Wall clock time and date at job start Tue Mar 31 2020 12:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34947 * 126.03361 * 2 1 4 4 C 1.35321 * 107.74344 * 180.14973 * 3 2 1 5 5 C 1.50699 * 126.04254 * 179.87589 * 4 3 2 6 6 N 1.46891 * 109.47054 * 259.68562 * 5 4 3 7 7 C 1.46900 * 110.99857 * 189.99631 * 6 5 4 8 8 C 1.50702 * 109.46804 * 160.92569 * 7 6 5 9 9 H 1.07998 * 120.00248 * 355.69049 * 8 7 6 10 10 C 1.37885 * 119.99808 * 175.69280 * 8 7 6 11 11 N 1.31512 * 119.99760 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99822 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47385 * 59.99735 * 12 10 8 14 14 H 1.48500 * 109.47098 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47026 * 299.99764 * 12 10 8 16 16 C 1.46909 * 111.00003 * 66.04509 * 6 5 4 17 17 C 1.53004 * 109.46973 * 61.39168 * 16 6 5 18 18 C 1.47195 * 109.47034 * 183.25248 * 17 16 6 19 19 N 6.00620 * 98.92601 * 326.58571 * 2 1 3 20 20 C 1.39877 * 107.91638 * 359.60724 * 4 3 2 21 21 C 1.50699 * 125.89551 * 180.26612 * 20 4 3 22 22 C 1.54273 * 110.02994 * 237.17107 * 21 20 4 23 23 C 1.54889 * 104.19200 * 217.10401 * 22 21 20 24 24 C 1.54896 * 102.75028 * 37.94309 * 23 22 21 25 25 C 1.53867 * 110.03339 * 120.00338 * 21 20 4 26 26 N 1.30830 * 108.20364 * 0.24775 * 20 4 3 27 27 H 1.08995 * 109.47153 * 270.26222 * 1 2 3 28 28 H 1.09008 * 109.47207 * 30.25978 * 1 2 3 29 29 H 1.09001 * 109.47305 * 150.25603 * 1 2 3 30 30 H 1.07994 * 126.13206 * 359.97438 * 3 2 1 31 31 H 1.09000 * 109.47256 * 139.68783 * 5 4 3 32 32 H 1.08996 * 109.46714 * 19.69156 * 5 4 3 33 33 H 1.09002 * 109.47120 * 280.92133 * 7 6 5 34 34 H 1.08997 * 109.47183 * 40.92994 * 7 6 5 35 35 H 0.97008 * 119.99498 * 180.02562 * 11 10 8 36 36 H 1.09001 * 109.47069 * 181.38763 * 16 6 5 37 37 H 1.08994 * 109.47091 * 301.39290 * 16 6 5 38 38 H 1.08999 * 109.47137 * 303.25587 * 17 16 6 39 39 H 1.09004 * 109.47063 * 63.24983 * 17 16 6 40 40 H 1.09004 * 110.01835 * 358.60392 * 21 20 4 41 41 H 1.09003 * 110.48357 * 335.77908 * 22 21 20 42 42 H 1.09002 * 110.49038 * 98.42662 * 22 21 20 43 43 H 1.08998 * 110.76104 * 279.62222 * 23 22 21 44 44 H 1.09003 * 110.75352 * 156.25479 * 23 22 21 45 45 H 1.09000 * 110.48267 * 203.37851 * 24 23 22 46 46 H 1.08997 * 110.59967 * 80.78826 * 24 23 22 47 47 H 1.09005 * 110.03545 * 238.56512 * 25 21 20 48 48 H 1.09001 * 110.03731 * 359.94722 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0034 5 6 4.7680 1.5453 -0.0072 6 7 5.3066 1.6286 -1.3713 7 6 6.6250 2.2764 -1.3781 8 6 7.3441 1.9385 -2.6587 9 1 6.8993 1.2506 -3.3624 10 6 8.5700 2.5076 -2.9318 11 7 9.1118 3.3449 -2.0745 12 14 9.4616 2.0882 -4.5187 13 1 8.6190 2.4778 -5.6778 14 1 10.7496 2.8253 -4.5725 15 1 9.7254 0.6276 -4.5672 16 6 4.3723 2.3270 -2.2645 17 6 4.1601 3.7569 -1.7633 18 6 3.1650 4.4318 -2.6123 19 7 2.3969 4.9527 -3.2675 20 6 3.5346 -0.7321 0.0036 21 6 4.7496 -1.6236 0.0085 22 6 4.7113 -2.5758 -1.2047 23 6 5.2900 -3.9060 -0.6618 24 6 4.7064 -3.9730 0.7715 25 6 4.7465 -2.5119 1.2649 26 7 2.2892 -1.1327 0.0056 27 1 -0.3633 0.0047 1.0276 28 1 -0.3634 0.8877 -0.5179 29 1 -0.3634 -0.8923 -0.5098 30 1 1.9281 2.1193 -0.0004 31 1 5.5220 1.1209 0.6557 32 1 4.4999 2.5433 0.3393 33 1 6.4994 3.3568 -1.3062 34 1 7.2088 1.9211 -0.5290 35 1 9.9741 3.7455 -2.2668 36 1 4.7847 2.3529 -3.2731 37 1 3.4180 1.8005 -2.2755 38 1 3.8024 3.7319 -0.7340 39 1 5.1037 4.3010 -1.8068 40 1 5.6562 -1.0189 -0.0191 41 1 3.6859 -2.7171 -1.5464 42 1 5.3338 -2.1903 -2.0121 43 1 6.3790 -3.8709 -0.6342 44 1 4.9447 -4.7498 -1.2593 45 1 5.3254 -4.6072 1.4061 46 1 3.6805 -4.3407 0.7510 47 1 5.6520 -2.3391 1.8467 48 1 3.8667 -2.2977 1.8716 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893304153.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:03 Heat of formation + Delta-G solvation = 95.687613 kcal Electronic energy + Delta-G solvation = -27094.711684 eV Core-core repulsion = 23571.952703 eV Total energy + Delta-G solvation = -3522.758981 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.17117 -37.73445 -37.70711 -35.95846 -33.33425 -32.63266 -30.95333 -30.06461 -29.09863 -28.44271 -27.28278 -25.92090 -24.60017 -23.16516 -21.43820 -20.60067 -20.34839 -19.58051 -18.48297 -17.43728 -16.62364 -16.09379 -15.60934 -15.40585 -15.03388 -14.99750 -14.60801 -14.27182 -13.80687 -13.73975 -13.42141 -13.16605 -13.12914 -13.04189 -12.65189 -12.55516 -12.22787 -12.01208 -11.86172 -11.50417 -11.23666 -11.16114 -11.07691 -11.04729 -10.93759 -10.80953 -10.73189 -10.56398 -10.44129 -10.36410 -10.22781 -10.04265 -9.81533 -9.30871 -8.93298 -8.43283 -8.10208 -7.28252 -6.03646 -4.04392 2.07182 2.65691 3.01064 3.04632 3.06818 3.34344 3.38849 3.42201 4.31239 4.44001 4.53339 4.83993 4.86088 4.90161 5.00462 5.05943 5.11497 5.28275 5.32055 5.32999 5.40066 5.51643 5.56231 5.66568 5.67783 5.77617 5.79218 5.85827 5.89647 5.96587 6.08143 6.10347 6.11708 6.24110 6.26896 6.35210 6.43958 6.49677 6.53153 6.64626 6.71482 6.96099 7.16169 7.21390 7.27517 7.81054 7.83428 7.98984 8.06636 8.13135 8.50189 9.03939 9.60447 11.06197 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.009179 B = 0.005087 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.859405 B = 5503.222011 C = 7809.435858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.385 5.385 3 C 0.046 3.954 4 C -0.208 4.208 5 C 0.122 3.878 6 N -0.518 5.518 7 C 0.185 3.815 8 C -0.504 4.504 9 H 0.063 0.937 10 C 0.058 3.942 11 N -0.899 5.899 12 Si 0.893 3.107 13 H -0.278 1.278 14 H -0.289 1.289 15 H -0.276 1.276 16 C 0.076 3.924 17 C -0.077 4.077 18 C 0.224 3.776 19 N -0.463 5.463 20 C 0.110 3.890 21 C -0.009 4.009 22 C -0.110 4.110 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.114 4.114 26 N -0.300 5.300 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.164 0.836 31 H 0.078 0.922 32 H 0.034 0.966 33 H 0.005 0.995 34 H 0.029 0.971 35 H 0.261 0.739 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.100 0.900 39 H 0.121 0.879 40 H 0.101 0.899 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.065 0.935 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.320 -8.420 8.087 16.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.167 5.167 3 C -0.100 4.100 4 C -0.220 4.220 5 C -0.007 4.007 6 N -0.241 5.241 7 C 0.061 3.939 8 C -0.542 4.542 9 H 0.081 0.919 10 C -0.144 4.144 11 N -0.539 5.539 12 Si 0.721 3.279 13 H -0.204 1.204 14 H -0.215 1.215 15 H -0.202 1.202 16 C -0.054 4.054 17 C -0.118 4.118 18 C -0.093 4.093 19 N -0.141 5.141 20 C -0.056 4.056 21 C -0.030 4.030 22 C -0.148 4.148 23 C -0.162 4.162 24 C -0.159 4.159 25 C -0.152 4.152 26 N -0.122 5.122 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.181 0.819 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.023 0.977 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.118 0.882 39 H 0.139 0.861 40 H 0.120 0.880 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.197 -8.999 6.977 18.200 hybrid contribution 1.112 1.425 -0.296 1.831 sum -13.086 -7.574 6.682 16.530 Atomic orbital electron populations 1.21721 0.74937 1.04055 1.02730 1.48251 1.06058 1.03965 1.58390 1.22231 0.91001 0.92995 1.03729 1.20016 0.94030 0.93814 1.14126 1.20414 0.92646 0.95407 0.92213 1.62360 1.03706 1.52034 1.05968 1.19882 0.83275 0.92636 0.98122 1.21108 1.02938 1.26000 1.04183 0.91863 1.24937 0.97432 0.95178 0.96810 1.69928 1.17929 1.30328 1.35684 0.86642 0.78844 0.78578 0.83840 1.20385 1.21509 1.20177 1.21993 0.96920 0.87349 0.99168 1.20307 0.95367 0.99384 0.96782 1.29353 0.93553 0.92799 0.93618 1.81142 1.11905 1.10570 1.10518 1.22041 0.92744 0.93172 0.97659 1.20264 0.93358 0.94298 0.95066 1.22366 1.01347 0.93903 0.97198 1.22502 1.00389 0.97502 0.95829 1.22323 1.00599 0.96429 0.96502 1.22193 1.01679 0.94378 0.96982 1.77226 1.01325 1.07494 1.26144 0.91333 0.89967 0.89687 0.81871 0.90319 0.94843 0.97737 0.95305 0.92921 0.89493 0.91944 0.88221 0.86119 0.88045 0.91639 0.90734 0.91332 0.92036 0.92198 0.91966 0.91662 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.89 11.47 59.85 0.69 1.57 16 2 N -0.38 -4.88 4.01 -68.16 -0.27 -5.15 16 3 C 0.05 0.58 10.70 -17.22 -0.18 0.40 16 4 C -0.21 -2.99 4.69 -105.05 -0.49 -3.49 16 5 C 0.12 1.84 4.70 -4.98 -0.02 1.82 16 6 N -0.52 -9.28 4.63 -237.52 -1.10 -10.38 16 7 C 0.19 4.10 4.63 -4.97 -0.02 4.07 16 8 C -0.50 -12.77 8.61 -34.44 -0.30 -13.07 16 9 H 0.06 1.62 7.81 -52.49 -0.41 1.22 16 10 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 11 N -0.90 -24.84 13.29 55.43 0.74 -24.10 16 12 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 C 0.08 1.25 5.00 -3.82 -0.02 1.23 16 17 C -0.08 -1.08 5.08 -29.52 -0.15 -1.23 16 18 C 0.22 3.46 15.43 -20.76 -0.32 3.14 16 19 N -0.46 -8.10 18.54 42.15 0.78 -7.32 16 20 C 0.11 1.65 5.45 -82.41 -0.45 1.21 16 21 C -0.01 -0.13 3.34 -90.65 -0.30 -0.44 16 22 C -0.11 -1.51 6.35 -25.07 -0.16 -1.67 16 23 C -0.12 -1.45 6.91 -24.73 -0.17 -1.62 16 24 C -0.12 -1.34 6.83 -25.07 -0.17 -1.51 16 25 C -0.11 -1.40 6.45 -25.62 -0.17 -1.56 16 26 N -0.30 -4.50 12.32 33.67 0.41 -4.08 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.16 1.62 8.06 -52.49 -0.42 1.19 16 31 H 0.08 1.23 7.42 -51.93 -0.39 0.84 16 32 H 0.03 0.45 5.97 -51.93 -0.31 0.14 16 33 H 0.00 0.11 5.83 -51.93 -0.30 -0.19 16 34 H 0.03 0.69 7.75 -51.93 -0.40 0.29 16 35 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.09 1.61 7.55 -51.93 -0.39 1.22 16 37 H 0.06 0.97 6.70 -51.93 -0.35 0.63 16 38 H 0.10 1.17 6.15 -51.93 -0.32 0.85 16 39 H 0.12 1.90 6.33 -51.93 -0.33 1.58 16 40 H 0.10 1.56 7.24 -51.93 -0.38 1.19 16 41 H 0.06 0.96 7.65 -51.93 -0.40 0.56 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.06 0.80 7.66 -51.93 -0.40 0.40 16 LS Contribution 388.43 15.07 5.85 5.85 Total: -1.00 -29.90 388.43 -8.68 -38.57 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -7.73 Total: 0.61 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -2.34 Total: -9.74 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 0.56 Total: -51.03 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.90 -8.68 -38.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893304153.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.261 kcal (2) G-P(sol) polarization free energy of solvation -29.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds