Wall clock time and date at job start Tue Mar 31 2020 12:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38308 * 119.92719 * 2 1 4 4 C 1.38077 * 120.07485 * 180.02562 * 3 2 1 5 5 C 1.38931 * 119.92722 * 0.02562 * 4 3 2 6 6 N 1.39672 * 120.07314 * 179.97438 * 5 4 3 7 7 C 1.46956 * 111.00374 * 359.97438 * 6 5 4 8 8 C 1.53047 * 109.36685 * 183.18758 * 7 6 5 9 9 N 1.46954 * 109.36867 * 301.60016 * 8 7 6 10 10 C 1.46894 * 111.00675 * 183.18765 * 9 8 7 11 11 C 1.52998 * 109.47001 * 75.77242 * 10 9 8 12 12 H 1.08993 * 109.47354 * 305.24069 * 11 10 9 13 13 C 1.52997 * 109.46787 * 65.24689 * 11 10 9 14 14 C 1.53005 * 109.47202 * 185.24178 * 11 10 9 15 15 C 1.50697 * 109.47385 * 175.00316 * 14 11 10 16 16 H 1.08003 * 119.99531 * 0.02562 * 15 14 11 17 17 C 1.37871 * 119.99985 * 180.02562 * 15 14 11 18 18 N 1.31512 * 120.00318 * 359.72171 * 17 15 14 19 19 Si 1.86811 * 119.99838 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47018 * 179.72094 * 19 17 15 21 21 H 1.48490 * 109.47131 * 299.72387 * 19 17 15 22 22 H 1.48502 * 109.46771 * 59.72388 * 19 17 15 23 23 C 1.46964 * 110.87781 * 59.31867 * 9 8 7 24 24 C 1.46954 * 111.00269 * 123.80033 * 6 5 4 25 25 C 1.38886 * 119.84776 * 0.25385 * 5 4 3 26 26 C 1.38119 * 119.92774 * 359.47267 * 25 5 4 27 27 C 1.50697 * 119.96672 * 180.27506 * 26 25 5 28 28 H 1.09002 * 109.46965 * 89.99963 * 1 2 3 29 29 H 1.08996 * 109.47175 * 209.99184 * 1 2 3 30 30 H 1.08997 * 109.46848 * 330.00176 * 1 2 3 31 31 H 1.08002 * 119.95823 * 0.02854 * 3 2 1 32 32 H 1.08007 * 120.03682 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.48766 * 63.22036 * 7 6 5 34 34 H 1.09005 * 109.50800 * 303.17212 * 7 6 5 35 35 H 1.09003 * 109.49100 * 181.63467 * 8 7 6 36 36 H 1.08998 * 109.50831 * 61.57903 * 8 7 6 37 37 H 1.09013 * 109.46935 * 315.77724 * 10 9 8 38 38 H 1.09001 * 109.47496 * 195.77856 * 10 9 8 39 39 H 1.09002 * 109.47521 * 65.00976 * 13 11 10 40 40 H 1.09002 * 109.46932 * 185.00654 * 13 11 10 41 41 H 1.09004 * 109.47019 * 305.00159 * 13 11 10 42 42 H 1.08997 * 109.46944 * 55.00048 * 14 11 10 43 43 H 1.09003 * 109.46867 * 295.00390 * 14 11 10 44 44 H 0.97000 * 119.99778 * 0.28166 * 18 17 15 45 45 H 1.09001 * 109.48977 * 60.65087 * 23 9 8 46 46 H 1.08996 * 109.48650 * 180.71600 * 23 9 8 47 47 H 1.08997 * 109.49370 * 296.78040 * 24 6 5 48 48 H 1.09005 * 109.48940 * 56.84000 * 24 6 5 49 49 H 1.08000 * 120.03502 * 179.72438 * 25 5 4 50 50 H 1.09000 * 109.47116 * 270.25457 * 27 26 25 51 51 H 1.09003 * 109.47144 * 30.25431 * 27 26 25 52 52 H 1.09006 * 109.47528 * 150.24897 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5778 1.2022 -0.0005 5 6 4.2740 -0.0001 -0.0016 6 7 5.6707 0.0000 -0.0027 7 6 6.1974 1.3719 -0.0031 8 6 7.7251 1.3291 -0.0846 9 7 8.2527 0.5659 1.0550 10 6 9.7217 0.5658 1.0540 11 6 10.2320 1.9249 1.5368 12 1 9.7937 2.7151 0.9274 13 6 9.8336 2.1287 2.9999 14 6 11.7563 1.9710 1.4122 15 6 12.2483 3.3494 1.7710 16 1 11.5442 4.1159 2.0595 17 6 13.5971 3.6321 1.7310 18 7 14.4549 2.6972 1.3850 19 14 14.2069 5.3411 2.1751 20 1 15.6868 5.3840 2.0602 21 1 13.6094 6.3360 1.2488 22 1 13.8092 5.6617 3.5695 23 6 7.7261 -0.8062 1.0554 24 6 6.1984 -0.7637 1.1366 25 6 3.5780 -1.2019 -0.0075 26 6 2.1968 -1.1983 -0.0012 27 6 1.4407 -2.5019 -0.0013 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5138 31 1 1.6552 2.1329 0.0005 32 1 4.1160 2.1386 -0.0001 33 1 5.8963 1.8773 0.9145 34 1 5.8024 1.9132 -0.8628 35 1 8.1195 2.3448 -0.0558 36 1 8.0267 0.8482 -1.0151 37 1 10.0843 0.3799 0.0429 38 1 10.0855 -0.2166 1.7200 39 1 10.3431 1.3922 3.6213 40 1 10.1187 3.1317 3.3177 41 1 8.7552 2.0077 3.1030 42 1 12.0442 1.7378 0.3872 43 1 12.1984 1.2398 2.0891 44 1 14.1383 1.8099 1.1540 45 1 8.0272 -1.3116 0.1378 46 1 8.1211 -1.3470 1.9153 47 1 5.8972 -0.2831 2.0674 48 1 5.8040 -1.7795 1.1074 49 1 4.1161 -2.1382 -0.0128 50 1 1.2577 -2.8157 -1.0290 51 1 2.0286 -3.2630 0.5118 52 1 0.4889 -2.3700 0.5133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876563889.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:16 Heat of formation + Delta-G solvation = 15.633145 kcal Electronic energy + Delta-G solvation = -26414.530414 eV Core-core repulsion = 22991.840355 eV Total energy + Delta-G solvation = -3422.690059 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.63736 -38.85827 -36.66550 -34.55347 -32.84705 -32.31955 -31.50092 -31.07621 -28.22628 -27.34953 -26.39844 -25.57374 -24.18579 -23.98427 -22.42767 -21.85163 -20.80336 -19.53213 -19.08166 -17.43918 -16.67625 -16.18402 -15.57028 -15.21337 -14.98158 -14.73444 -14.63086 -14.49843 -14.17706 -13.87314 -13.68466 -13.47614 -13.42323 -13.15498 -13.07763 -12.78117 -12.31578 -12.20689 -12.02917 -11.90297 -11.67446 -11.50980 -11.44103 -11.31369 -11.20636 -11.02925 -10.90865 -10.81470 -10.61644 -10.24996 -10.08205 -9.71568 -9.67196 -9.39866 -8.91372 -8.46811 -8.28018 -8.12216 -7.88099 -6.30622 -3.98540 1.16297 1.20936 3.37227 3.46063 3.48081 3.66591 3.70473 4.00821 4.52915 4.58586 4.60414 4.71089 4.80408 4.86056 4.94764 5.00356 5.11248 5.19967 5.20236 5.22656 5.30630 5.38226 5.39807 5.45487 5.46544 5.54404 5.54998 5.59425 5.63985 5.74399 5.79570 5.81506 5.89879 5.92018 6.02262 6.06588 6.12675 6.19495 6.28356 6.43528 6.46515 6.61363 6.61705 6.83136 6.89301 7.04804 7.10986 7.14951 7.25274 7.31389 7.44755 7.61964 8.29126 8.52321 8.94558 9.72776 11.09722 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.031801 B = 0.002177 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.273837 B =12859.957579 C =13384.090508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.120 4.120 3 C -0.090 4.090 4 C -0.172 4.172 5 C 0.117 3.883 6 N -0.492 5.492 7 C 0.056 3.944 8 C 0.055 3.945 9 N -0.535 5.535 10 C 0.061 3.939 11 C -0.071 4.071 12 H 0.056 0.944 13 C -0.121 4.121 14 C 0.014 3.986 15 C -0.592 4.592 16 H 0.049 0.951 17 C 0.011 3.989 18 N -0.916 5.916 19 Si 1.067 2.933 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.288 1.288 23 C 0.054 3.946 24 C 0.064 3.936 25 C -0.139 4.139 26 C -0.064 4.064 27 C -0.117 4.117 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.120 0.880 32 H 0.127 0.873 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.040 0.960 37 H 0.031 0.969 38 H 0.067 0.933 39 H 0.037 0.963 40 H 0.052 0.948 41 H 0.044 0.956 42 H 0.002 0.998 43 H 0.006 0.994 44 H 0.267 0.733 45 H 0.040 0.960 46 H 0.082 0.918 47 H 0.052 0.948 48 H 0.081 0.919 49 H 0.122 0.878 50 H 0.070 0.930 51 H 0.064 0.936 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.705 -8.908 -2.788 29.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.121 4.121 3 C -0.108 4.108 4 C -0.193 4.193 5 C 0.019 3.981 6 N -0.207 5.207 7 C -0.071 4.071 8 C -0.073 4.073 9 N -0.260 5.260 10 C -0.067 4.067 11 C -0.090 4.090 12 H 0.074 0.926 13 C -0.178 4.178 14 C -0.024 4.024 15 C -0.630 4.630 16 H 0.067 0.933 17 C -0.192 4.192 18 N -0.553 5.553 19 Si 0.896 3.104 20 H -0.209 1.209 21 H -0.215 1.215 22 H -0.215 1.215 23 C -0.074 4.074 24 C -0.061 4.061 25 C -0.159 4.159 26 C -0.065 4.065 27 C -0.173 4.173 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.145 0.855 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.021 0.979 43 H 0.024 0.976 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.100 0.900 47 H 0.070 0.930 48 H 0.100 0.900 49 H 0.140 0.860 50 H 0.089 0.911 51 H 0.083 0.917 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -26.229 -7.996 -2.616 27.545 hybrid contribution -1.204 -0.934 -0.399 1.575 sum -27.433 -8.930 -3.015 29.007 Atomic orbital electron populations 1.20787 0.91537 1.02520 1.02004 1.19647 0.95817 0.92612 1.03996 1.20851 0.93676 0.97354 0.98957 1.21316 0.94652 0.97460 1.05897 1.18954 0.88195 0.93613 0.97364 1.59232 1.04462 1.15541 1.41437 1.22363 0.95224 0.87850 1.01698 1.22207 0.92983 0.99938 0.92214 1.62190 1.09166 1.12451 1.42207 1.22326 0.84714 1.00191 0.99422 1.21032 0.97938 0.93544 0.96440 0.92573 1.21557 0.99057 1.01232 0.95961 1.19266 0.89837 0.97638 0.95648 1.22016 0.94528 0.96827 1.49658 0.93264 1.25824 0.93537 1.05012 0.94796 1.70781 1.37115 1.04354 1.43001 0.83570 0.76138 0.74439 0.76287 1.20876 1.21538 1.21497 1.22187 0.93341 0.90725 1.01190 1.22287 0.95025 0.97999 0.90801 1.20602 0.93206 0.96787 1.05354 1.19573 0.93131 0.94840 0.98926 1.20856 1.00033 0.94080 1.02339 0.91557 0.91437 0.91921 0.86195 0.85507 0.92650 0.89849 0.89302 0.94173 0.95051 0.91447 0.94336 0.92905 0.93743 0.97928 0.97569 0.92219 0.94206 0.89981 0.92969 0.90030 0.85960 0.91147 0.91660 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 9.60 36.01 0.35 -0.38 16 2 C -0.12 -1.10 5.88 -104.58 -0.62 -1.71 16 3 C -0.09 -0.87 9.69 -39.61 -0.38 -1.25 16 4 C -0.17 -1.86 8.82 -39.38 -0.35 -2.21 16 5 C 0.12 1.34 5.63 -83.79 -0.47 0.87 16 6 N -0.49 -5.88 4.75 -170.96 -0.81 -6.69 16 7 C 0.06 0.67 4.30 -3.77 -0.02 0.65 16 8 C 0.05 0.76 5.43 -3.77 -0.02 0.74 16 9 N -0.54 -7.89 4.02 -234.47 -0.94 -8.83 16 10 C 0.06 1.04 4.39 -3.83 -0.02 1.03 16 11 C -0.07 -1.45 2.39 -90.62 -0.22 -1.67 16 12 H 0.06 1.19 6.73 -51.93 -0.35 0.84 16 13 C -0.12 -2.38 8.87 37.16 0.33 -2.05 16 14 C 0.01 0.35 3.76 -27.88 -0.10 0.24 16 15 C -0.59 -16.83 8.47 -34.44 -0.29 -17.12 16 16 H 0.05 1.38 7.06 -52.48 -0.37 1.01 16 17 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 18 N -0.92 -28.38 13.65 55.43 0.76 -27.62 16 19 Si 1.07 25.62 29.90 -169.99 -5.08 20.54 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.05 0.68 5.56 -3.77 -0.02 0.66 16 24 C 0.06 0.73 5.38 -3.77 -0.02 0.71 16 25 C -0.14 -1.46 8.85 -39.39 -0.35 -1.80 16 26 C -0.06 -0.60 5.88 -104.66 -0.62 -1.21 16 27 C -0.12 -0.78 9.60 36.00 0.35 -0.43 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.37 5.94 -51.93 -0.31 0.07 16 30 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 32 H 0.13 1.27 5.81 -52.48 -0.31 0.96 16 33 H 0.06 0.68 7.58 -51.93 -0.39 0.29 16 34 H 0.08 0.91 7.17 -51.93 -0.37 0.54 16 35 H 0.09 1.29 6.71 -51.93 -0.35 0.94 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.03 0.56 8.00 -51.92 -0.42 0.14 16 38 H 0.07 1.15 7.84 -51.93 -0.41 0.74 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.05 1.11 7.10 -51.93 -0.37 0.74 16 41 H 0.04 0.79 7.63 -51.93 -0.40 0.39 16 42 H 0.00 0.07 8.01 -51.93 -0.42 -0.35 16 43 H 0.01 0.16 8.00 -51.93 -0.42 -0.25 16 44 H 0.27 8.26 7.22 -40.82 -0.29 7.97 16 45 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.96 8.00 -51.93 -0.42 0.55 16 47 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.08 0.80 6.84 -51.93 -0.35 0.44 16 49 H 0.12 1.17 7.20 -52.49 -0.38 0.79 16 50 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 51 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 52 H 0.07 0.39 5.94 -51.93 -0.31 0.08 16 LS Contribution 393.47 15.07 5.93 5.93 Total: -1.00 -31.23 393.47 -11.93 -43.16 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -9.21 Total: -1.77 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: -2.57 Total: -24.71 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: -1.00 Total: -43.15 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.08 Total: 20.54 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.23 -11.93 -43.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876563889.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.797 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds