Wall clock time and date at job start Tue Mar 31 2020 11:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.34127 * 125.98976 * 2 1 4 4 C 1.30493 * 109.25508 * 180.11803 * 3 2 1 5 5 C 1.50707 * 125.65209 * 179.89306 * 4 3 2 6 6 C 1.53116 * 109.52169 * 94.68731 * 5 4 3 7 7 C 1.53038 * 109.28049 * 177.55948 * 6 5 4 8 8 N 1.46847 * 109.52543 * 300.82548 * 7 6 5 9 9 C 1.46892 * 111.00431 * 185.83497 * 8 7 6 10 10 C 1.52997 * 109.47486 * 169.99876 * 9 8 7 11 11 H 1.09002 * 109.47153 * 54.99924 * 10 9 8 12 12 C 1.47203 * 109.46901 * 295.00233 * 10 9 8 13 13 N 8.92195 * 170.27685 * 95.10290 * 2 1 3 14 14 C 1.53000 * 109.47060 * 175.00243 * 10 9 8 15 15 C 1.50703 * 109.46801 * 184.99876 * 14 10 9 16 16 H 1.07998 * 120.00413 * 0.02562 * 15 14 10 17 17 C 1.37878 * 119.99680 * 179.97438 * 15 14 10 18 18 N 1.31523 * 119.99583 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00273 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47042 * 89.99722 * 19 17 15 21 21 H 1.48506 * 109.47062 * 209.99913 * 19 17 15 22 22 H 1.48495 * 109.46994 * 329.99733 * 19 17 15 23 23 C 1.46850 * 111.19619 * 61.73393 * 8 7 6 24 24 C 1.53038 * 109.52816 * 298.26031 * 23 8 7 25 25 N 1.35044 * 108.69980 * 359.62444 * 4 3 2 26 26 H 0.97000 * 126.39752 * 180.20646 * 25 4 3 27 27 C 1.34667 * 125.98509 * 179.69808 * 2 1 3 28 28 C 1.50698 * 126.59470 * 0.07026 * 27 2 1 29 29 H 1.09004 * 109.46902 * 270.29837 * 1 2 3 30 30 H 1.09001 * 109.46821 * 30.29709 * 1 2 3 31 31 H 1.09000 * 109.46994 * 150.30237 * 1 2 3 32 32 H 1.08997 * 109.57054 * 334.53068 * 5 4 3 33 33 H 1.09004 * 109.50263 * 57.62180 * 6 5 4 34 34 H 1.08997 * 109.54092 * 297.52644 * 6 5 4 35 35 H 1.08996 * 109.46641 * 180.80371 * 7 6 5 36 36 H 1.09007 * 109.45906 * 60.83557 * 7 6 5 37 37 H 1.09000 * 109.46781 * 49.99612 * 9 8 7 38 38 H 1.09008 * 109.47124 * 289.99971 * 9 8 7 39 39 H 1.09002 * 109.47069 * 304.99600 * 14 10 9 40 40 H 1.08991 * 109.47625 * 64.99919 * 14 10 9 41 41 H 0.97001 * 119.99531 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.46273 * 58.27882 * 23 8 7 43 43 H 1.09001 * 109.45931 * 178.24679 * 23 8 7 44 44 H 1.09005 * 109.49924 * 299.24265 * 24 23 8 45 45 H 1.08994 * 109.50361 * 179.11781 * 24 23 8 46 46 H 1.09000 * 109.47045 * 269.98053 * 28 27 2 47 47 H 1.09004 * 109.46872 * 29.98431 * 28 27 2 48 48 H 1.09004 * 109.46982 * 149.97861 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2953 1.0853 0.0000 4 6 3.5449 0.7095 -0.0025 5 6 4.7387 1.6293 -0.0057 6 6 5.2192 1.8490 1.4314 7 6 6.4676 2.7341 1.4172 8 7 7.5197 2.0859 0.6239 9 6 8.7779 2.8400 0.7019 10 6 9.9060 2.0158 0.0782 11 1 9.6308 1.7336 -0.9380 12 6 10.1288 0.8024 0.8812 13 7 10.3009 -0.1340 1.5008 14 6 11.1888 2.8491 0.0464 15 6 12.2667 2.0842 -0.6776 16 1 12.0577 1.1023 -1.0757 17 6 13.5196 2.6385 -0.8328 18 7 14.4602 1.9712 -1.4652 19 14 13.8812 4.3372 -0.1449 20 1 14.3817 4.2112 1.2475 21 1 14.9114 5.0017 -0.9831 22 1 12.6379 5.1492 -0.1524 23 6 7.0987 1.9074 -0.7716 24 6 5.8692 0.9976 -0.8226 25 7 3.5912 -0.6401 0.0041 26 1 4.3913 -1.1886 0.0069 27 6 2.2983 -1.0897 0.0057 28 6 1.8472 -2.5275 0.0118 29 1 -0.3633 0.0054 1.0277 30 1 -0.3633 0.8873 -0.5185 31 1 -0.3633 -0.8927 -0.5091 32 1 4.4611 2.5864 -0.4473 33 1 5.4598 0.8878 1.8856 34 1 4.4335 2.3373 2.0079 35 1 6.8206 2.8807 2.4379 36 1 6.2228 3.7001 0.9754 37 1 9.0134 3.0468 1.7459 38 1 8.6723 3.7800 0.1601 39 1 10.9990 3.7887 -0.4725 40 1 11.5130 3.0562 1.0662 41 1 15.3415 2.3614 -1.5746 42 1 6.8510 2.8772 -1.2031 43 1 7.9102 1.4535 -1.3404 44 1 6.1202 0.0230 -0.4038 45 1 5.5477 0.8780 -1.8571 46 1 1.7377 -2.8696 1.0410 47 1 0.8896 -2.6100 -0.5024 48 1 2.5879 -3.1429 -0.4988 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886669599.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:14 Heat of formation + Delta-G solvation = 59.777830 kcal Electronic energy + Delta-G solvation = -25952.924248 eV Core-core repulsion = 22428.608102 eV Total energy + Delta-G solvation = -3524.316146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.42091 -39.31168 -36.65186 -34.65367 -33.54677 -33.19550 -32.44733 -31.40129 -30.96947 -28.77436 -27.76942 -25.88374 -24.02338 -23.35560 -22.31642 -21.45481 -21.05408 -20.19945 -19.45345 -17.54227 -16.91961 -16.78167 -15.96839 -15.68889 -15.05024 -14.79600 -14.65293 -14.34940 -13.93876 -13.80125 -13.56934 -13.35204 -13.24807 -13.14421 -12.91305 -12.87176 -12.67602 -12.50051 -12.39412 -12.31765 -12.11356 -11.74212 -11.47011 -11.38371 -11.33606 -11.10279 -10.96107 -10.78023 -10.62859 -10.20738 -10.12132 -10.00399 -9.97435 -9.76758 -9.34901 -8.64178 -8.31874 -8.25637 -6.13225 -4.14027 1.79707 2.86003 2.88780 3.24954 3.32308 3.33070 3.64655 3.73801 3.85888 4.01545 4.35855 4.48345 4.64332 4.66933 4.76635 4.78618 4.85200 5.00666 5.06813 5.13519 5.15275 5.19461 5.21715 5.32268 5.38821 5.41802 5.46095 5.51086 5.55234 5.59736 5.69387 5.70056 5.76472 5.81729 5.87119 5.88797 5.91838 6.05328 6.13478 6.18223 6.28075 6.59217 6.91403 7.03471 7.04689 7.11778 7.18821 7.60945 7.93304 8.37687 8.51545 8.90051 9.46569 10.99804 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.028285 B = 0.002397 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.697920 B =11677.486344 C =12063.722680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.001 4.001 3 N -0.488 5.488 4 C 0.227 3.773 5 C -0.003 4.003 6 C -0.105 4.105 7 C 0.058 3.942 8 N -0.542 5.542 9 C 0.060 3.940 10 C 0.020 3.980 11 H 0.105 0.895 12 C 0.254 3.746 13 N -0.473 5.473 14 C -0.006 4.006 15 C -0.528 4.528 16 H 0.074 0.926 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.878 3.122 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.263 1.263 23 C 0.051 3.949 24 C -0.113 4.113 25 N -0.560 5.560 26 H 0.418 0.582 27 C -0.032 4.032 28 C -0.076 4.076 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.038 0.962 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.037 0.963 40 H 0.021 0.979 41 H 0.265 0.735 42 H 0.041 0.959 43 H 0.088 0.912 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.081 0.919 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.494 -1.372 2.070 26.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.130 4.130 3 N -0.207 5.207 4 C -0.038 4.038 5 C -0.023 4.023 6 C -0.144 4.144 7 C -0.070 4.070 8 N -0.267 5.267 9 C -0.068 4.068 10 C -0.002 4.002 11 H 0.123 0.877 12 C -0.063 4.063 13 N -0.149 5.149 14 C -0.045 4.045 15 C -0.565 4.565 16 H 0.092 0.908 17 C -0.132 4.132 18 N -0.535 5.535 19 Si 0.705 3.295 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.187 1.187 23 C -0.076 4.076 24 C -0.152 4.152 25 N -0.164 5.164 26 H 0.257 0.743 27 C -0.148 4.148 28 C -0.134 4.134 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.057 0.943 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.055 0.945 40 H 0.039 0.961 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.106 0.894 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.100 0.900 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -26.310 -2.423 3.141 26.608 hybrid contribution 0.981 0.837 -0.282 1.320 sum -25.330 -1.586 2.858 25.540 Atomic orbital electron populations 1.20013 0.87872 1.02418 1.01995 1.20505 0.96346 0.88025 1.08162 1.70127 0.99730 1.30429 1.20460 1.23063 0.94763 0.81487 1.04440 1.19737 0.88278 0.96664 0.97660 1.21619 0.96736 1.01128 0.94883 1.22051 0.91121 0.95193 0.98639 1.61945 1.03414 1.50473 1.10858 1.22248 0.87795 0.94801 1.01991 1.19009 0.96930 0.87656 0.96620 0.87693 1.28703 0.90868 0.93806 0.92961 1.80994 1.10839 1.12092 1.10997 1.19649 0.91232 0.95655 0.97921 1.21012 0.94730 1.04388 1.36415 0.90824 1.25001 0.96071 0.97542 0.94547 1.69910 1.03647 1.38037 1.41869 0.86812 0.78566 0.84830 0.79295 1.20242 1.21261 1.18736 1.22146 0.97213 0.98684 0.89606 1.21674 0.94004 0.99657 0.99841 1.43107 1.08136 1.08145 1.56973 0.74335 1.20992 0.83793 0.97302 1.12667 1.20210 1.01839 0.88680 1.02666 0.91605 0.91298 0.91535 0.88218 0.91260 0.90894 0.90326 0.94347 0.90095 0.92696 0.94509 0.96079 0.92555 0.94040 0.89354 0.91386 0.90942 0.91001 0.90028 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.22 36.01 0.37 -0.15 16 2 C 0.00 -0.01 7.09 -82.85 -0.59 -0.60 16 3 N -0.49 -6.33 11.25 -7.07 -0.08 -6.41 16 4 C 0.23 2.52 6.88 -155.42 -1.07 1.45 16 5 C 0.00 -0.03 2.73 -91.65 -0.25 -0.28 16 6 C -0.10 -1.01 5.36 -26.65 -0.14 -1.16 16 7 C 0.06 0.58 5.46 -3.83 -0.02 0.56 16 8 N -0.54 -6.39 4.36 -234.67 -1.02 -7.42 16 9 C 0.06 0.79 4.32 -3.83 -0.02 0.77 16 10 C 0.02 0.34 2.13 -93.41 -0.20 0.14 16 11 H 0.11 1.70 6.22 -51.93 -0.32 1.37 16 12 C 0.25 5.09 13.67 -20.76 -0.28 4.80 16 13 N -0.47 -10.46 18.54 42.15 0.78 -9.68 16 14 C -0.01 -0.12 3.49 -27.88 -0.10 -0.21 16 15 C -0.53 -13.97 9.15 -34.44 -0.32 -14.29 16 16 H 0.07 2.15 7.84 -52.49 -0.41 1.73 16 17 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 18 N -0.90 -26.80 13.96 55.43 0.77 -26.03 16 19 Si 0.88 20.41 27.47 -169.99 -4.67 15.74 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.26 -5.63 6.54 56.52 0.37 -5.26 16 23 C 0.05 0.54 5.30 -3.83 -0.02 0.52 16 24 C -0.11 -1.06 5.16 -26.65 -0.14 -1.19 16 25 N -0.56 -5.35 5.91 -6.54 -0.04 -5.39 16 26 H 0.42 3.20 8.08 -40.82 -0.33 2.87 16 27 C -0.03 -0.31 7.24 -81.60 -0.59 -0.90 16 28 C -0.08 -0.46 10.22 36.00 0.37 -0.09 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.39 7.17 -51.93 -0.37 0.02 16 32 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.77 8.01 -51.93 -0.42 0.36 16 36 H 0.04 0.36 8.14 -51.92 -0.42 -0.07 16 37 H 0.08 1.05 7.99 -51.93 -0.41 0.64 16 38 H 0.05 0.64 8.12 -51.92 -0.42 0.22 16 39 H 0.04 0.72 7.20 -51.93 -0.37 0.35 16 40 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 1.00 6.12 -51.93 -0.32 0.68 16 44 H 0.07 0.65 7.31 -51.93 -0.38 0.27 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.08 0.39 7.18 -51.93 -0.37 0.02 16 48 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 384.67 15.07 5.80 5.80 Total: -1.00 -33.27 384.67 -9.47 -42.74 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -7.92 Total: -0.58 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -3.09 Total: -8.78 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.41 Total: -54.92 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.67 Total: 15.74 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.27 -9.47 -42.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886669599.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.517 kcal (2) G-P(sol) polarization free energy of solvation -33.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds