Wall clock time and date at job start Tue Mar 31 2020 11:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.34127 * 125.98976 * 2 1 4 4 C 1.30493 * 109.25508 * 180.11803 * 3 2 1 5 5 C 1.50707 * 125.65209 * 179.89306 * 4 3 2 6 6 C 1.53116 * 109.52169 * 94.68731 * 5 4 3 7 7 C 1.53038 * 109.28049 * 177.55948 * 6 5 4 8 8 N 1.46847 * 109.52543 * 300.82548 * 7 6 5 9 9 C 1.46892 * 111.00431 * 185.83497 * 8 7 6 10 10 C 1.52997 * 109.47486 * 169.99876 * 9 8 7 11 11 H 1.09002 * 109.47153 * 54.99924 * 10 9 8 12 12 C 1.47203 * 109.46901 * 295.00233 * 10 9 8 13 13 N 8.92195 * 170.27685 * 95.10290 * 2 1 3 14 14 C 1.53000 * 109.47060 * 175.00243 * 10 9 8 15 15 C 1.50703 * 109.46801 * 184.99876 * 14 10 9 16 16 H 1.07998 * 120.00413 * 0.02562 * 15 14 10 17 17 C 1.37878 * 119.99680 * 179.97438 * 15 14 10 18 18 N 1.31523 * 119.99583 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00273 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47042 * 89.99722 * 19 17 15 21 21 H 1.48506 * 109.47062 * 209.99913 * 19 17 15 22 22 H 1.48495 * 109.46994 * 329.99733 * 19 17 15 23 23 C 1.46850 * 111.19619 * 61.73393 * 8 7 6 24 24 C 1.53038 * 109.52816 * 298.26031 * 23 8 7 25 25 N 1.35044 * 108.69980 * 359.62444 * 4 3 2 26 26 H 0.97000 * 126.39752 * 180.20646 * 25 4 3 27 27 C 1.34667 * 125.98509 * 179.69808 * 2 1 3 28 28 C 1.50698 * 126.59470 * 0.07026 * 27 2 1 29 29 H 1.09004 * 109.46902 * 270.29837 * 1 2 3 30 30 H 1.09001 * 109.46821 * 30.29709 * 1 2 3 31 31 H 1.09000 * 109.46994 * 150.30237 * 1 2 3 32 32 H 1.08997 * 109.57054 * 334.53068 * 5 4 3 33 33 H 1.09004 * 109.50263 * 57.62180 * 6 5 4 34 34 H 1.08997 * 109.54092 * 297.52644 * 6 5 4 35 35 H 1.08996 * 109.46641 * 180.80371 * 7 6 5 36 36 H 1.09007 * 109.45906 * 60.83557 * 7 6 5 37 37 H 1.09000 * 109.46781 * 49.99612 * 9 8 7 38 38 H 1.09008 * 109.47124 * 289.99971 * 9 8 7 39 39 H 1.09002 * 109.47069 * 304.99600 * 14 10 9 40 40 H 1.08991 * 109.47625 * 64.99919 * 14 10 9 41 41 H 0.97001 * 119.99531 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.46273 * 58.27882 * 23 8 7 43 43 H 1.09001 * 109.45931 * 178.24679 * 23 8 7 44 44 H 1.09005 * 109.49924 * 299.24265 * 24 23 8 45 45 H 1.08994 * 109.50361 * 179.11781 * 24 23 8 46 46 H 1.09000 * 109.47045 * 269.98053 * 28 27 2 47 47 H 1.09004 * 109.46872 * 29.98431 * 28 27 2 48 48 H 1.09004 * 109.46982 * 149.97861 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2953 1.0853 0.0000 4 6 3.5449 0.7095 -0.0025 5 6 4.7387 1.6293 -0.0057 6 6 5.2192 1.8490 1.4314 7 6 6.4676 2.7341 1.4172 8 7 7.5197 2.0859 0.6239 9 6 8.7779 2.8400 0.7019 10 6 9.9060 2.0158 0.0782 11 1 9.6308 1.7336 -0.9380 12 6 10.1288 0.8024 0.8812 13 7 10.3009 -0.1340 1.5008 14 6 11.1888 2.8491 0.0464 15 6 12.2667 2.0842 -0.6776 16 1 12.0577 1.1023 -1.0757 17 6 13.5196 2.6385 -0.8328 18 7 14.4602 1.9712 -1.4652 19 14 13.8812 4.3372 -0.1449 20 1 14.3817 4.2112 1.2475 21 1 14.9114 5.0017 -0.9831 22 1 12.6379 5.1492 -0.1524 23 6 7.0987 1.9074 -0.7716 24 6 5.8692 0.9976 -0.8226 25 7 3.5912 -0.6401 0.0041 26 1 4.3913 -1.1886 0.0069 27 6 2.2983 -1.0897 0.0057 28 6 1.8472 -2.5275 0.0118 29 1 -0.3633 0.0054 1.0277 30 1 -0.3633 0.8873 -0.5185 31 1 -0.3633 -0.8927 -0.5091 32 1 4.4611 2.5864 -0.4473 33 1 5.4598 0.8878 1.8856 34 1 4.4335 2.3373 2.0079 35 1 6.8206 2.8807 2.4379 36 1 6.2228 3.7001 0.9754 37 1 9.0134 3.0468 1.7459 38 1 8.6723 3.7800 0.1601 39 1 10.9990 3.7887 -0.4725 40 1 11.5130 3.0562 1.0662 41 1 15.3415 2.3614 -1.5746 42 1 6.8510 2.8772 -1.2031 43 1 7.9102 1.4535 -1.3404 44 1 6.1202 0.0230 -0.4038 45 1 5.5477 0.8780 -1.8571 46 1 1.7377 -2.8696 1.0410 47 1 0.8896 -2.6100 -0.5024 48 1 2.5879 -3.1429 -0.4988 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886669599.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:13 Heat of formation + Delta-G solvation = 38.874707 kcal Electronic energy + Delta-G solvation = -25953.830675 eV Core-core repulsion = 22428.608102 eV Total energy + Delta-G solvation = -3525.222573 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.17522 -40.22275 -38.04619 -35.91837 -35.09088 -34.01130 -33.66425 -32.57354 -31.80700 -29.38536 -29.17733 -26.95899 -24.93755 -24.19338 -23.46104 -23.05293 -21.87492 -20.95671 -20.22095 -18.91178 -18.27285 -18.18761 -16.99624 -16.45359 -16.18654 -15.85202 -15.65290 -15.61270 -15.06831 -14.76734 -14.51857 -14.47031 -14.25527 -14.13693 -13.88208 -13.72773 -13.66909 -13.50962 -13.41431 -13.24778 -13.14691 -12.95443 -12.88244 -12.73280 -12.45652 -12.18420 -12.04246 -11.91481 -11.71665 -11.65497 -11.46201 -11.40159 -11.07902 -10.92298 -10.78252 -10.72552 -9.17417 -8.99271 -8.23750 -6.29121 1.05897 1.44513 1.45083 1.56159 2.06581 2.07530 2.15046 2.18826 2.41814 2.92393 3.13053 3.27181 3.34932 3.72898 3.85131 4.04469 4.09227 4.13990 4.22598 4.30415 4.34829 4.41321 4.47756 4.49673 4.52956 4.66526 4.71004 4.71899 4.78326 4.85852 4.89941 4.91377 4.99139 5.02720 5.05183 5.07989 5.10302 5.12706 5.21107 5.27139 5.35070 5.36721 5.46462 5.65070 5.88526 6.12931 6.23894 6.28362 6.49009 6.78525 6.93174 7.15612 7.35243 8.93043 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.028285 B = 0.002397 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.697920 B =11677.486344 C =12063.722680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.033 4.033 3 N -0.522 5.522 4 C 0.214 3.786 5 C 0.005 3.995 6 C -0.097 4.097 7 C 0.061 3.939 8 N -0.556 5.556 9 C 0.070 3.930 10 C 0.025 3.975 11 H 0.114 0.886 12 C 0.265 3.735 13 N -0.517 5.517 14 C -0.004 4.004 15 C -0.528 4.528 16 H 0.028 0.972 17 C 0.001 3.999 18 N -0.955 5.955 19 Si 0.947 3.053 20 H -0.277 1.277 21 H -0.291 1.291 22 H -0.222 1.222 23 C 0.050 3.950 24 C -0.105 4.105 25 N -0.558 5.558 26 H 0.426 0.574 27 C -0.031 4.031 28 C -0.074 4.074 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.026 0.974 41 H 0.264 0.736 42 H 0.056 0.944 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.096 0.904 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.377 0.357 2.599 28.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.161 4.161 3 N -0.243 5.243 4 C -0.050 4.050 5 C -0.015 4.015 6 C -0.136 4.136 7 C -0.066 4.066 8 N -0.282 5.282 9 C -0.059 4.059 10 C 0.003 3.997 11 H 0.132 0.868 12 C -0.052 4.052 13 N -0.195 5.195 14 C -0.043 4.043 15 C -0.566 4.566 16 H 0.047 0.953 17 C -0.195 4.195 18 N -0.595 5.595 19 Si 0.770 3.230 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.144 1.144 23 C -0.077 4.077 24 C -0.144 4.144 25 N -0.162 5.162 26 H 0.265 0.735 27 C -0.146 4.146 28 C -0.132 4.132 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.044 0.956 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.115 0.885 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -28.233 -0.697 3.675 28.479 hybrid contribution 1.527 0.163 -0.487 1.611 sum -26.706 -0.535 3.187 26.901 Atomic orbital electron populations 1.20071 0.86256 1.03142 1.02530 1.21065 0.97740 0.88147 1.09130 1.70084 1.00754 1.31841 1.21590 1.23248 0.94732 0.82232 1.04790 1.19677 0.87843 0.96413 0.97584 1.21525 0.96724 1.00495 0.94819 1.22054 0.90368 0.95586 0.98590 1.61866 1.03565 1.50959 1.11774 1.22117 0.86798 0.94740 1.02236 1.19111 0.96999 0.86418 0.97157 0.86849 1.29402 0.89624 0.93920 0.92211 1.80991 1.12212 1.13518 1.12744 1.19603 0.90914 0.96382 0.97394 1.21395 0.96444 1.03071 1.35737 0.95330 1.26054 0.95941 1.02442 0.95098 1.70095 1.04333 1.40590 1.44503 0.85709 0.79839 0.79559 0.77866 1.20319 1.21705 1.14386 1.22171 0.97129 0.99497 0.88946 1.21596 0.93508 0.99140 1.00149 1.43154 1.08657 1.07888 1.56521 0.73479 1.21547 0.83463 0.98614 1.11014 1.20333 1.02758 0.86536 1.03588 0.91094 0.92026 0.89369 0.88201 0.92480 0.90807 0.90053 0.92879 0.89597 0.90143 0.91742 0.95586 0.92728 0.92608 0.90356 0.91948 0.90296 0.90107 0.88523 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.22 71.24 0.73 -0.21 16 2 C -0.03 -0.70 7.09 41.39 0.29 -0.41 16 3 N -0.52 -13.35 11.25 -176.28 -1.98 -15.33 16 4 C 0.21 4.61 6.88 138.13 0.95 5.56 16 5 C 0.01 0.09 2.73 -11.46 -0.03 0.06 16 6 C -0.10 -1.73 5.36 30.65 0.16 -1.57 16 7 C 0.06 1.07 5.46 86.33 0.47 1.54 16 8 N -0.56 -11.76 4.36 -896.36 -3.91 -15.67 16 9 C 0.07 1.60 4.32 86.30 0.37 1.97 16 10 C 0.02 0.80 2.13 -12.60 -0.03 0.77 16 11 H 0.11 3.49 6.22 -2.39 -0.01 3.48 16 12 C 0.26 10.49 13.67 89.44 1.22 11.71 16 13 N -0.52 -23.08 18.54 20.01 0.37 -22.71 16 14 C 0.00 -0.15 3.49 29.85 0.10 -0.05 16 15 C -0.53 -28.07 9.15 25.60 0.23 -27.83 16 16 H 0.03 1.72 7.84 -2.91 -0.02 1.70 16 17 C 0.00 0.07 5.47 84.65 0.46 0.53 16 18 N -0.95 -58.73 13.96 21.45 0.30 -58.43 16 19 Si 0.95 40.96 27.47 68.60 1.88 42.85 16 20 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.22 -8.06 6.54 99.48 0.65 -7.41 16 23 C 0.05 0.94 5.30 86.33 0.46 1.40 16 24 C -0.11 -1.82 5.16 30.65 0.16 -1.66 16 25 N -0.56 -10.19 5.91 -174.60 -1.03 -11.22 16 26 H 0.43 6.18 8.08 -92.71 -0.75 5.43 16 27 C -0.03 -0.55 7.24 40.95 0.30 -0.25 16 28 C -0.07 -0.75 10.22 71.24 0.73 -0.02 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 0.87 7.17 -2.39 -0.02 0.86 16 32 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.08 1.38 8.01 -2.39 -0.02 1.37 16 36 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.09 1.92 7.99 -2.39 -0.02 1.90 16 38 H 0.08 1.49 8.12 -2.38 -0.02 1.47 16 39 H 0.06 2.23 7.20 -2.39 -0.02 2.21 16 40 H 0.03 1.01 7.57 -2.39 -0.02 0.99 16 41 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 42 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.08 1.64 6.12 -2.39 -0.01 1.62 16 44 H 0.06 1.14 7.31 -2.38 -0.02 1.13 16 45 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.10 0.69 7.18 -2.39 -0.02 0.67 16 48 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -74.40 384.67 2.37 -72.03 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.15 Total: 16.94 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: 6.59 Total: -8.46 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -6.25 Total: -123.36 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 1.88 Total: 42.85 kcal Total: -74.40 2.37 -72.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886669599.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.905 kcal (2) G-P(sol) polarization free energy of solvation -74.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds