Wall clock time and date at job start Tue Mar 31 2020 12:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38308 * 119.92719 * 2 1 4 4 C 1.38077 * 120.07485 * 180.02562 * 3 2 1 5 5 C 1.38931 * 119.92722 * 0.02562 * 4 3 2 6 6 N 1.39672 * 120.07314 * 179.97438 * 5 4 3 7 7 C 1.46956 * 111.00374 * 359.97438 * 6 5 4 8 8 C 1.53047 * 109.36685 * 183.18758 * 7 6 5 9 9 N 1.46954 * 109.36867 * 301.60016 * 8 7 6 10 10 C 1.46894 * 111.00675 * 183.18765 * 9 8 7 11 11 C 1.52998 * 109.47001 * 75.77242 * 10 9 8 12 12 H 1.08993 * 109.47354 * 305.24069 * 11 10 9 13 13 C 1.52997 * 109.46787 * 65.24689 * 11 10 9 14 14 C 1.53005 * 109.47202 * 185.24178 * 11 10 9 15 15 C 1.50697 * 109.47385 * 175.00316 * 14 11 10 16 16 H 1.08003 * 119.99531 * 0.02562 * 15 14 11 17 17 C 1.37871 * 119.99985 * 180.02562 * 15 14 11 18 18 N 1.31512 * 120.00318 * 359.72171 * 17 15 14 19 19 Si 1.86811 * 119.99838 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47018 * 179.72094 * 19 17 15 21 21 H 1.48490 * 109.47131 * 299.72387 * 19 17 15 22 22 H 1.48502 * 109.46771 * 59.72388 * 19 17 15 23 23 C 1.46964 * 110.87781 * 59.31867 * 9 8 7 24 24 C 1.46954 * 111.00269 * 123.80033 * 6 5 4 25 25 C 1.38886 * 119.84776 * 0.25385 * 5 4 3 26 26 C 1.38119 * 119.92774 * 359.47267 * 25 5 4 27 27 C 1.50697 * 119.96672 * 180.27506 * 26 25 5 28 28 H 1.09002 * 109.46965 * 89.99963 * 1 2 3 29 29 H 1.08996 * 109.47175 * 209.99184 * 1 2 3 30 30 H 1.08997 * 109.46848 * 330.00176 * 1 2 3 31 31 H 1.08002 * 119.95823 * 0.02854 * 3 2 1 32 32 H 1.08007 * 120.03682 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.48766 * 63.22036 * 7 6 5 34 34 H 1.09005 * 109.50800 * 303.17212 * 7 6 5 35 35 H 1.09003 * 109.49100 * 181.63467 * 8 7 6 36 36 H 1.08998 * 109.50831 * 61.57903 * 8 7 6 37 37 H 1.09013 * 109.46935 * 315.77724 * 10 9 8 38 38 H 1.09001 * 109.47496 * 195.77856 * 10 9 8 39 39 H 1.09002 * 109.47521 * 65.00976 * 13 11 10 40 40 H 1.09002 * 109.46932 * 185.00654 * 13 11 10 41 41 H 1.09004 * 109.47019 * 305.00159 * 13 11 10 42 42 H 1.08997 * 109.46944 * 55.00048 * 14 11 10 43 43 H 1.09003 * 109.46867 * 295.00390 * 14 11 10 44 44 H 0.97000 * 119.99778 * 0.28166 * 18 17 15 45 45 H 1.09001 * 109.48977 * 60.65087 * 23 9 8 46 46 H 1.08996 * 109.48650 * 180.71600 * 23 9 8 47 47 H 1.08997 * 109.49370 * 296.78040 * 24 6 5 48 48 H 1.09005 * 109.48940 * 56.84000 * 24 6 5 49 49 H 1.08000 * 120.03502 * 179.72438 * 25 5 4 50 50 H 1.09000 * 109.47116 * 270.25457 * 27 26 25 51 51 H 1.09003 * 109.47144 * 30.25431 * 27 26 25 52 52 H 1.09006 * 109.47528 * 150.24897 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5778 1.2022 -0.0005 5 6 4.2740 -0.0001 -0.0016 6 7 5.6707 0.0000 -0.0027 7 6 6.1974 1.3719 -0.0031 8 6 7.7251 1.3291 -0.0846 9 7 8.2527 0.5659 1.0550 10 6 9.7217 0.5658 1.0540 11 6 10.2320 1.9249 1.5368 12 1 9.7937 2.7151 0.9274 13 6 9.8336 2.1287 2.9999 14 6 11.7563 1.9710 1.4122 15 6 12.2483 3.3494 1.7710 16 1 11.5442 4.1159 2.0595 17 6 13.5971 3.6321 1.7310 18 7 14.4549 2.6972 1.3850 19 14 14.2069 5.3411 2.1751 20 1 15.6868 5.3840 2.0602 21 1 13.6094 6.3360 1.2488 22 1 13.8092 5.6617 3.5695 23 6 7.7261 -0.8062 1.0554 24 6 6.1984 -0.7637 1.1366 25 6 3.5780 -1.2019 -0.0075 26 6 2.1968 -1.1983 -0.0012 27 6 1.4407 -2.5019 -0.0013 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5138 31 1 1.6552 2.1329 0.0005 32 1 4.1160 2.1386 -0.0001 33 1 5.8963 1.8773 0.9145 34 1 5.8024 1.9132 -0.8628 35 1 8.1195 2.3448 -0.0558 36 1 8.0267 0.8482 -1.0151 37 1 10.0843 0.3799 0.0429 38 1 10.0855 -0.2166 1.7200 39 1 10.3431 1.3922 3.6213 40 1 10.1187 3.1317 3.3177 41 1 8.7552 2.0077 3.1030 42 1 12.0442 1.7378 0.3872 43 1 12.1984 1.2398 2.0891 44 1 14.1383 1.8099 1.1540 45 1 8.0272 -1.3116 0.1378 46 1 8.1211 -1.3470 1.9153 47 1 5.8972 -0.2831 2.0674 48 1 5.8040 -1.7795 1.1074 49 1 4.1161 -2.1382 -0.0128 50 1 1.2577 -2.8157 -1.0290 51 1 2.0286 -3.2630 0.5118 52 1 0.4889 -2.3700 0.5133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876563889.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:15 Heat of formation + Delta-G solvation = -0.829256 kcal Electronic energy + Delta-G solvation = -26415.244277 eV Core-core repulsion = 22991.840355 eV Total energy + Delta-G solvation = -3423.403923 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.49113 -39.83095 -37.94286 -36.11216 -34.24859 -33.41199 -32.49953 -32.03378 -29.28331 -28.38546 -28.05140 -26.63008 -25.56790 -24.91693 -24.18551 -22.62899 -21.73279 -20.82587 -20.36709 -18.92453 -18.20468 -16.96869 -16.48237 -16.33899 -16.08608 -16.01532 -15.71121 -15.61818 -15.34280 -15.12677 -14.97062 -14.67297 -14.56601 -14.15418 -13.72193 -13.60771 -13.56108 -13.41116 -13.34019 -13.00414 -12.81144 -12.73329 -12.63284 -12.49277 -12.38506 -12.27820 -12.20504 -11.96244 -11.91705 -11.83090 -11.66164 -11.39317 -11.28522 -10.58672 -10.52048 -10.47745 -9.63393 -9.36197 -8.68530 -8.65197 -6.34112 0.42031 0.47064 1.51973 1.60609 1.79505 2.56119 2.57742 2.82003 2.90047 3.18593 3.71709 3.79677 3.89010 3.98501 4.01439 4.11639 4.14906 4.18677 4.26789 4.34079 4.35726 4.40636 4.43579 4.45972 4.55166 4.66442 4.72712 4.73488 4.75360 4.79034 4.80470 4.84947 4.88694 4.91660 4.96624 5.00024 5.03161 5.07064 5.19775 5.25974 5.31484 5.35366 5.36514 5.46928 5.50388 5.62773 5.77987 5.86530 5.95055 5.97832 6.07240 6.11110 6.22778 6.35745 6.62566 7.46523 8.75303 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.031801 B = 0.002177 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.273837 B =12859.957579 C =13384.090508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.125 4.125 3 C -0.099 4.099 4 C -0.186 4.186 5 C 0.097 3.903 6 N -0.498 5.498 7 C 0.065 3.935 8 C 0.056 3.944 9 N -0.537 5.537 10 C 0.074 3.926 11 C -0.062 4.062 12 H 0.050 0.950 13 C -0.110 4.110 14 C 0.017 3.983 15 C -0.603 4.603 16 H 0.051 0.949 17 C -0.044 4.044 18 N -0.941 5.941 19 Si 1.116 2.884 20 H -0.285 1.285 21 H -0.269 1.269 22 H -0.269 1.269 23 C 0.055 3.945 24 C 0.071 3.929 25 C -0.149 4.149 26 C -0.071 4.071 27 C -0.115 4.115 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.136 0.864 32 H 0.128 0.872 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.033 0.967 37 H 0.022 0.978 38 H 0.071 0.929 39 H 0.034 0.966 40 H 0.035 0.965 41 H 0.067 0.933 42 H -0.019 1.019 43 H -0.013 1.013 44 H 0.253 0.747 45 H 0.037 0.963 46 H 0.092 0.908 47 H 0.045 0.955 48 H 0.099 0.901 49 H 0.128 0.872 50 H 0.077 0.923 51 H 0.070 0.930 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.290 -8.855 -2.376 31.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.126 4.126 3 C -0.117 4.117 4 C -0.207 4.207 5 C 0.000 4.000 6 N -0.214 5.214 7 C -0.062 4.062 8 C -0.072 4.072 9 N -0.262 5.262 10 C -0.054 4.054 11 C -0.081 4.081 12 H 0.069 0.931 13 C -0.167 4.167 14 C -0.021 4.021 15 C -0.641 4.641 16 H 0.069 0.931 17 C -0.241 4.241 18 N -0.579 5.579 19 Si 0.937 3.063 20 H -0.211 1.211 21 H -0.195 1.195 22 H -0.194 1.194 23 C -0.073 4.073 24 C -0.055 4.055 25 C -0.169 4.169 26 C -0.072 4.072 27 C -0.172 4.172 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.154 0.846 32 H 0.146 0.854 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.051 0.949 37 H 0.040 0.960 38 H 0.089 0.911 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.086 0.914 42 H -0.001 1.001 43 H 0.006 0.994 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.111 0.889 47 H 0.064 0.936 48 H 0.117 0.883 49 H 0.146 0.854 50 H 0.096 0.904 51 H 0.089 0.911 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -28.858 -7.961 -2.207 30.017 hybrid contribution -0.492 -0.999 -0.556 1.244 sum -29.350 -8.960 -2.763 30.811 Atomic orbital electron populations 1.20838 0.89597 1.03512 1.02786 1.20033 0.97362 0.92365 1.02851 1.21123 0.93431 0.98474 0.98674 1.21450 0.95376 0.97390 1.06449 1.19079 0.87851 0.94368 0.98748 1.59272 1.05133 1.15229 1.41742 1.22242 0.93593 0.88383 1.01971 1.22192 0.94358 0.99084 0.91565 1.62134 1.07226 1.14118 1.42680 1.22026 0.86627 0.98029 0.98730 1.20851 0.94378 0.95508 0.97360 0.93132 1.21441 1.00394 1.00010 0.94850 1.19198 0.93367 0.95928 0.93603 1.22410 0.94808 0.97989 1.48861 0.93054 1.27406 0.94359 1.08208 0.94125 1.70919 1.37604 1.04314 1.45095 0.82955 0.75600 0.70322 0.77429 1.21066 1.19465 1.19429 1.22255 0.94261 0.89250 1.01528 1.22249 0.93875 0.98916 0.90426 1.20772 0.93911 0.96660 1.05560 1.19928 0.92976 0.96183 0.98122 1.20904 1.00369 0.92812 1.03069 0.90763 0.90280 0.91166 0.84600 0.85371 0.92971 0.88913 0.90330 0.94857 0.96017 0.91092 0.94650 0.94598 0.91448 1.00115 0.99433 0.93714 0.94464 0.88948 0.93644 0.88253 0.85437 0.90416 0.91115 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.60 71.24 0.68 -0.47 16 2 C -0.13 -2.05 5.88 -19.84 -0.12 -2.16 16 3 C -0.10 -1.75 9.69 22.25 0.22 -1.54 16 4 C -0.19 -3.83 8.82 22.40 0.20 -3.64 16 5 C 0.10 2.13 5.63 38.21 0.22 2.34 16 6 N -0.50 -11.45 4.75 -694.81 -3.30 -14.75 16 7 C 0.07 1.52 4.30 86.31 0.37 1.89 16 8 C 0.06 1.55 5.43 86.31 0.47 2.02 16 9 N -0.54 -15.48 4.02 -895.73 -3.60 -19.09 16 10 C 0.07 2.55 4.39 86.30 0.38 2.93 16 11 C -0.06 -2.58 2.39 -10.79 -0.03 -2.60 16 12 H 0.05 2.15 6.73 -2.39 -0.02 2.14 16 13 C -0.11 -4.27 8.87 71.98 0.64 -3.63 16 14 C 0.02 0.87 3.76 29.85 0.11 0.99 16 15 C -0.60 -34.75 8.47 25.60 0.22 -34.54 16 16 H 0.05 2.88 7.06 -2.91 -0.02 2.86 16 17 C -0.04 -2.62 5.46 84.65 0.46 -2.16 16 18 N -0.94 -59.61 13.65 21.44 0.29 -59.32 16 19 Si 1.12 51.23 29.90 68.60 2.05 53.29 16 20 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 22 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 23 C 0.06 1.32 5.56 86.31 0.48 1.80 16 24 C 0.07 1.51 5.38 86.31 0.46 1.97 16 25 C -0.15 -2.91 8.85 22.40 0.20 -2.71 16 26 C -0.07 -1.20 5.88 -19.89 -0.12 -1.32 16 27 C -0.12 -1.25 9.60 71.23 0.68 -0.57 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.08 0.64 5.94 -2.39 -0.01 0.62 16 30 H 0.07 0.63 8.08 -2.39 -0.02 0.61 16 31 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 32 H 0.13 2.48 5.81 -2.91 -0.02 2.46 16 33 H 0.05 1.25 7.58 -2.39 -0.02 1.23 16 34 H 0.09 1.97 7.17 -2.38 -0.02 1.95 16 35 H 0.08 2.30 6.71 -2.39 -0.02 2.28 16 36 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.02 0.79 8.00 -2.38 -0.02 0.77 16 38 H 0.07 2.40 7.84 -2.39 -0.02 2.38 16 39 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.03 1.49 7.10 -2.39 -0.02 1.47 16 41 H 0.07 2.30 7.63 -2.38 -0.02 2.28 16 42 H -0.02 -1.10 8.01 -2.39 -0.02 -1.12 16 43 H -0.01 -0.71 8.00 -2.39 -0.02 -0.73 16 44 H 0.25 16.27 7.22 -92.71 -0.67 15.60 16 45 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.09 2.02 8.00 -2.39 -0.02 2.00 16 47 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.10 1.76 6.84 -2.38 -0.02 1.75 16 49 H 0.13 2.25 7.20 -2.91 -0.02 2.23 16 50 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 52 H 0.08 0.68 5.94 -2.38 -0.01 0.67 16 Total: -1.00 -67.53 393.47 1.94 -65.60 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.97 Total: 15.67 kcal Atomic # 6 Polarization: -46.91 SS G_CDS: 5.53 Total: -41.39 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -6.61 Total: -93.16 kcal Atomic # 14 Polarization: 51.23 SS G_CDS: 2.05 Total: 53.29 kcal Total: -67.53 1.94 -65.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876563889.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.767 kcal (2) G-P(sol) polarization free energy of solvation -67.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds