721 0.98968 1.01719 0.92434 1.21516 0.99867 0.94204 0.99149 1.20035 1.01540 0.97765 0.87902 0.90686 0.88446 0.94224 0.91070 0.89555 0.93113 0.88100 0.78204 0.82132 0.92237 0.91662 0.99361 0.95005 0.93088 0.89004 0.91405 0.91956 0.88907 0.89746 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.52 71.98 0.69 -1.97 16 2 C 0.15 3.18 3.93 44.99 0.18 3.36 16 3 C -0.15 -2.17 8.83 71.98 0.64 -1.53 16 4 N -0.38 -10.48 3.54 -327.89 -1.16 -11.64 16 5 C 0.05 1.18 10.55 83.33 0.88 2.06 16 6 C -0.25 -5.89 5.89 -20.10 -0.12 -6.01 16 7 C 0.07 2.17 6.62 43.44 0.29 2.45 16 8 N -0.32 -11.34 11.54 -47.13 -0.54 -11.88 16 9 C 0.17 4.14 2.86 44.37 0.13 4.27 16 10 H 0.06 1.51 7.80 -2.39 -0.02 1.49 16 11 N -0.69 -19.62 6.01 -494.40 -2.97 -22.59 16 12 C 0.08 2.77 4.83 86.30 0.42 3.19 16 13 C 0.03 1.12 2.35 -12.60 -0.03 1.09 16 14 H 0.12 4.30 8.14 -2.39 -0.02 4.28 16 15 C 0.27 12.30 13.67 89.44 1.22 13.52 16 16 N -0.51 -25.79 18.54 20.01 0.37 -25.41 16 17 C 0.02 1.17 3.74 29.85 0.11 1.28 16 18 C -0.61 -34.31 8.60 25.60 0.22 -34.09 16 19 H 0.05 2.64 7.59 -2.91 -0.02 2.62 16 20 C -0.03 -1.79 5.46 84.65 0.46 -1.33 16 21 N -0.94 -57.22 13.65 21.45 0.29 -56.92 16 22 Si 1.11 51.26 29.90 68.60 2.05 53.31 16 23 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 C -0.11 -1.87 5.15 30.73 0.16 -1.71 16 27 C -0.11 -1.49 5.87 30.73 0.18 -1.31 16 28 C -0.03 -0.52 6.28 30.04 0.19 -0.34 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.09 0.85 7.16 -2.38 -0.02 0.83 16 34 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.20 2.59 7.26 -2.91 -0.02 2.57 16 37 H 0.36 8.27 8.37 -89.70 -0.75 7.51 16 38 H 0.06 2.34 7.11 -2.39 -0.02 2.33 16 39 H 0.07 1.91 8.06 -2.39 -0.02 1.89 16 40 H -0.01 -0.66 8.01 -2.39 -0.02 -0.68 16 41 H 0.03 1.54 8.01 -2.38 -0.02 1.52 16 42 H 0.26 15.86 7.22 -92.71 -0.67 15.19 16 43 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 44 H 0.07 1.29 8.10 -2.39 -0.02 1.27 16 45 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 46 H 0.09 0.83 8.14 -2.39 -0.02 0.82 16 47 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -78.16 391.00 3.94 -74.22 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.29 Total: 17.98 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: 5.60 Total: -17.06 kcal Atomic # 7 Polarization: -124.44 SS G_CDS: -4.01 Total: -128.45 kcal Atomic # 14 Polarization: 51.26 SS G_CDS: 2.05 Total: 53.31 kcal Total: -78.16 3.94 -74.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764942327.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.449 kcal (2) G-P(sol) polarization free energy of solvation -78.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds