Wall clock time and date at job start Tue Mar 31 2020 11:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46466 * 2 1 4 4 C 1.52994 * 109.47293 * 240.00204 * 2 1 3 5 5 C 1.50704 * 109.47321 * 119.99397 * 2 1 3 6 6 C 1.38614 * 125.50567 * 75.03313 * 5 2 1 7 7 C 1.38514 * 107.60187 * 179.97438 * 6 5 2 8 8 C 1.41449 * 133.86443 * 179.97438 * 7 6 5 9 9 N 1.38517 * 120.28035 * 0.02562 * 8 7 6 10 10 C 1.46496 * 119.99887 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.46995 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.46626 * 299.99666 * 11 10 9 13 13 C 1.52997 * 109.47164 * 59.99963 * 11 10 9 14 14 C 1.50698 * 109.47184 * 180.02562 * 11 10 9 15 15 H 1.08005 * 119.99819 * 359.97438 * 14 11 10 16 16 C 1.37875 * 120.00046 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00192 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99979 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47418 * 89.99710 * 18 16 14 20 20 H 1.48498 * 109.47091 * 209.99770 * 18 16 14 21 21 H 1.48508 * 109.47394 * 329.99535 * 18 16 14 22 22 N 1.31923 * 119.44309 * 180.27753 * 8 7 6 23 23 C 1.33725 * 121.14209 * 359.48647 * 22 8 7 24 24 C 1.34729 * 121.48210 * 0.50473 * 23 22 8 25 25 N 1.37110 * 119.93412 * 359.76441 * 24 23 22 26 26 N 1.31594 * 125.51344 * 254.98032 * 5 2 1 27 27 H 1.08994 * 109.47353 * 299.99903 * 1 2 3 28 28 H 1.08996 * 109.47511 * 60.00125 * 1 2 3 29 29 H 1.09001 * 109.46738 * 179.97438 * 1 2 3 30 30 H 1.09010 * 109.47001 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47363 * 299.99367 * 3 2 1 32 32 H 1.09001 * 109.47598 * 60.00195 * 3 2 1 33 33 H 1.09001 * 109.47102 * 299.99621 * 4 2 1 34 34 H 1.09004 * 109.47244 * 59.99672 * 4 2 1 35 35 H 1.08998 * 109.47291 * 179.97438 * 4 2 1 36 36 H 1.08000 * 126.20372 * 359.97438 * 6 5 2 37 37 H 0.96998 * 119.99921 * 0.02562 * 9 8 7 38 38 H 1.09001 * 109.47464 * 60.00577 * 10 9 8 39 39 H 1.09001 * 109.47459 * 300.00292 * 10 9 8 40 40 H 1.09000 * 109.47160 * 60.00369 * 12 11 10 41 41 H 1.09002 * 109.46719 * 180.02562 * 12 11 10 42 42 H 1.08993 * 109.47839 * 299.99931 * 12 11 10 43 43 H 1.09001 * 109.47375 * 59.99966 * 13 11 10 44 44 H 1.09002 * 109.46777 * 180.02562 * 13 11 10 45 45 H 1.09000 * 109.47140 * 299.99948 * 13 11 10 46 46 H 0.96996 * 120.00505 * 179.97438 * 17 16 14 47 47 H 1.08004 * 119.25977 * 180.24952 * 23 22 8 48 48 H 1.07995 * 120.03018 * 179.74278 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7103 1.2306 6 6 2.0260 -2.0824 1.4271 7 6 2.5696 -2.3291 2.6770 8 6 2.8220 -3.5051 3.4214 9 7 2.5011 -4.7462 2.8967 10 6 2.7657 -5.9602 3.6728 11 6 2.3220 -7.1852 2.8705 12 6 0.8243 -7.0856 2.5742 13 6 3.0998 -7.2417 1.5541 14 6 2.5936 -8.4340 3.6690 15 1 3.0385 -8.3612 4.6505 16 6 2.2750 -9.6694 3.1464 17 7 1.7337 -9.7580 1.9511 18 14 2.6123 -11.2174 4.1360 19 1 1.4264 -11.5404 4.9694 20 1 2.8894 -12.3456 3.2110 21 1 3.7894 -10.9969 5.0143 22 7 3.3610 -3.4096 4.6217 23 6 3.6824 -2.2208 5.1429 24 6 3.4606 -1.0745 4.4705 25 7 2.8979 -1.1124 3.2208 26 7 2.5489 -0.1283 2.2918 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4427 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6768 -1.7489 -1.2492 34 1 1.6767 -0.2073 -2.1392 35 1 3.1300 -0.7208 -1.2494 36 1 1.6630 -2.8248 0.7317 37 1 2.1019 -4.8115 2.0151 38 1 2.2119 -5.9198 4.6107 39 1 3.8327 -6.0313 3.8836 40 1 0.6275 -6.1823 1.9967 41 1 0.5082 -7.9585 2.0030 42 1 0.2702 -7.0453 3.5119 43 1 4.1668 -7.3126 1.7653 44 1 2.7834 -8.1142 0.9824 45 1 2.9029 -6.3384 0.9767 46 1 1.5099 -10.6271 1.5832 47 1 4.1259 -2.1782 6.1268 48 1 3.7256 -0.1269 4.9155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894158217.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:46 Heat of formation + Delta-G solvation = 99.748641 kcal Electronic energy + Delta-G solvation = -26752.920147 eV Core-core repulsion = 23230.337266 eV Total energy + Delta-G solvation = -3522.582881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.10585 -38.79769 -37.29974 -36.21339 -34.46573 -32.03215 -31.09068 -30.06040 -28.50719 -27.40363 -27.29442 -25.76832 -25.70655 -25.01503 -23.63216 -22.65302 -21.63848 -19.25547 -18.74452 -18.16525 -17.04686 -16.15860 -15.80061 -15.65963 -15.29354 -14.95440 -14.59160 -14.34271 -13.98238 -13.88383 -13.78829 -13.75444 -13.00225 -12.70064 -12.56015 -12.32415 -12.30987 -12.25197 -11.80490 -11.57898 -11.39979 -11.24985 -11.22406 -11.20450 -10.99511 -10.72957 -10.68308 -10.56107 -10.34554 -10.22348 -9.67129 -9.47955 -9.47364 -9.37668 -8.83148 -8.59725 -8.40596 -7.02282 -6.05378 -4.15746 1.07671 1.23543 2.25489 2.68623 3.26218 3.33482 3.35813 3.46115 3.79761 4.20369 4.35694 4.36690 4.57064 4.78661 4.82796 4.88070 5.17022 5.21609 5.30954 5.45973 5.46979 5.50011 5.64057 5.66025 5.68956 5.74792 5.77280 5.91381 5.97791 6.08535 6.14603 6.15354 6.23528 6.27837 6.46266 6.55857 6.76159 6.78220 6.84708 6.88982 6.97777 7.22121 7.42458 7.51383 7.58135 7.65147 7.69166 7.96768 8.08106 8.31972 8.41464 8.84652 9.50323 10.96102 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018480 B = 0.003161 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.827912 B = 8854.711782 C = 9997.262156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.014 3.986 3 C -0.136 4.136 4 C -0.139 4.139 5 C 0.093 3.907 6 C -0.242 4.242 7 C 0.022 3.978 8 C 0.456 3.544 9 N -0.675 5.675 10 C 0.140 3.860 11 C 0.056 3.944 12 C -0.132 4.132 13 C -0.132 4.132 14 C -0.506 4.506 15 H 0.058 0.942 16 C 0.067 3.933 17 N -0.885 5.885 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 N -0.549 5.549 23 C 0.100 3.900 24 C -0.049 4.049 25 N -0.234 5.234 26 N -0.298 5.298 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.153 0.847 37 H 0.411 0.589 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.005 0.995 41 H 0.086 0.914 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.086 0.914 45 H 0.005 0.995 46 H 0.260 0.740 47 H 0.174 0.826 48 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.259 18.038 -3.323 18.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.012 3.988 3 C -0.193 4.193 4 C -0.197 4.197 5 C -0.063 4.063 6 C -0.275 4.275 7 C -0.105 4.105 8 C 0.198 3.802 9 N -0.305 5.305 10 C 0.018 3.982 11 C 0.055 3.945 12 C -0.189 4.189 13 C -0.189 4.189 14 C -0.545 4.545 15 H 0.077 0.923 16 C -0.135 4.135 17 N -0.524 5.524 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 N -0.276 5.276 23 C -0.043 4.043 24 C -0.177 4.177 25 N -0.004 5.004 26 N -0.126 5.126 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.170 0.830 37 H 0.249 0.751 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.024 0.976 41 H 0.105 0.895 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.105 0.895 45 H 0.024 0.976 46 H 0.070 0.930 47 H 0.191 0.809 48 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.240 18.247 -2.244 18.386 hybrid contribution -0.253 -0.893 -0.414 1.017 sum -0.013 17.354 -2.657 17.556 Atomic orbital electron populations 1.21867 0.92990 1.02629 1.02071 1.19022 0.95640 0.94839 0.89294 1.21789 1.01355 0.94278 1.01887 1.21886 1.01466 1.00703 0.95646 1.21998 0.97184 0.92497 0.94595 1.21058 1.13627 0.96023 0.96775 1.19918 1.06218 0.87775 0.96572 1.18227 0.89079 0.84811 0.88107 1.45142 1.62309 1.02464 1.20576 1.21844 1.00203 0.81790 0.94407 1.18383 0.92566 0.90753 0.92809 1.21843 0.97927 0.99750 0.99428 1.21841 0.98436 0.99959 0.98697 1.20955 1.41149 0.89964 1.02412 0.92337 1.24874 0.94768 0.98887 0.94936 1.69795 1.42488 1.24240 1.15850 0.86570 0.78689 0.82696 0.79907 1.20708 1.21271 1.19879 1.68036 1.21879 1.26711 1.11009 1.21829 0.97405 0.85292 0.99745 1.21833 1.09119 1.02017 0.84704 1.45983 1.37769 1.04667 1.11988 1.77705 1.25369 1.09787 0.99725 0.92478 0.91756 0.91922 0.92466 0.92335 0.92048 0.91771 0.91780 0.92332 0.82980 0.75070 0.92233 0.92248 0.97584 0.89511 0.95367 0.95359 0.89512 0.97584 0.92960 0.80914 0.81893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.46 37.16 0.31 -0.95 16 2 C 0.01 0.15 0.96 -155.66 -0.15 0.00 16 3 C -0.14 -1.30 8.02 37.16 0.30 -1.00 16 4 C -0.14 -1.26 8.19 37.15 0.30 -0.95 16 5 C 0.09 1.28 5.62 -82.55 -0.46 0.81 16 6 C -0.24 -3.50 9.87 -39.34 -0.39 -3.89 16 7 C 0.02 0.36 6.78 -84.12 -0.57 -0.21 16 8 C 0.46 7.83 7.55 -155.01 -1.17 6.66 16 9 N -0.68 -11.83 5.10 -60.01 -0.31 -12.14 16 10 C 0.14 2.81 4.54 -4.04 -0.02 2.79 16 11 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 12 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 13 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 14 C -0.51 -12.88 8.01 -34.44 -0.28 -13.15 16 15 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 16 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 17 N -0.89 -23.17 9.35 55.43 0.52 -22.65 16 18 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 22 N -0.55 -9.32 9.68 -12.47 -0.12 -9.44 16 23 C 0.10 1.35 11.05 -17.97 -0.20 1.15 16 24 C -0.05 -0.65 11.25 -16.43 -0.18 -0.83 16 25 N -0.23 -3.69 3.97 -10.53 -0.04 -3.73 16 26 N -0.30 -4.59 11.96 33.54 0.40 -4.19 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.64 8.07 -51.93 -0.42 0.22 16 33 H 0.06 0.57 7.48 -51.93 -0.39 0.19 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.15 1.92 7.66 -52.49 -0.40 1.51 16 37 H 0.41 6.79 5.94 -40.82 -0.24 6.54 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 41 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 45 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 46 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 47 H 0.17 1.67 8.06 -52.48 -0.42 1.24 16 48 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 379.76 15.07 5.72 5.72 Total: -1.00 -28.18 379.76 -8.75 -36.93 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -7.83 Total: 6.16 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -2.07 Total: -11.99 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: 0.45 Total: -52.15 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.18 -8.75 -36.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894158217.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.681 kcal (2) G-P(sol) polarization free energy of solvation -28.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds