Wall clock time and date at job start Tue Mar 31 2020 10:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00173 * 2 1 4 4 H 1.48501 * 109.47291 * 240.00144 * 3 2 1 5 5 H 1.48495 * 109.47025 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46713 * 120.00012 * 3 2 1 7 7 C 1.37876 * 119.99813 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00333 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00202 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47587 * 180.02562 * 9 7 2 11 11 C 1.37475 * 120.00439 * 179.97438 * 10 9 7 12 12 N 1.30347 * 120.00002 * 359.97438 * 11 10 9 13 13 N 1.37480 * 120.00451 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00263 * 180.02562 * 13 11 10 15 15 C 1.53122 * 109.52174 * 204.99727 * 14 13 11 16 16 C 1.53040 * 109.27933 * 182.37937 * 15 14 13 17 17 N 1.46846 * 109.52603 * 59.17712 * 16 15 14 18 18 C 1.46893 * 111.00130 * 174.16513 * 17 16 15 19 19 C 1.50696 * 109.47236 * 170.00273 * 18 17 16 20 20 C 1.38230 * 120.00309 * 89.99753 * 19 18 17 21 21 C 1.38235 * 120.00326 * 179.97438 * 20 19 18 22 22 C 1.38234 * 119.99814 * 359.97438 * 21 20 19 23 23 C 1.38240 * 120.00061 * 0.07178 * 22 21 20 24 24 C 1.38234 * 120.00081 * 359.88514 * 23 22 21 25 25 C 1.46852 * 111.19772 * 298.26117 * 17 16 15 26 26 C 1.53035 * 109.52355 * 61.73794 * 25 17 16 27 27 H 0.97004 * 119.99973 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47415 * 59.99858 * 9 7 2 29 29 H 1.09003 * 109.47077 * 300.00266 * 9 7 2 30 30 H 0.97004 * 119.99363 * 0.02562 * 10 9 7 31 31 H 0.97001 * 119.99652 * 0.02562 * 12 11 10 32 32 H 0.97000 * 119.99424 * 359.97438 * 13 11 10 33 33 H 1.08997 * 109.52238 * 325.12067 * 14 13 11 34 34 H 1.08997 * 109.50491 * 62.43335 * 15 14 13 35 35 H 1.09000 * 109.53687 * 302.33783 * 15 14 13 36 36 H 1.09003 * 109.46008 * 299.16111 * 16 15 14 37 37 H 1.08999 * 109.45452 * 179.19405 * 16 15 14 38 38 H 1.09003 * 109.47526 * 49.99792 * 18 17 16 39 39 H 1.09001 * 109.47224 * 289.99946 * 18 17 16 40 40 H 1.08000 * 120.00376 * 359.97438 * 20 19 18 41 41 H 1.08000 * 120.00616 * 179.72578 * 21 20 19 42 42 H 1.08001 * 120.00299 * 179.97438 * 22 21 20 43 43 H 1.08005 * 120.00107 * 179.97438 * 23 22 21 44 44 H 1.07999 * 120.00147 * 180.10835 * 24 23 22 45 45 H 1.09000 * 109.46010 * 181.75754 * 25 17 16 46 46 H 1.09005 * 109.45940 * 301.72671 * 25 17 16 47 47 H 1.09006 * 109.50538 * 180.87622 * 26 25 17 48 48 H 1.09007 * 109.50255 * 60.76211 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6962 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2029 -3.6128 -0.0005 11 6 1.7447 -4.9089 0.0000 12 7 0.4631 -5.1471 0.0010 13 7 2.6380 -5.9539 0.0005 14 6 2.1496 -7.3351 0.0005 15 6 3.2120 -8.2534 0.6110 16 6 2.7209 -9.7018 0.5541 17 7 2.4657 -10.0791 -0.8420 18 6 2.1256 -11.5041 -0.9485 19 6 1.6345 -11.8005 -2.3420 20 6 2.5301 -12.1783 -3.3247 21 6 2.0795 -12.4508 -4.6029 22 6 0.7332 -12.3459 -4.8981 23 6 -0.1625 -11.9671 -3.9156 24 6 0.2880 -11.6956 -2.6372 25 6 1.4152 -9.2415 -1.4348 26 6 1.8673 -7.7795 -1.4373 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6246 -2.5571 0.8897 30 1 3.1566 -3.4355 -0.0002 31 1 -0.1672 -4.4098 0.0010 32 1 3.5916 -5.7767 0.0002 33 1 1.2334 -7.3974 0.5876 34 1 3.3864 -7.9688 1.6486 35 1 4.1405 -8.1616 0.0475 36 1 1.8002 -9.7960 1.1298 37 1 3.4812 -10.3597 0.9750 38 1 1.3437 -11.7458 -0.2285 39 1 3.0103 -12.1055 -0.7395 40 1 3.5820 -12.2607 -3.0941 41 1 2.7798 -12.7417 -5.3719 42 1 0.3811 -12.5584 -5.8968 43 1 -1.2143 -11.8848 -4.1463 44 1 -0.4119 -11.4013 -1.8691 45 1 1.2272 -9.5653 -2.4585 46 1 0.5006 -9.3378 -0.8497 47 1 1.0810 -7.1561 -1.8632 48 1 2.7744 -7.6800 -2.0336 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849023310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:08 Heat of formation + Delta-G solvation = 36.400649 kcal Electronic energy + Delta-G solvation = -25656.720509 eV Core-core repulsion = 22131.390653 eV Total energy + Delta-G solvation = -3525.329856 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.88239 -39.82963 -38.72640 -36.32977 -34.90614 -33.31338 -31.97925 -31.96240 -31.61039 -30.78328 -28.86957 -26.82629 -24.83699 -24.22983 -23.53087 -23.31352 -21.78792 -21.09716 -20.72185 -19.41228 -17.92527 -17.62438 -17.32196 -16.82598 -16.42335 -16.33915 -16.18633 -15.58215 -15.45205 -15.33453 -14.98960 -14.91568 -14.66714 -14.23458 -14.19418 -13.96266 -13.66330 -13.35040 -13.30361 -13.00921 -12.90584 -12.85120 -12.61974 -12.24884 -12.20297 -12.11831 -11.86040 -11.78919 -11.53149 -11.45619 -11.34563 -10.73829 -10.23008 -9.76711 -9.70682 -9.40326 -9.19159 -8.81017 -8.31230 -6.46060 0.44102 0.54559 1.41164 1.44621 1.52776 2.04496 2.31553 2.37856 2.76253 3.03964 3.19939 3.38967 3.76428 3.87696 3.98709 4.03328 4.17045 4.19298 4.28827 4.32833 4.44171 4.47794 4.54031 4.64128 4.68112 4.72824 4.76908 4.85934 4.91435 4.95443 5.03252 5.06745 5.14964 5.16731 5.21079 5.23419 5.27720 5.43775 5.49112 5.59912 5.66720 5.73020 5.81597 5.87007 6.09204 6.11909 6.19387 6.43745 6.56480 6.64327 7.22737 7.43047 7.97947 8.80394 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.022847 B = 0.002139 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.256902 B =13084.852790 C =13663.831863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.982 3.018 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.555 4.555 8 H 0.075 0.925 9 C 0.284 3.716 10 N -0.759 5.759 11 C 0.627 3.373 12 N -0.866 5.866 13 N -0.715 5.715 14 C 0.179 3.821 15 C -0.114 4.114 16 C 0.062 3.938 17 N -0.533 5.533 18 C 0.095 3.905 19 C -0.092 4.092 20 C -0.109 4.109 21 C -0.129 4.129 22 C -0.130 4.130 23 C -0.133 4.133 24 C -0.126 4.126 25 C 0.068 3.932 26 C -0.116 4.116 27 H 0.269 0.731 28 H -0.014 1.014 29 H -0.013 1.013 30 H 0.392 0.608 31 H 0.325 0.675 32 H 0.409 0.591 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.033 0.967 37 H 0.102 0.898 38 H 0.045 0.955 39 H 0.100 0.900 40 H 0.134 0.866 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.132 0.868 44 H 0.118 0.882 45 H 0.076 0.924 46 H 0.025 0.975 47 H 0.043 0.957 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.168 -27.565 -4.379 29.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.194 4.194 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.593 4.593 8 H 0.094 0.906 9 C 0.160 3.840 10 N -0.402 5.402 11 C 0.260 3.740 12 N -0.517 5.517 13 N -0.358 5.358 14 C 0.073 3.927 15 C -0.153 4.153 16 C -0.066 4.066 17 N -0.258 5.258 18 C -0.032 4.032 19 C -0.093 4.093 20 C -0.127 4.127 21 C -0.147 4.147 22 C -0.148 4.148 23 C -0.151 4.151 24 C -0.145 4.145 25 C -0.061 4.061 26 C -0.155 4.155 27 H 0.078 0.922 28 H 0.003 0.997 29 H 0.004 0.996 30 H 0.225 0.775 31 H 0.140 0.860 32 H 0.246 0.754 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.051 0.949 37 H 0.121 0.879 38 H 0.063 0.937 39 H 0.118 0.882 40 H 0.152 0.848 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.149 0.851 44 H 0.136 0.864 45 H 0.094 0.906 46 H 0.043 0.957 47 H 0.062 0.938 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.672 -28.270 -4.606 29.652 hybrid contribution -0.354 2.255 0.326 2.306 sum 7.318 -26.014 -4.281 27.361 Atomic orbital electron populations 1.70091 1.07963 1.28603 1.49881 1.25986 0.95833 1.03619 0.93926 0.85254 0.77990 0.76951 0.79315 1.18952 1.20869 1.18894 1.21504 0.94076 0.90822 1.52905 0.90647 1.18361 0.88444 0.83801 0.93410 1.45665 1.09905 1.03180 1.81485 1.19114 0.88576 0.79728 0.86607 1.69522 0.99290 1.38408 1.44522 1.43824 1.06415 1.02639 1.82969 1.20715 0.97463 0.78850 0.95671 1.21823 0.98376 0.93397 1.01680 1.22075 1.00684 0.95988 0.87854 1.62123 1.42862 1.02746 1.18080 1.21120 1.00700 0.88861 0.92493 1.19881 0.93471 0.99748 0.96166 1.21245 1.00020 0.98556 0.92899 1.21457 0.96192 0.99967 0.97107 1.21454 0.93740 0.99577 0.99991 1.21378 1.00632 0.99778 0.93339 1.21246 0.95533 1.00303 0.97403 1.21990 0.92066 0.92128 0.99884 1.21854 1.00996 0.95075 0.97615 0.92215 0.99658 0.99569 0.77456 0.86010 0.75448 0.92150 0.90018 0.89756 0.94905 0.87940 0.93692 0.88185 0.84766 0.84316 0.84540 0.85056 0.86368 0.90602 0.95691 0.93816 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.08 13.29 21.45 0.28 -54.80 16 2 C 0.01 0.35 5.46 84.65 0.46 0.81 16 3 Si 0.98 42.59 29.54 68.60 2.03 44.62 16 4 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.56 -30.41 9.28 25.60 0.24 -30.17 16 8 H 0.08 3.83 7.60 -2.91 -0.02 3.81 16 9 C 0.28 15.22 4.77 85.63 0.41 15.62 16 10 N -0.76 -32.72 5.66 -353.15 -2.00 -34.72 16 11 C 0.63 25.27 8.69 260.54 2.26 27.53 16 12 N -0.87 -39.14 12.84 -58.54 -0.75 -39.89 16 13 N -0.72 -21.37 5.19 -328.46 -1.71 -23.08 16 14 C 0.18 4.75 2.52 45.07 0.11 4.86 16 15 C -0.11 -2.10 5.57 30.65 0.17 -1.93 16 16 C 0.06 1.00 5.42 86.33 0.47 1.47 16 17 N -0.53 -9.70 4.80 -900.93 -4.32 -14.02 16 18 C 0.09 1.44 5.43 85.56 0.46 1.91 16 19 C -0.09 -1.57 4.12 -19.87 -0.08 -1.66 16 20 C -0.11 -1.72 9.70 22.27 0.22 -1.50 16 21 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 22 C -0.13 -1.97 10.05 22.27 0.22 -1.74 16 23 C -0.13 -2.22 10.05 22.27 0.22 -2.00 16 24 C -0.13 -2.25 7.80 22.27 0.17 -2.08 16 25 C 0.07 1.55 4.58 86.32 0.40 1.94 16 26 C -0.12 -3.13 5.68 30.65 0.17 -2.96 16 27 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 28 H -0.01 -0.86 7.97 -2.39 -0.02 -0.87 16 29 H -0.01 -0.80 7.97 -2.39 -0.02 -0.82 16 30 H 0.39 14.86 8.42 -92.71 -0.78 14.08 16 31 H 0.33 16.19 7.14 -92.71 -0.66 15.53 16 32 H 0.41 9.87 8.70 -92.71 -0.81 9.07 16 33 H 0.06 1.96 7.53 -2.39 -0.02 1.94 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.10 1.19 8.12 -2.39 -0.02 1.18 16 38 H 0.04 0.67 8.02 -2.39 -0.02 0.65 16 39 H 0.10 1.19 8.09 -2.39 -0.02 1.17 16 40 H 0.13 1.72 8.06 -2.91 -0.02 1.70 16 41 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 42 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 43 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 44 H 0.12 2.03 8.06 -2.91 -0.02 2.00 16 45 H 0.08 1.81 5.64 -2.39 -0.01 1.79 16 46 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16 47 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 48 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -66.60 384.46 -1.61 -68.21 By element: Atomic # 1 Polarization: 46.54 SS G_CDS: -1.28 Total: 45.26 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 6.14 Total: 8.42 kcal Atomic # 7 Polarization: -158.01 SS G_CDS: -8.50 Total: -166.51 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -66.60 -1.61 -68.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849023310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.610 kcal (2) G-P(sol) polarization free energy of solvation -66.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds