Wall clock time and date at job start Tue Mar 31 2020 12:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 120.00095 * 2 1 4 4 C 1.50702 * 109.47185 * 269.99701 * 3 2 1 5 5 H 1.08006 * 119.99716 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00088 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99769 * 180.02562 * 6 4 3 8 8 Si 1.86795 * 120.00027 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47299 * 90.00338 * 8 6 4 10 10 H 1.48503 * 109.47031 * 210.00288 * 8 6 4 11 11 H 1.48500 * 109.47335 * 329.99878 * 8 6 4 12 12 C 1.39671 * 120.00033 * 179.97438 * 2 1 3 13 13 C 1.38913 * 120.07747 * 0.02562 * 12 2 1 14 14 C 1.38103 * 119.92665 * 179.97438 * 13 12 2 15 15 C 1.38281 * 120.07233 * 359.97438 * 14 13 12 16 16 C 1.50707 * 119.92244 * 180.02562 * 15 14 13 17 17 N 1.46897 * 109.47187 * 89.99661 * 16 15 14 18 18 C 1.46899 * 110.99599 * 66.04747 * 17 16 15 19 19 C 1.46894 * 111.00269 * 190.00093 * 17 16 15 20 20 C 1.53783 * 113.61701 * 180.02562 * 19 17 16 21 21 C 1.53785 * 87.07804 * 219.93397 * 20 19 17 22 22 C 1.53006 * 113.61096 * 139.97884 * 21 20 19 23 23 C 1.53002 * 113.61471 * 270.79457 * 21 20 19 24 24 C 1.53781 * 87.17620 * 25.38900 * 21 20 19 25 25 C 1.38285 * 120.15375 * 0.27543 * 15 14 13 26 26 C 1.38102 * 120.06994 * 359.45363 * 25 15 14 27 27 H 1.08993 * 109.47463 * 270.00116 * 1 2 3 28 28 H 1.08999 * 109.47017 * 30.00544 * 1 2 3 29 29 H 1.09000 * 109.46930 * 150.00229 * 1 2 3 30 30 H 1.09006 * 109.46977 * 29.99581 * 3 2 1 31 31 H 1.08998 * 109.47479 * 149.99945 * 3 2 1 32 32 H 0.97003 * 120.00098 * 180.02562 * 7 6 4 33 33 H 1.08000 * 120.02989 * 359.95225 * 13 12 2 34 34 H 1.08001 * 119.95838 * 179.97438 * 14 13 12 35 35 H 1.09004 * 109.47130 * 330.00225 * 16 15 14 36 36 H 1.08994 * 109.47249 * 210.00011 * 16 15 14 37 37 H 1.08996 * 109.47270 * 183.95197 * 18 17 16 38 38 H 1.08998 * 109.47472 * 303.95277 * 18 17 16 39 39 H 1.09007 * 109.47209 * 63.95555 * 18 17 16 40 40 H 1.09004 * 112.85111 * 311.20201 * 19 17 16 41 41 H 1.08997 * 113.61737 * 105.38463 * 20 19 17 42 42 H 1.09000 * 113.61138 * 334.47603 * 20 19 17 43 43 H 1.09001 * 109.47002 * 181.52532 * 22 21 20 44 44 H 1.08993 * 109.46955 * 301.52970 * 22 21 20 45 45 H 1.09000 * 109.47050 * 61.52798 * 22 21 20 46 46 H 1.08999 * 109.47105 * 298.47603 * 23 21 20 47 47 H 1.09000 * 109.46611 * 58.47476 * 23 21 20 48 48 H 1.08998 * 109.47047 * 178.47668 * 23 21 20 49 49 H 1.08998 * 113.61545 * 89.15547 * 24 21 20 50 50 H 1.08993 * 113.61303 * 220.06004 * 24 21 20 51 51 H 1.07995 * 119.95957 * 179.70412 * 25 15 14 52 52 H 1.08008 * 120.03124 * 180.27200 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.3449 3.2577 -2.9127 8 14 3.7330 3.9292 -0.2530 9 1 5.1065 3.5082 0.1229 10 1 3.7477 5.3559 -0.6645 11 1 2.8271 3.7593 0.9114 12 6 2.1634 -1.2096 0.0005 13 6 1.4704 -2.4135 0.0005 14 6 2.1641 -3.6077 0.0005 15 6 3.5469 -3.6058 0.0000 16 6 4.3005 -4.9110 -0.0006 17 7 4.5447 -5.3348 -1.3857 18 6 5.4551 -4.4053 -2.0678 19 6 5.0629 -6.7085 -1.4324 20 6 5.3409 -7.2140 -2.8579 21 6 4.7655 -8.5666 -2.4060 22 6 3.8868 -9.2420 -3.4609 23 6 5.8130 -9.5107 -1.8122 24 6 3.9678 -7.7873 -1.3471 25 6 4.2399 -2.4092 0.0052 26 6 3.5525 -1.2114 -0.0004 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1384 0.5138 32 1 3.8218 4.0836 -3.0900 33 1 0.3904 -2.4156 0.0009 34 1 1.6259 -4.5441 0.0010 35 1 3.7116 -5.6708 0.5133 36 1 5.2530 -4.7808 0.5129 37 1 5.5636 -4.7026 -3.1108 38 1 5.0475 -3.3956 -2.0184 39 1 6.4298 -4.4279 -1.5803 40 1 5.8904 -6.8725 -0.7421 41 1 6.4009 -7.2523 -3.1087 42 1 4.7418 -6.7180 -3.6216 43 1 3.4946 -10.1776 -3.0621 44 1 3.0590 -8.5823 -3.7207 45 1 4.4810 -9.4474 -4.3513 46 1 6.5662 -9.7382 -2.5666 47 1 6.2890 -9.0327 -0.9560 48 1 5.3300 -10.4335 -1.4912 49 1 2.9928 -7.4483 -1.6970 50 1 3.9210 -8.2878 -0.3799 51 1 5.3198 -2.4114 0.0096 52 1 4.0944 -0.2771 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839183495.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:19 Heat of formation + Delta-G solvation = 38.418239 kcal Electronic energy + Delta-G solvation = -26495.819508 eV Core-core repulsion = 23074.117484 eV Total energy + Delta-G solvation = -3421.702024 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.01351 -40.33480 -37.92569 -36.27610 -34.69060 -32.02447 -31.86463 -30.54485 -29.93907 -28.39655 -28.23139 -26.75199 -26.02030 -25.10868 -23.40322 -22.90912 -21.46936 -20.92887 -19.11348 -19.08612 -18.14325 -17.03328 -16.79926 -16.43700 -16.15398 -16.01437 -15.59564 -15.24214 -15.00205 -14.77705 -14.70794 -14.60834 -14.35154 -14.22393 -13.91146 -13.72737 -13.54400 -13.36246 -13.21297 -13.10176 -12.76995 -12.71165 -12.63029 -12.47629 -12.40722 -12.36953 -12.09191 -12.01869 -11.76334 -11.67416 -11.54265 -11.43111 -10.96748 -10.87917 -10.83151 -10.38802 -9.65865 -9.18271 -8.34165 -7.90356 -6.39421 0.69924 0.83220 1.33269 1.34028 1.44795 2.29573 2.54184 2.92882 2.99687 3.36829 3.58818 3.76233 3.85478 3.97356 4.03634 4.10373 4.23119 4.36256 4.40581 4.43591 4.45516 4.58273 4.62337 4.63754 4.69015 4.75739 4.79623 4.83061 4.83657 4.85463 4.90142 4.94637 4.99125 5.02017 5.05191 5.06902 5.08536 5.11663 5.22139 5.26755 5.28355 5.29926 5.44998 5.57123 5.59882 5.63603 5.68811 5.90472 6.09059 6.16276 6.21459 6.35349 6.59530 6.69603 6.87303 7.26035 8.83387 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020242 B = 0.002612 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.929363 B =10718.515378 C =11248.734000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.629 5.629 3 C 0.232 3.768 4 C -0.535 4.535 5 H 0.023 0.977 6 C 0.011 3.989 7 N -0.946 5.946 8 Si 0.946 3.054 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.243 1.243 12 C 0.211 3.789 13 C -0.216 4.216 14 C -0.050 4.050 15 C -0.152 4.152 16 C 0.115 3.885 17 N -0.534 5.534 18 C 0.026 3.974 19 C 0.052 3.948 20 C -0.121 4.121 21 C -0.085 4.085 22 C -0.132 4.132 23 C -0.126 4.126 24 C -0.112 4.112 25 C -0.067 4.067 26 C -0.216 4.216 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.036 0.964 31 H 0.029 0.971 32 H 0.268 0.732 33 H 0.132 0.868 34 H 0.139 0.861 35 H 0.090 0.910 36 H 0.037 0.963 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.027 0.973 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.050 0.950 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.055 0.945 48 H 0.065 0.935 49 H 0.080 0.920 50 H 0.071 0.929 51 H 0.119 0.881 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.378 -24.656 6.715 25.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.337 5.337 3 C 0.109 3.891 4 C -0.574 4.574 5 H 0.042 0.958 6 C -0.187 4.187 7 N -0.586 5.586 8 Si 0.769 3.231 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.166 1.166 12 C 0.107 3.893 13 C -0.239 4.239 14 C -0.069 4.069 15 C -0.155 4.155 16 C -0.012 4.012 17 N -0.258 5.258 18 C -0.122 4.122 19 C -0.056 4.056 20 C -0.159 4.159 21 C -0.086 4.086 22 C -0.190 4.190 23 C -0.183 4.183 24 C -0.150 4.150 25 C -0.087 4.087 26 C -0.239 4.239 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.150 0.850 34 H 0.157 0.843 35 H 0.108 0.892 36 H 0.055 0.945 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.045 0.955 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.084 0.916 49 H 0.099 0.901 50 H 0.090 0.910 51 H 0.137 0.863 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.881 -24.321 6.369 25.211 hybrid contribution 1.153 1.413 0.150 1.830 sum 3.034 -22.908 6.519 24.010 Atomic orbital electron populations 1.21628 0.79159 1.02457 1.01315 1.46689 1.05620 1.03288 1.78139 1.19331 0.92569 0.82445 0.94729 1.21657 1.36420 1.06641 0.92642 0.95814 1.25874 0.95523 0.98780 0.98482 1.70070 1.42744 1.24428 1.21396 0.85734 0.79840 0.77818 0.79722 1.19057 1.20511 1.16648 1.18188 0.91637 0.86471 0.93009 1.20813 1.00076 0.90782 1.12217 1.20850 0.93414 0.97098 0.95528 1.19491 0.93930 0.93985 1.08050 1.20790 0.97910 0.93563 0.88959 1.62239 1.46025 1.01893 1.15593 1.22315 0.93949 0.96827 0.99147 1.23218 0.97142 0.87263 0.97962 1.23109 1.00789 0.96124 0.95899 1.21684 0.96624 0.93849 0.96426 1.21687 0.98856 1.00424 0.97990 1.21592 0.97607 0.98606 1.00497 1.23100 0.97691 0.95078 0.99144 1.20802 0.99114 0.91417 0.97317 1.20758 0.93115 0.98579 1.11421 0.91959 0.92609 0.90869 0.94645 0.95350 0.92318 0.85015 0.84297 0.89179 0.94461 0.91317 0.92818 0.95453 0.91647 0.91487 0.90462 0.91908 0.93111 0.92432 0.92073 0.92579 0.91591 0.90140 0.90991 0.86289 0.88192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.30 10.19 127.77 1.30 4.61 16 2 N -0.63 -26.76 2.99 -726.56 -2.17 -28.93 16 3 C 0.23 11.13 3.98 85.63 0.34 11.47 16 4 C -0.53 -31.11 9.94 25.60 0.25 -30.85 16 5 H 0.02 1.58 8.06 -2.91 -0.02 1.56 16 6 C 0.01 0.66 5.47 84.65 0.46 1.12 16 7 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 8 Si 0.95 43.29 27.47 68.60 1.88 45.18 16 9 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 12 C 0.21 8.52 6.55 38.22 0.25 8.77 16 13 C -0.22 -7.22 9.21 22.40 0.21 -7.01 16 14 C -0.05 -1.45 9.69 22.25 0.22 -1.24 16 15 C -0.15 -4.45 4.89 -19.84 -0.10 -4.55 16 16 C 0.11 2.67 5.09 85.56 0.44 3.10 16 17 N -0.53 -12.47 4.72 -898.16 -4.24 -16.71 16 18 C 0.03 0.65 8.99 127.69 1.15 1.80 16 19 C 0.05 0.96 2.85 45.50 0.13 1.09 16 20 C -0.12 -2.09 5.76 31.12 0.18 -1.91 16 21 C -0.09 -1.21 1.39 -51.65 -0.07 -1.29 16 22 C -0.13 -1.77 9.18 71.98 0.66 -1.11 16 23 C -0.13 -1.45 9.07 71.98 0.65 -0.80 16 24 C -0.11 -1.81 6.81 31.18 0.21 -1.60 16 25 C -0.07 -2.28 7.90 22.25 0.18 -2.10 16 26 C -0.22 -8.84 9.21 22.40 0.21 -8.63 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 29 H 0.07 2.21 6.20 -2.39 -0.01 2.20 16 30 H 0.04 1.63 7.13 -2.38 -0.02 1.62 16 31 H 0.03 1.36 5.63 -2.39 -0.01 1.34 16 32 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 33 H 0.13 3.84 6.14 -2.91 -0.02 3.82 16 34 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 35 H 0.09 1.81 7.86 -2.38 -0.02 1.79 16 36 H 0.04 0.84 8.06 -2.39 -0.02 0.82 16 37 H 0.07 1.63 7.05 -2.39 -0.02 1.62 16 38 H 0.05 1.63 5.90 -2.39 -0.01 1.62 16 39 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16 40 H 0.07 1.16 7.64 -2.39 -0.02 1.14 16 41 H 0.07 1.08 8.10 -2.39 -0.02 1.06 16 42 H 0.08 1.54 7.85 -2.39 -0.02 1.53 16 43 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.05 0.76 7.98 -2.39 -0.02 0.74 16 45 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.06 0.65 7.34 -2.39 -0.02 0.63 16 48 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.08 1.49 7.99 -2.39 -0.02 1.48 16 50 H 0.07 1.02 8.10 -2.39 -0.02 1.00 16 51 H 0.12 3.63 8.00 -2.91 -0.02 3.61 16 52 H 0.10 4.53 6.14 -2.91 -0.02 4.51 16 Total: -1.00 -67.18 400.46 3.24 -63.94 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 0.81 Total: 24.82 kcal Atomic # 6 Polarization: -35.80 SS G_CDS: 6.66 Total: -29.14 kcal Atomic # 7 Polarization: -98.69 SS G_CDS: -6.11 Total: -104.80 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.88 Total: 45.18 kcal Total: -67.18 3.24 -63.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839183495.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.362 kcal (2) G-P(sol) polarization free energy of solvation -67.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds