Wall clock time and date at job start Tue Mar 31 2020 12:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 120.00095 * 2 1 4 4 C 1.50702 * 109.47185 * 269.99701 * 3 2 1 5 5 H 1.08006 * 119.99716 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00088 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99769 * 180.02562 * 6 4 3 8 8 Si 1.86795 * 120.00027 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47299 * 90.00338 * 8 6 4 10 10 H 1.48503 * 109.47031 * 210.00288 * 8 6 4 11 11 H 1.48500 * 109.47335 * 329.99878 * 8 6 4 12 12 C 1.39671 * 120.00033 * 179.97438 * 2 1 3 13 13 C 1.38913 * 120.07747 * 0.02562 * 12 2 1 14 14 C 1.38103 * 119.92665 * 179.97438 * 13 12 2 15 15 C 1.38281 * 120.07233 * 359.97438 * 14 13 12 16 16 C 1.50707 * 119.92244 * 180.02562 * 15 14 13 17 17 N 1.46897 * 109.47187 * 89.99661 * 16 15 14 18 18 C 1.46899 * 110.99599 * 66.04747 * 17 16 15 19 19 C 1.46894 * 111.00269 * 190.00093 * 17 16 15 20 20 C 1.53783 * 113.61701 * 180.02562 * 19 17 16 21 21 C 1.53785 * 87.07804 * 219.93397 * 20 19 17 22 22 C 1.53006 * 113.61096 * 139.97884 * 21 20 19 23 23 C 1.53002 * 113.61471 * 270.79457 * 21 20 19 24 24 C 1.53781 * 87.17620 * 25.38900 * 21 20 19 25 25 C 1.38285 * 120.15375 * 0.27543 * 15 14 13 26 26 C 1.38102 * 120.06994 * 359.45363 * 25 15 14 27 27 H 1.08993 * 109.47463 * 270.00116 * 1 2 3 28 28 H 1.08999 * 109.47017 * 30.00544 * 1 2 3 29 29 H 1.09000 * 109.46930 * 150.00229 * 1 2 3 30 30 H 1.09006 * 109.46977 * 29.99581 * 3 2 1 31 31 H 1.08998 * 109.47479 * 149.99945 * 3 2 1 32 32 H 0.97003 * 120.00098 * 180.02562 * 7 6 4 33 33 H 1.08000 * 120.02989 * 359.95225 * 13 12 2 34 34 H 1.08001 * 119.95838 * 179.97438 * 14 13 12 35 35 H 1.09004 * 109.47130 * 330.00225 * 16 15 14 36 36 H 1.08994 * 109.47249 * 210.00011 * 16 15 14 37 37 H 1.08996 * 109.47270 * 183.95197 * 18 17 16 38 38 H 1.08998 * 109.47472 * 303.95277 * 18 17 16 39 39 H 1.09007 * 109.47209 * 63.95555 * 18 17 16 40 40 H 1.09004 * 112.85111 * 311.20201 * 19 17 16 41 41 H 1.08997 * 113.61737 * 105.38463 * 20 19 17 42 42 H 1.09000 * 113.61138 * 334.47603 * 20 19 17 43 43 H 1.09001 * 109.47002 * 181.52532 * 22 21 20 44 44 H 1.08993 * 109.46955 * 301.52970 * 22 21 20 45 45 H 1.09000 * 109.47050 * 61.52798 * 22 21 20 46 46 H 1.08999 * 109.47105 * 298.47603 * 23 21 20 47 47 H 1.09000 * 109.46611 * 58.47476 * 23 21 20 48 48 H 1.08998 * 109.47047 * 178.47668 * 23 21 20 49 49 H 1.08998 * 113.61545 * 89.15547 * 24 21 20 50 50 H 1.08993 * 113.61303 * 220.06004 * 24 21 20 51 51 H 1.07995 * 119.95957 * 179.70412 * 25 15 14 52 52 H 1.08008 * 120.03124 * 180.27200 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.3449 3.2577 -2.9127 8 14 3.7330 3.9292 -0.2530 9 1 5.1065 3.5082 0.1229 10 1 3.7477 5.3559 -0.6645 11 1 2.8271 3.7593 0.9114 12 6 2.1634 -1.2096 0.0005 13 6 1.4704 -2.4135 0.0005 14 6 2.1641 -3.6077 0.0005 15 6 3.5469 -3.6058 0.0000 16 6 4.3005 -4.9110 -0.0006 17 7 4.5447 -5.3348 -1.3857 18 6 5.4551 -4.4053 -2.0678 19 6 5.0629 -6.7085 -1.4324 20 6 5.3409 -7.2140 -2.8579 21 6 4.7655 -8.5666 -2.4060 22 6 3.8868 -9.2420 -3.4609 23 6 5.8130 -9.5107 -1.8122 24 6 3.9678 -7.7873 -1.3471 25 6 4.2399 -2.4092 0.0052 26 6 3.5525 -1.2114 -0.0004 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1384 0.5138 32 1 3.8218 4.0836 -3.0900 33 1 0.3904 -2.4156 0.0009 34 1 1.6259 -4.5441 0.0010 35 1 3.7116 -5.6708 0.5133 36 1 5.2530 -4.7808 0.5129 37 1 5.5636 -4.7026 -3.1108 38 1 5.0475 -3.3956 -2.0184 39 1 6.4298 -4.4279 -1.5803 40 1 5.8904 -6.8725 -0.7421 41 1 6.4009 -7.2523 -3.1087 42 1 4.7418 -6.7180 -3.6216 43 1 3.4946 -10.1776 -3.0621 44 1 3.0590 -8.5823 -3.7207 45 1 4.4810 -9.4474 -4.3513 46 1 6.5662 -9.7382 -2.5666 47 1 6.2890 -9.0327 -0.9560 48 1 5.3300 -10.4335 -1.4912 49 1 2.9928 -7.4483 -1.6970 50 1 3.9210 -8.2878 -0.3799 51 1 5.3198 -2.4114 0.0096 52 1 4.0944 -0.2771 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839183495.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:20 Heat of formation + Delta-G solvation = 53.807556 kcal Electronic energy + Delta-G solvation = -26495.152177 eV Core-core repulsion = 23074.117484 eV Total energy + Delta-G solvation = -3421.034693 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.16171 -39.03001 -36.66060 -35.01897 -32.62333 -30.75398 -30.55185 -29.47945 -28.29074 -27.67186 -27.26625 -25.61784 -24.92663 -23.69327 -22.00195 -21.40298 -20.54736 -19.51591 -18.41163 -16.93740 -16.66034 -16.09223 -15.41369 -15.32458 -15.00807 -14.56902 -14.27275 -14.09752 -13.95325 -13.63076 -13.54618 -13.21010 -13.00867 -12.91385 -12.86479 -12.80066 -12.41282 -12.01876 -11.94222 -11.80559 -11.62889 -11.59852 -11.50322 -11.40015 -11.11551 -10.91263 -10.87939 -10.76184 -10.60159 -10.26481 -10.19006 -10.13475 -10.03521 -9.57981 -8.88121 -8.65921 -8.29687 -8.18433 -6.39149 -6.14473 -4.14372 2.08293 2.20208 3.21132 3.29043 3.29835 4.01029 4.08733 4.27507 4.32048 4.46719 4.55377 4.63047 4.73699 5.04011 5.15194 5.15912 5.24850 5.34384 5.38843 5.44516 5.52051 5.55131 5.60119 5.60533 5.65244 5.68877 5.70885 5.76680 5.78139 5.81173 5.84526 5.92616 5.95511 5.97614 6.02933 6.18715 6.24374 6.25629 6.33099 6.37241 6.38994 6.56925 6.75270 6.76044 7.02694 7.07108 7.11573 7.25845 7.33040 7.52973 7.55654 8.05811 8.35544 8.51930 8.93501 9.45431 10.98579 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020242 B = 0.002612 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.929363 B =10718.515378 C =11248.734000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.612 5.612 3 C 0.221 3.779 4 C -0.533 4.533 5 H 0.076 0.924 6 C 0.072 3.928 7 N -0.895 5.895 8 Si 0.872 3.128 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.240 3.760 13 C -0.218 4.218 14 C -0.052 4.052 15 C -0.162 4.162 16 C 0.111 3.889 17 N -0.524 5.524 18 C 0.022 3.978 19 C 0.054 3.946 20 C -0.121 4.121 21 C -0.092 4.092 22 C -0.133 4.133 23 C -0.128 4.128 24 C -0.116 4.116 25 C -0.067 4.067 26 C -0.188 4.188 27 H 0.036 0.964 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.265 0.735 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.072 0.928 36 H 0.031 0.969 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.018 0.982 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.052 0.948 44 H 0.058 0.942 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.055 0.945 48 H 0.056 0.944 49 H 0.091 0.909 50 H 0.061 0.939 51 H 0.107 0.893 52 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.246 -22.264 4.690 22.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.318 5.318 3 C 0.099 3.901 4 C -0.572 4.572 5 H 0.094 0.906 6 C -0.131 4.131 7 N -0.533 5.533 8 Si 0.699 3.301 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.134 3.866 13 C -0.241 4.241 14 C -0.071 4.071 15 C -0.165 4.165 16 C -0.016 4.016 17 N -0.248 5.248 18 C -0.126 4.126 19 C -0.055 4.055 20 C -0.158 4.158 21 C -0.093 4.093 22 C -0.190 4.190 23 C -0.185 4.185 24 C -0.153 4.153 25 C -0.086 4.086 26 C -0.210 4.210 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.037 0.963 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.109 0.891 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.109 0.891 50 H 0.080 0.920 51 H 0.125 0.875 52 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.765 -21.879 4.334 22.374 hybrid contribution 1.186 0.845 0.891 1.707 sum 2.951 -21.033 5.225 21.873 Atomic orbital electron populations 1.21486 0.81030 1.02331 0.99657 1.46700 1.04394 1.03922 1.76772 1.19650 0.91889 0.80740 0.97779 1.21483 1.36869 1.07207 0.91641 0.90550 1.24901 0.95452 0.97251 0.95450 1.69904 1.41267 1.23494 1.18633 0.86917 0.79911 0.80209 0.83091 1.19931 1.20960 1.19032 1.17904 0.91413 0.85873 0.91401 1.20562 0.99062 0.91322 1.13181 1.20480 0.93190 0.96501 0.96926 1.19152 0.93590 0.93328 1.10437 1.20799 0.97677 0.94684 0.88456 1.62265 1.45654 1.00907 1.15931 1.22410 0.93631 0.98059 0.98507 1.23127 0.96487 0.88569 0.97280 1.23128 1.00633 0.95359 0.96711 1.21691 0.96600 0.94212 0.96748 1.21696 0.99146 1.00254 0.97925 1.21596 0.97856 0.98600 1.00434 1.23136 0.98514 0.95371 0.98321 1.20654 0.98429 0.91698 0.97851 1.20776 0.92649 0.98526 1.09062 0.94582 0.91309 0.92367 0.95485 0.95544 0.92521 0.86820 0.87262 0.90959 0.95092 0.91778 0.90179 0.96302 0.92264 0.91948 0.89137 0.92847 0.92279 0.92789 0.92525 0.92608 0.92482 0.89079 0.92021 0.87451 0.85523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.71 10.19 59.85 0.61 2.32 16 2 N -0.61 -12.85 2.99 -181.00 -0.54 -13.39 16 3 C 0.22 5.20 3.98 -5.19 -0.02 5.18 16 4 C -0.53 -14.83 9.94 -34.44 -0.34 -15.18 16 5 H 0.08 2.39 8.06 -52.48 -0.42 1.97 16 6 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 7 N -0.89 -27.02 13.96 55.43 0.77 -26.24 16 8 Si 0.87 20.73 27.47 -169.99 -4.67 16.06 16 9 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 12 C 0.24 4.80 6.55 -83.79 -0.55 4.26 16 13 C -0.22 -3.79 9.21 -39.38 -0.36 -4.15 16 14 C -0.05 -0.81 9.69 -39.62 -0.38 -1.20 16 15 C -0.16 -2.51 4.89 -104.59 -0.51 -3.02 16 16 C 0.11 1.43 5.09 -4.97 -0.03 1.40 16 17 N -0.52 -6.60 4.72 -235.24 -1.11 -7.71 16 18 C 0.02 0.28 8.99 60.06 0.54 0.82 16 19 C 0.05 0.56 2.85 -66.81 -0.19 0.37 16 20 C -0.12 -1.14 5.76 -25.92 -0.15 -1.29 16 21 C -0.09 -0.76 1.39 -153.69 -0.21 -0.97 16 22 C -0.13 -1.02 9.18 37.16 0.34 -0.68 16 23 C -0.13 -0.91 9.07 37.16 0.34 -0.58 16 24 C -0.12 -1.08 6.81 -25.83 -0.18 -1.25 16 25 C -0.07 -1.13 7.90 -39.61 -0.31 -1.45 16 26 C -0.19 -3.73 9.21 -39.38 -0.36 -4.09 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 29 H 0.06 0.91 6.20 -51.93 -0.32 0.58 16 30 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 31 H 0.03 0.62 5.63 -51.93 -0.29 0.33 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.11 1.78 6.14 -52.49 -0.32 1.46 16 34 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.07 0.86 7.86 -51.93 -0.41 0.45 16 36 H 0.03 0.39 8.06 -51.93 -0.42 -0.03 16 37 H 0.06 0.78 7.05 -51.93 -0.37 0.41 16 38 H 0.08 1.21 5.90 -51.93 -0.31 0.90 16 39 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 40 H 0.06 0.61 7.64 -51.93 -0.40 0.21 16 41 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 42 H 0.09 0.95 7.85 -51.93 -0.41 0.54 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.48 7.98 -51.93 -0.41 0.07 16 45 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.05 0.40 7.34 -51.93 -0.38 0.02 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.09 0.94 7.99 -51.93 -0.41 0.53 16 50 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 51 H 0.11 1.64 8.00 -52.49 -0.42 1.22 16 52 H 0.13 2.71 6.14 -52.48 -0.32 2.38 16 LS Contribution 400.46 15.07 6.03 6.03 Total: -1.00 -29.72 400.46 -10.75 -40.47 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -9.37 Total: 2.33 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -1.87 Total: -17.56 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: -0.88 Total: -47.33 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.67 Total: 16.06 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.72 -10.75 -40.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839183495.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.276 kcal (2) G-P(sol) polarization free energy of solvation -29.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds