Wall clock time and date at job start Tue Mar 31 2020 10:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00173 * 2 1 4 4 H 1.48501 * 109.47291 * 240.00144 * 3 2 1 5 5 H 1.48495 * 109.47025 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46713 * 120.00012 * 3 2 1 7 7 C 1.37876 * 119.99813 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00333 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00202 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47587 * 180.02562 * 9 7 2 11 11 C 1.37475 * 120.00439 * 179.97438 * 10 9 7 12 12 N 1.30347 * 120.00002 * 359.97438 * 11 10 9 13 13 N 1.37480 * 120.00451 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00263 * 180.02562 * 13 11 10 15 15 C 1.53122 * 109.52174 * 204.99727 * 14 13 11 16 16 C 1.53040 * 109.27933 * 182.37937 * 15 14 13 17 17 N 1.46846 * 109.52603 * 59.17712 * 16 15 14 18 18 C 1.46893 * 111.00130 * 174.16513 * 17 16 15 19 19 C 1.50696 * 109.47236 * 170.00273 * 18 17 16 20 20 C 1.38230 * 120.00309 * 89.99753 * 19 18 17 21 21 C 1.38235 * 120.00326 * 179.97438 * 20 19 18 22 22 C 1.38234 * 119.99814 * 359.97438 * 21 20 19 23 23 C 1.38240 * 120.00061 * 0.07178 * 22 21 20 24 24 C 1.38234 * 120.00081 * 359.88514 * 23 22 21 25 25 C 1.46852 * 111.19772 * 298.26117 * 17 16 15 26 26 C 1.53035 * 109.52355 * 61.73794 * 25 17 16 27 27 H 0.97004 * 119.99973 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47415 * 59.99858 * 9 7 2 29 29 H 1.09003 * 109.47077 * 300.00266 * 9 7 2 30 30 H 0.97004 * 119.99363 * 0.02562 * 10 9 7 31 31 H 0.97001 * 119.99652 * 0.02562 * 12 11 10 32 32 H 0.97000 * 119.99424 * 359.97438 * 13 11 10 33 33 H 1.08997 * 109.52238 * 325.12067 * 14 13 11 34 34 H 1.08997 * 109.50491 * 62.43335 * 15 14 13 35 35 H 1.09000 * 109.53687 * 302.33783 * 15 14 13 36 36 H 1.09003 * 109.46008 * 299.16111 * 16 15 14 37 37 H 1.08999 * 109.45452 * 179.19405 * 16 15 14 38 38 H 1.09003 * 109.47526 * 49.99792 * 18 17 16 39 39 H 1.09001 * 109.47224 * 289.99946 * 18 17 16 40 40 H 1.08000 * 120.00376 * 359.97438 * 20 19 18 41 41 H 1.08000 * 120.00616 * 179.72578 * 21 20 19 42 42 H 1.08001 * 120.00299 * 179.97438 * 22 21 20 43 43 H 1.08005 * 120.00107 * 179.97438 * 23 22 21 44 44 H 1.07999 * 120.00147 * 180.10835 * 24 23 22 45 45 H 1.09000 * 109.46010 * 181.75754 * 25 17 16 46 46 H 1.09005 * 109.45940 * 301.72671 * 25 17 16 47 47 H 1.09006 * 109.50538 * 180.87622 * 26 25 17 48 48 H 1.09007 * 109.50255 * 60.76211 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6962 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2029 -3.6128 -0.0005 11 6 1.7447 -4.9089 0.0000 12 7 0.4631 -5.1471 0.0010 13 7 2.6380 -5.9539 0.0005 14 6 2.1496 -7.3351 0.0005 15 6 3.2120 -8.2534 0.6110 16 6 2.7209 -9.7018 0.5541 17 7 2.4657 -10.0791 -0.8420 18 6 2.1256 -11.5041 -0.9485 19 6 1.6345 -11.8005 -2.3420 20 6 2.5301 -12.1783 -3.3247 21 6 2.0795 -12.4508 -4.6029 22 6 0.7332 -12.3459 -4.8981 23 6 -0.1625 -11.9671 -3.9156 24 6 0.2880 -11.6956 -2.6372 25 6 1.4152 -9.2415 -1.4348 26 6 1.8673 -7.7795 -1.4373 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6246 -2.5571 0.8897 30 1 3.1566 -3.4355 -0.0002 31 1 -0.1672 -4.4098 0.0010 32 1 3.5916 -5.7767 0.0002 33 1 1.2334 -7.3974 0.5876 34 1 3.3864 -7.9688 1.6486 35 1 4.1405 -8.1616 0.0475 36 1 1.8002 -9.7960 1.1298 37 1 3.4812 -10.3597 0.9750 38 1 1.3437 -11.7458 -0.2285 39 1 3.0103 -12.1055 -0.7395 40 1 3.5820 -12.2607 -3.0941 41 1 2.7798 -12.7417 -5.3719 42 1 0.3811 -12.5584 -5.8968 43 1 -1.2143 -11.8848 -4.1463 44 1 -0.4119 -11.4013 -1.8691 45 1 1.2272 -9.5653 -2.4585 46 1 0.5006 -9.3378 -0.8497 47 1 1.0810 -7.1561 -1.8632 48 1 2.7744 -7.6800 -2.0336 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849023310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:09 Heat of formation + Delta-G solvation = 53.659896 kcal Electronic energy + Delta-G solvation = -25655.972092 eV Core-core repulsion = 22131.390653 eV Total energy + Delta-G solvation = -3524.581439 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.09725 -38.82048 -37.37080 -34.99033 -33.14974 -32.07908 -31.22430 -30.76455 -30.44560 -29.63054 -26.99883 -25.86984 -23.35906 -23.22861 -22.68389 -22.15538 -21.06988 -19.84758 -19.35747 -17.57590 -16.99945 -16.53348 -15.73682 -15.60183 -15.53876 -15.41125 -14.72694 -14.61129 -14.29014 -14.12757 -13.84650 -13.61646 -13.51052 -13.19952 -12.97815 -12.87722 -12.50036 -12.34207 -12.10256 -11.94209 -11.55119 -11.34024 -11.23581 -11.17409 -11.05421 -10.93801 -10.87642 -10.37015 -10.31132 -10.21634 -9.43275 -9.12464 -9.03376 -8.67425 -8.49612 -8.40425 -7.87013 -7.04281 -6.19569 -4.25177 1.08246 1.18401 3.24340 3.28894 3.30329 3.43559 3.53355 3.94921 3.97665 4.30563 4.45272 4.60550 4.76056 4.79557 4.87588 4.96403 5.00871 5.07471 5.14782 5.17168 5.25154 5.26329 5.33714 5.44279 5.45079 5.57456 5.62162 5.71402 5.76324 5.80672 5.85095 5.99004 6.12277 6.22549 6.29034 6.34530 6.38184 6.42394 6.68020 6.75524 6.90613 6.98349 7.08634 7.43664 7.50876 7.58062 7.83804 7.96537 8.34059 8.71820 9.07574 9.40803 9.69728 10.90941 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.022847 B = 0.002139 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.256902 B =13084.852790 C =13663.831863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.537 4.537 8 H 0.061 0.939 9 C 0.263 3.737 10 N -0.763 5.763 11 C 0.628 3.372 12 N -0.851 5.851 13 N -0.733 5.733 14 C 0.179 3.821 15 C -0.125 4.125 16 C 0.062 3.938 17 N -0.532 5.532 18 C 0.093 3.907 19 C -0.082 4.082 20 C -0.100 4.100 21 C -0.122 4.122 22 C -0.121 4.121 23 C -0.121 4.121 24 C -0.112 4.112 25 C 0.056 3.944 26 C -0.124 4.124 27 H 0.266 0.734 28 H 0.017 0.983 29 H 0.017 0.983 30 H 0.379 0.621 31 H 0.340 0.660 32 H 0.394 0.606 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.037 0.963 37 H 0.076 0.924 38 H 0.042 0.958 39 H 0.082 0.918 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.080 0.920 46 H 0.034 0.966 47 H 0.077 0.923 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.537 -26.708 -4.373 27.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.576 4.576 8 H 0.080 0.920 9 C 0.141 3.859 10 N -0.405 5.405 11 C 0.260 3.740 12 N -0.502 5.502 13 N -0.375 5.375 14 C 0.073 3.927 15 C -0.164 4.164 16 C -0.066 4.066 17 N -0.257 5.257 18 C -0.034 4.034 19 C -0.082 4.082 20 C -0.118 4.118 21 C -0.141 4.141 22 C -0.140 4.140 23 C -0.139 4.139 24 C -0.131 4.131 25 C -0.072 4.072 26 C -0.163 4.163 27 H 0.076 0.924 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.211 0.789 31 H 0.157 0.843 32 H 0.228 0.772 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.055 0.945 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.101 0.899 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.098 0.902 46 H 0.052 0.948 47 H 0.095 0.905 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.980 -27.351 -4.603 28.179 hybrid contribution 0.498 2.086 0.357 2.174 sum 5.478 -25.266 -4.246 26.199 Atomic orbital electron populations 1.69944 1.06072 1.27449 1.49073 1.24947 0.94955 0.99463 0.94713 0.86454 0.79406 0.82233 0.78699 1.20074 1.21057 1.20090 1.21118 0.93263 0.90289 1.52916 0.92042 1.18898 0.88374 0.82268 0.96333 1.45993 1.09973 1.03491 1.81063 1.18860 0.88391 0.79271 0.87442 1.69464 0.98553 1.39316 1.42881 1.43770 1.06300 1.03062 1.84356 1.20605 0.97053 0.79360 0.95729 1.21888 0.99436 0.93713 1.01346 1.22007 1.00041 0.96341 0.88258 1.62119 1.43855 1.02101 1.17664 1.21068 0.99826 0.89863 0.92656 1.19756 0.93402 0.99353 0.95674 1.21023 0.99438 0.98647 0.92732 1.21160 0.95771 1.00414 0.96706 1.21166 0.93595 0.99963 0.99243 1.21139 0.99775 0.99716 0.93271 1.21121 0.95192 0.99748 0.97026 1.22204 0.91909 0.93150 0.99962 1.21988 1.02173 0.94179 0.97983 0.92396 0.96472 0.96502 0.78934 0.84277 0.77201 0.89577 0.91010 0.90880 0.94526 0.90576 0.93964 0.89922 0.85931 0.86153 0.86246 0.86080 0.86254 0.90207 0.94793 0.90466 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.54 -14.66 9.28 -34.44 -0.32 -14.98 16 8 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 9 C 0.26 6.83 4.77 -5.19 -0.02 6.80 16 10 N -0.76 -16.29 5.66 -62.97 -0.36 -16.64 16 11 C 0.63 12.46 8.69 -320.10 -2.78 9.68 16 12 N -0.85 -18.43 12.84 30.15 0.39 -18.04 16 13 N -0.73 -11.20 5.19 -55.17 -0.29 -11.48 16 14 C 0.18 2.42 2.52 -67.81 -0.17 2.25 16 15 C -0.13 -1.29 5.57 -26.65 -0.15 -1.44 16 16 C 0.06 0.57 5.42 -3.83 -0.02 0.55 16 17 N -0.53 -5.32 4.80 -236.11 -1.13 -6.45 16 18 C 0.09 0.79 5.43 -4.98 -0.03 0.76 16 19 C -0.08 -0.74 4.12 -104.63 -0.43 -1.17 16 20 C -0.10 -0.87 9.70 -39.59 -0.38 -1.25 16 21 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 22 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 23 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 24 C -0.11 -1.01 7.80 -39.58 -0.31 -1.32 16 25 C 0.06 0.64 4.58 -3.83 -0.02 0.63 16 26 C -0.12 -1.67 5.68 -26.65 -0.15 -1.82 16 27 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.02 0.49 7.97 -51.93 -0.41 0.08 16 29 H 0.02 0.48 7.97 -51.93 -0.41 0.07 16 30 H 0.38 7.34 8.42 -40.82 -0.34 6.99 16 31 H 0.34 7.99 7.14 -40.82 -0.29 7.70 16 32 H 0.39 5.13 8.70 -40.82 -0.36 4.77 16 33 H 0.09 1.38 7.53 -51.93 -0.39 0.99 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.59 8.12 -51.93 -0.42 0.17 16 38 H 0.04 0.35 8.02 -51.93 -0.42 -0.07 16 39 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 40 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 44 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.08 0.95 5.64 -51.93 -0.29 0.66 16 46 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 48 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 LS Contribution 384.46 15.07 5.79 5.79 Total: -1.00 -30.24 384.46 -13.90 -44.14 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: -7.95 Total: 15.74 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -6.08 Total: -3.88 kcal Atomic # 7 Polarization: -77.10 SS G_CDS: -0.65 Total: -77.75 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.24 -13.90 -44.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849023310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.798 kcal (2) G-P(sol) polarization free energy of solvation -30.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds