Wall clock time and date at job start Tue Mar 31 2020 11:21:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50707 * 1
3 3 N 1.34127 * 125.98976 * 2 1
4 4 C 1.30493 * 109.25508 * 180.11803 * 3 2 1
5 5 C 1.50707 * 125.65209 * 179.89306 * 4 3 2
6 6 C 1.53116 * 109.52169 * 94.68731 * 5 4 3
7 7 C 1.53038 * 109.28049 * 177.55948 * 6 5 4
8 8 N 1.46847 * 109.52543 * 300.82548 * 7 6 5
9 9 C 1.46892 * 111.00431 * 185.83497 * 8 7 6
10 10 C 1.52997 * 109.47486 * 169.99876 * 9 8 7
11 11 H 1.09002 * 109.47153 * 54.99924 * 10 9 8
12 12 C 1.47203 * 109.46901 * 295.00233 * 10 9 8
13 13 N 8.92195 * 170.27685 * 95.10290 * 2 1 3
14 14 C 1.53000 * 109.47060 * 175.00243 * 10 9 8
15 15 C 1.50703 * 109.46801 * 184.99876 * 14 10 9
16 16 H 1.07998 * 120.00413 * 0.02562 * 15 14 10
17 17 C 1.37878 * 119.99680 * 179.97438 * 15 14 10
18 18 N 1.31523 * 119.99583 * 180.02562 * 17 15 14
19 19 Si 1.86801 * 120.00273 * 0.02562 * 17 15 14
20 20 H 1.48501 * 109.47042 * 89.99722 * 19 17 15
21 21 H 1.48506 * 109.47062 * 209.99913 * 19 17 15
22 22 H 1.48495 * 109.46994 * 329.99733 * 19 17 15
23 23 C 1.46850 * 111.19619 * 61.73393 * 8 7 6
24 24 C 1.53038 * 109.52816 * 298.26031 * 23 8 7
25 25 N 1.35044 * 108.69980 * 359.62444 * 4 3 2
26 26 H 0.97000 * 126.39752 * 180.20646 * 25 4 3
27 27 C 1.34667 * 125.98509 * 179.69808 * 2 1 3
28 28 C 1.50698 * 126.59470 * 0.07026 * 27 2 1
29 29 H 1.09004 * 109.46902 * 270.29837 * 1 2 3
30 30 H 1.09001 * 109.46821 * 30.29709 * 1 2 3
31 31 H 1.09000 * 109.46994 * 150.30237 * 1 2 3
32 32 H 1.08997 * 109.57054 * 334.53068 * 5 4 3
33 33 H 1.09004 * 109.50263 * 57.62180 * 6 5 4
34 34 H 1.08997 * 109.54092 * 297.52644 * 6 5 4
35 35 H 1.08996 * 109.46641 * 180.80371 * 7 6 5
36 36 H 1.09007 * 109.45906 * 60.83557 * 7 6 5
37 37 H 1.09000 * 109.46781 * 49.99612 * 9 8 7
38 38 H 1.09008 * 109.47124 * 289.99971 * 9 8 7
39 39 H 1.09002 * 109.47069 * 304.99600 * 14 10 9
40 40 H 1.08991 * 109.47625 * 64.99919 * 14 10 9
41 41 H 0.97001 * 119.99531 * 179.97438 * 18 17 15
42 42 H 1.08999 * 109.46273 * 58.27882 * 23 8 7
43 43 H 1.09001 * 109.45931 * 178.24679 * 23 8 7
44 44 H 1.09005 * 109.49924 * 299.24265 * 24 23 8
45 45 H 1.08994 * 109.50361 * 179.11781 * 24 23 8
46 46 H 1.09000 * 109.47045 * 269.98053 * 28 27 2
47 47 H 1.09004 * 109.46872 * 29.98431 * 28 27 2
48 48 H 1.09004 * 109.46982 * 149.97861 * 28 27 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2953 1.0853 0.0000
4 6 3.5449 0.7095 -0.0025
5 6 4.7387 1.6293 -0.0057
6 6 5.2192 1.8490 1.4314
7 6 6.4676 2.7341 1.4172
8 7 7.5197 2.0859 0.6239
9 6 8.7779 2.8400 0.7019
10 6 9.9060 2.0158 0.0782
11 1 9.6308 1.7336 -0.9380
12 6 10.1288 0.8024 0.8812
13 7 10.3009 -0.1340 1.5008
14 6 11.1888 2.8491 0.0464
15 6 12.2667 2.0842 -0.6776
16 1 12.0577 1.1023 -1.0757
17 6 13.5196 2.6385 -0.8328
18 7 14.4602 1.9712 -1.4652
19 14 13.8812 4.3372 -0.1449
20 1 14.3817 4.2112 1.2475
21 1 14.9114 5.0017 -0.9831
22 1 12.6379 5.1492 -0.1524
23 6 7.0987 1.9074 -0.7716
24 6 5.8692 0.9976 -0.8226
25 7 3.5912 -0.6401 0.0041
26 1 4.3913 -1.1886 0.0069
27 6 2.2983 -1.0897 0.0057
28 6 1.8472 -2.5275 0.0118
29 1 -0.3633 0.0054 1.0277
30 1 -0.3633 0.8873 -0.5185
31 1 -0.3633 -0.8927 -0.5091
32 1 4.4611 2.5864 -0.4473
33 1 5.4598 0.8878 1.8856
34 1 4.4335 2.3373 2.0079
35 1 6.8206 2.8807 2.4379
36 1 6.2228 3.7001 0.9754
37 1 9.0134 3.0468 1.7459
38 1 8.6723 3.7800 0.1601
39 1 10.9990 3.7887 -0.4725
40 1 11.5130 3.0562 1.0662
41 1 15.3415 2.3614 -1.5746
42 1 6.8510 2.8772 -1.2031
43 1 7.9102 1.4535 -1.3404
44 1 6.1202 0.0230 -0.4038
45 1 5.5477 0.8780 -1.8571
46 1 1.7377 -2.8696 1.0410
47 1 0.8896 -2.6100 -0.5024
48 1 2.5879 -3.1429 -0.4988
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000886669599.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:21:13
Heat of formation + Delta-G solvation = 38.874707 kcal
Electronic energy + Delta-G solvation = -25953.830675 eV
Core-core repulsion = 22428.608102 eV
Total energy + Delta-G solvation = -3525.222573 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 316.196 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-43.17522 -40.22275 -38.04619 -35.91837 -35.09088 -34.01130 -33.66425 -32.57354
-31.80700 -29.38536 -29.17733 -26.95899 -24.93755 -24.19338 -23.46104 -23.05293
-21.87492 -20.95671 -20.22095 -18.91178 -18.27285 -18.18761 -16.99624 -16.45359
-16.18654 -15.85202 -15.65290 -15.61270 -15.06831 -14.76734 -14.51857 -14.47031
-14.25527 -14.13693 -13.88208 -13.72773 -13.66909 -13.50962 -13.41431 -13.24778
-13.14691 -12.95443 -12.88244 -12.73280 -12.45652 -12.18420 -12.04246 -11.91481
-11.71665 -11.65497 -11.46201 -11.40159 -11.07902 -10.92298 -10.78252 -10.72552
-9.17417 -8.99271 -8.23750 -6.29121 1.05897 1.44513 1.45083 1.56159
2.06581 2.07530 2.15046 2.18826 2.41814 2.92393 3.13053 3.27181
3.34932 3.72898 3.85131 4.04469 4.09227 4.13990 4.22598 4.30415
4.34829 4.41321 4.47756 4.49673 4.52956 4.66526 4.71004 4.71899
4.78326 4.85852 4.89941 4.91377 4.99139 5.02720 5.05183 5.07989
5.10302 5.12706 5.21107 5.27139 5.35070 5.36721 5.46462 5.65070
5.88526 6.12931 6.23894 6.28362 6.49009 6.78525 6.93174 7.15612
7.35243 8.93043
Molecular weight = 316.20amu
Principal moments of inertia in cm(-1)
A = 0.028285 B = 0.002397 C = 0.002320
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 989.697920 B =11677.486344 C =12063.722680
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 C -0.033 4.033
3 N -0.522 5.522
4 C 0.214 3.786
5 C 0.005 3.995
6 C -0.097 4.097
7 C 0.061 3.939
8 N -0.556 5.556
9 C 0.070 3.930
10 C 0.025 3.975
11 H 0.114 0.886
12 C 0.265 3.735
13 N -0.517 5.517
14 C -0.004 4.004
15 C -0.528 4.528
16 H 0.028 0.972
17 C 0.001 3.999
18 N -0.955 5.955
19 Si 0.947 3.053
20 H -0.277 1.277
21 H -0.291 1.291
22 H -0.222 1.222
23 C 0.050 3.950
24 C -0.105 4.105
25 N -0.558 5.558
26 H 0.426 0.574
27 C -0.031 4.031
28 C -0.074 4.074
29 H 0.070 0.930
30 H 0.061 0.939
31 H 0.088 0.912
32 H 0.100 0.900
33 H 0.056 0.944
34 H 0.073 0.927
35 H 0.081 0.919
36 H 0.053 0.947
37 H 0.086 0.914
38 H 0.081 0.919
39 H 0.064 0.936
40 H 0.026 0.974
41 H 0.264 0.736
42 H 0.056 0.944
43 H 0.078 0.922
44 H 0.062 0.938
45 H 0.078 0.922
46 H 0.080 0.920
47 H 0.096 0.904
48 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -28.377 0.357 2.599 28.498
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C -0.161 4.161
3 N -0.243 5.243
4 C -0.050 4.050
5 C -0.015 4.015
6 C -0.136 4.136
7 C -0.066 4.066
8 N -0.282 5.282
9 C -0.059 4.059
10 C 0.003 3.997
11 H 0.132 0.868
12 C -0.052 4.052
13 N -0.195 5.195
14 C -0.043 4.043
15 C -0.566 4.566
16 H 0.047 0.953
17 C -0.195 4.195
18 N -0.595 5.595
19 Si 0.770 3.230
20 H -0.203 1.203
21 H -0.217 1.217
22 H -0.144 1.144
23 C -0.077 4.077
24 C -0.144 4.144
25 N -0.162 5.162
26 H 0.265 0.735
27 C -0.146 4.146
28 C -0.132 4.132
29 H 0.089 0.911
30 H 0.080 0.920
31 H 0.106 0.894
32 H 0.118 0.882
33 H 0.075 0.925
34 H 0.092 0.908
35 H 0.099 0.901
36 H 0.071 0.929
37 H 0.104 0.896
38 H 0.099 0.901
39 H 0.083 0.917
40 H 0.044 0.956
41 H 0.073 0.927
42 H 0.074 0.926
43 H 0.096 0.904
44 H 0.081 0.919
45 H 0.097 0.903
46 H 0.099 0.901
47 H 0.115 0.885
48 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -28.233 -0.697 3.675 28.479
hybrid contribution 1.527 0.163 -0.487 1.611
sum -26.706 -0.535 3.187 26.901
Atomic orbital electron populations
1.20071 0.86256 1.03142 1.02530 1.21065 0.97740 0.88147 1.09130
1.70084 1.00754 1.31841 1.21590 1.23248 0.94732 0.82232 1.04790
1.19677 0.87843 0.96413 0.97584 1.21525 0.96724 1.00495 0.94819
1.22054 0.90368 0.95586 0.98590 1.61866 1.03565 1.50959 1.11774
1.22117 0.86798 0.94740 1.02236 1.19111 0.96999 0.86418 0.97157
0.86849 1.29402 0.89624 0.93920 0.92211 1.80991 1.12212 1.13518
1.12744 1.19603 0.90914 0.96382 0.97394 1.21395 0.96444 1.03071
1.35737 0.95330 1.26054 0.95941 1.02442 0.95098 1.70095 1.04333
1.40590 1.44503 0.85709 0.79839 0.79559 0.77866 1.20319 1.21705
1.14386 1.22171 0.97129 0.99497 0.88946 1.21596 0.93508 0.99140
1.00149 1.43154 1.08657 1.07888 1.56521 0.73479 1.21547 0.83463
0.98614 1.11014 1.20333 1.02758 0.86536 1.03588 0.91094 0.92026
0.89369 0.88201 0.92480 0.90807 0.90053 0.92879 0.89597 0.90143
0.91742 0.95586 0.92728 0.92608 0.90356 0.91948 0.90296 0.90107
0.88523 0.90818
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.93 10.22 71.24 0.73 -0.21 16
2 C -0.03 -0.70 7.09 41.39 0.29 -0.41 16
3 N -0.52 -13.35 11.25 -176.28 -1.98 -15.33 16
4 C 0.21 4.61 6.88 138.13 0.95 5.56 16
5 C 0.01 0.09 2.73 -11.46 -0.03 0.06 16
6 C -0.10 -1.73 5.36 30.65 0.16 -1.57 16
7 C 0.06 1.07 5.46 86.33 0.47 1.54 16
8 N -0.56 -11.76 4.36 -896.36 -3.91 -15.67 16
9 C 0.07 1.60 4.32 86.30 0.37 1.97 16
10 C 0.02 0.80 2.13 -12.60 -0.03 0.77 16
11 H 0.11 3.49 6.22 -2.39 -0.01 3.48 16
12 C 0.26 10.49 13.67 89.44 1.22 11.71 16
13 N -0.52 -23.08 18.54 20.01 0.37 -22.71 16
14 C 0.00 -0.15 3.49 29.85 0.10 -0.05 16
15 C -0.53 -28.07 9.15 25.60 0.23 -27.83 16
16 H 0.03 1.72 7.84 -2.91 -0.02 1.70 16
17 C 0.00 0.07 5.47 84.65 0.46 0.53 16
18 N -0.95 -58.73 13.96 21.45 0.30 -58.43 16
19 Si 0.95 40.96 27.47 68.60 1.88 42.85 16
20 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16
21 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16
22 H -0.22 -8.06 6.54 99.48 0.65 -7.41 16
23 C 0.05 0.94 5.30 86.33 0.46 1.40 16
24 C -0.11 -1.82 5.16 30.65 0.16 -1.66 16
25 N -0.56 -10.19 5.91 -174.60 -1.03 -11.22 16
26 H 0.43 6.18 8.08 -92.71 -0.75 5.43 16
27 C -0.03 -0.55 7.24 40.95 0.30 -0.25 16
28 C -0.07 -0.75 10.22 71.24 0.73 -0.02 16
29 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16
30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16
31 H 0.09 0.87 7.17 -2.39 -0.02 0.86 16
32 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16
33 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16
34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16
35 H 0.08 1.38 8.01 -2.39 -0.02 1.37 16
36 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16
37 H 0.09 1.92 7.99 -2.39 -0.02 1.90 16
38 H 0.08 1.49 8.12 -2.38 -0.02 1.47 16
39 H 0.06 2.23 7.20 -2.39 -0.02 2.21 16
40 H 0.03 1.01 7.57 -2.39 -0.02 0.99 16
41 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16
42 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16
43 H 0.08 1.64 6.12 -2.39 -0.01 1.62 16
44 H 0.06 1.14 7.31 -2.38 -0.02 1.13 16
45 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16
46 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16
47 H 0.10 0.69 7.18 -2.39 -0.02 0.67 16
48 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16
Total: -1.00 -74.40 384.67 2.37 -72.03
By element:
Atomic # 1 Polarization: 16.79 SS G_CDS: 0.15 Total: 16.94 kcal
Atomic # 6 Polarization: -15.04 SS G_CDS: 6.59 Total: -8.46 kcal
Atomic # 7 Polarization: -117.11 SS G_CDS: -6.25 Total: -123.36 kcal
Atomic # 14 Polarization: 40.96 SS G_CDS: 1.88 Total: 42.85 kcal
Total: -74.40 2.37 -72.03 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000886669599.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 110.905 kcal
(2) G-P(sol) polarization free energy of solvation -74.404 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.500 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.030 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.875 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds