Wall clock time and date at job start Tue Mar 31 2020 11:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46466 * 2 1 4 4 C 1.52994 * 109.47293 * 240.00204 * 2 1 3 5 5 C 1.50704 * 109.47321 * 119.99397 * 2 1 3 6 6 C 1.38614 * 125.50567 * 75.03313 * 5 2 1 7 7 C 1.38514 * 107.60187 * 179.97438 * 6 5 2 8 8 C 1.41449 * 133.86443 * 179.97438 * 7 6 5 9 9 N 1.38517 * 120.28035 * 0.02562 * 8 7 6 10 10 C 1.46496 * 119.99887 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.46995 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.46626 * 299.99666 * 11 10 9 13 13 C 1.52997 * 109.47164 * 59.99963 * 11 10 9 14 14 C 1.50698 * 109.47184 * 180.02562 * 11 10 9 15 15 H 1.08005 * 119.99819 * 359.97438 * 14 11 10 16 16 C 1.37875 * 120.00046 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00192 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99979 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47418 * 89.99710 * 18 16 14 20 20 H 1.48498 * 109.47091 * 209.99770 * 18 16 14 21 21 H 1.48508 * 109.47394 * 329.99535 * 18 16 14 22 22 N 1.31923 * 119.44309 * 180.27753 * 8 7 6 23 23 C 1.33725 * 121.14209 * 359.48647 * 22 8 7 24 24 C 1.34729 * 121.48210 * 0.50473 * 23 22 8 25 25 N 1.37110 * 119.93412 * 359.76441 * 24 23 22 26 26 N 1.31594 * 125.51344 * 254.98032 * 5 2 1 27 27 H 1.08994 * 109.47353 * 299.99903 * 1 2 3 28 28 H 1.08996 * 109.47511 * 60.00125 * 1 2 3 29 29 H 1.09001 * 109.46738 * 179.97438 * 1 2 3 30 30 H 1.09010 * 109.47001 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47363 * 299.99367 * 3 2 1 32 32 H 1.09001 * 109.47598 * 60.00195 * 3 2 1 33 33 H 1.09001 * 109.47102 * 299.99621 * 4 2 1 34 34 H 1.09004 * 109.47244 * 59.99672 * 4 2 1 35 35 H 1.08998 * 109.47291 * 179.97438 * 4 2 1 36 36 H 1.08000 * 126.20372 * 359.97438 * 6 5 2 37 37 H 0.96998 * 119.99921 * 0.02562 * 9 8 7 38 38 H 1.09001 * 109.47464 * 60.00577 * 10 9 8 39 39 H 1.09001 * 109.47459 * 300.00292 * 10 9 8 40 40 H 1.09000 * 109.47160 * 60.00369 * 12 11 10 41 41 H 1.09002 * 109.46719 * 180.02562 * 12 11 10 42 42 H 1.08993 * 109.47839 * 299.99931 * 12 11 10 43 43 H 1.09001 * 109.47375 * 59.99966 * 13 11 10 44 44 H 1.09002 * 109.46777 * 180.02562 * 13 11 10 45 45 H 1.09000 * 109.47140 * 299.99948 * 13 11 10 46 46 H 0.96996 * 120.00505 * 179.97438 * 17 16 14 47 47 H 1.08004 * 119.25977 * 180.24952 * 23 22 8 48 48 H 1.07995 * 120.03018 * 179.74278 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7103 1.2306 6 6 2.0260 -2.0824 1.4271 7 6 2.5696 -2.3291 2.6770 8 6 2.8220 -3.5051 3.4214 9 7 2.5011 -4.7462 2.8967 10 6 2.7657 -5.9602 3.6728 11 6 2.3220 -7.1852 2.8705 12 6 0.8243 -7.0856 2.5742 13 6 3.0998 -7.2417 1.5541 14 6 2.5936 -8.4340 3.6690 15 1 3.0385 -8.3612 4.6505 16 6 2.2750 -9.6694 3.1464 17 7 1.7337 -9.7580 1.9511 18 14 2.6123 -11.2174 4.1360 19 1 1.4264 -11.5404 4.9694 20 1 2.8894 -12.3456 3.2110 21 1 3.7894 -10.9969 5.0143 22 7 3.3610 -3.4096 4.6217 23 6 3.6824 -2.2208 5.1429 24 6 3.4606 -1.0745 4.4705 25 7 2.8979 -1.1124 3.2208 26 7 2.5489 -0.1283 2.2918 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4427 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6768 -1.7489 -1.2492 34 1 1.6767 -0.2073 -2.1392 35 1 3.1300 -0.7208 -1.2494 36 1 1.6630 -2.8248 0.7317 37 1 2.1019 -4.8115 2.0151 38 1 2.2119 -5.9198 4.6107 39 1 3.8327 -6.0313 3.8836 40 1 0.6275 -6.1823 1.9967 41 1 0.5082 -7.9585 2.0030 42 1 0.2702 -7.0453 3.5119 43 1 4.1668 -7.3126 1.7653 44 1 2.7834 -8.1142 0.9824 45 1 2.9029 -6.3384 0.9767 46 1 1.5099 -10.6271 1.5832 47 1 4.1259 -2.1782 6.1268 48 1 3.7256 -0.1269 4.9155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894158217.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:45 Heat of formation + Delta-G solvation = 86.285665 kcal Electronic energy + Delta-G solvation = -26753.503946 eV Core-core repulsion = 23230.337266 eV Total energy + Delta-G solvation = -3523.166680 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.23489 -39.95184 -38.72193 -37.27232 -35.91449 -33.59754 -32.44368 -31.37090 -29.62843 -28.11237 -28.08567 -27.56541 -27.44114 -26.69491 -24.71521 -23.92556 -22.71273 -20.76951 -19.83379 -19.53207 -18.30476 -17.68964 -17.16625 -16.96314 -16.55739 -16.22416 -15.86942 -15.47056 -15.28389 -14.99820 -14.92835 -14.75096 -14.60875 -14.02460 -13.93438 -13.71238 -13.27274 -13.07881 -13.06238 -12.99351 -12.72668 -12.58002 -12.54328 -12.33110 -12.28243 -12.11568 -12.08939 -12.04145 -11.77175 -11.50369 -11.41417 -11.17130 -10.77512 -10.61899 -10.59694 -10.37466 -9.87364 -8.20732 -8.00544 -6.16194 -0.10382 0.09815 1.16487 1.44135 1.47359 1.55029 1.62258 2.14594 2.48824 2.62192 3.18447 3.23531 3.26088 3.54584 3.82563 3.99685 4.06995 4.30438 4.32519 4.37509 4.45311 4.57105 4.61901 4.68024 4.73614 4.81644 4.82988 4.91657 4.96538 5.02661 5.04550 5.05831 5.11123 5.11906 5.14837 5.21219 5.24752 5.43208 5.44924 5.46237 5.52824 5.67430 5.69180 5.77498 6.00524 6.14988 6.21972 6.33628 6.45366 6.53105 6.88824 7.15566 7.51674 8.98522 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018480 B = 0.003161 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.827912 B = 8854.711782 C = 9997.262156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.012 3.988 3 C -0.132 4.132 4 C -0.137 4.137 5 C 0.095 3.905 6 C -0.247 4.247 7 C 0.005 3.995 8 C 0.441 3.559 9 N -0.679 5.679 10 C 0.164 3.836 11 C 0.052 3.948 12 C -0.121 4.121 13 C -0.121 4.121 14 C -0.525 4.525 15 H 0.049 0.951 16 C 0.028 3.972 17 N -0.900 5.900 18 Si 0.945 3.055 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 N -0.570 5.570 23 C 0.087 3.913 24 C -0.039 4.039 25 N -0.249 5.249 26 N -0.315 5.315 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.167 0.833 37 H 0.414 0.586 38 H 0.046 0.954 39 H 0.045 0.955 40 H 0.031 0.969 41 H 0.062 0.938 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.062 0.938 45 H 0.031 0.969 46 H 0.259 0.741 47 H 0.210 0.790 48 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.382 19.771 -3.821 20.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.010 3.990 3 C -0.189 4.189 4 C -0.195 4.195 5 C -0.061 4.061 6 C -0.280 4.280 7 C -0.121 4.121 8 C 0.184 3.816 9 N -0.311 5.311 10 C 0.040 3.960 11 C 0.051 3.949 12 C -0.179 4.179 13 C -0.178 4.178 14 C -0.564 4.564 15 H 0.067 0.933 16 C -0.172 4.172 17 N -0.539 5.539 18 Si 0.771 3.229 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.198 1.198 22 N -0.297 5.297 23 C -0.054 4.054 24 C -0.167 4.167 25 N -0.019 5.019 26 N -0.143 5.143 27 H 0.065 0.935 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.185 0.815 37 H 0.253 0.747 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.081 0.919 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.081 0.919 45 H 0.050 0.950 46 H 0.069 0.931 47 H 0.226 0.774 48 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 0.125 20.019 -2.729 20.205 hybrid contribution -0.193 -1.283 -0.230 1.317 sum -0.068 18.737 -2.959 18.969 Atomic orbital electron populations 1.21860 0.91900 1.02710 1.02785 1.19234 0.96426 0.95062 0.88321 1.21762 1.00664 0.93893 1.02579 1.21890 1.00914 1.00883 0.95796 1.22602 0.95923 0.92470 0.95079 1.21348 1.13331 0.96796 0.96528 1.20004 1.07058 0.87716 0.97337 1.18254 0.89989 0.84778 0.88595 1.44785 1.63790 1.01930 1.20607 1.21302 0.98877 0.82107 0.93673 1.18363 0.92880 0.90767 0.92904 1.21675 0.97437 0.99844 0.98913 1.21671 0.97645 1.00073 0.98457 1.21268 1.41120 0.91562 1.02462 0.93277 1.25454 0.94869 1.01098 0.95780 1.69910 1.42890 1.24524 1.16600 0.85768 0.78380 0.79966 0.78742 1.20581 1.21094 1.19845 1.68005 1.21651 1.28862 1.11176 1.22430 0.97614 0.84265 1.01115 1.22484 1.06965 1.03452 0.83765 1.46320 1.38224 1.04555 1.12763 1.77682 1.26125 1.10141 1.00325 0.93501 0.89309 0.92177 0.93487 0.89851 0.93136 0.91794 0.89447 0.93212 0.81542 0.74662 0.93603 0.93633 0.94970 0.91933 0.96209 0.96193 0.91937 0.94971 0.93107 0.77354 0.78672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 8.46 71.98 0.61 -1.56 16 2 C 0.01 0.22 0.96 -52.93 -0.05 0.17 16 3 C -0.13 -2.26 8.02 71.98 0.58 -1.69 16 4 C -0.14 -2.15 8.19 71.98 0.59 -1.56 16 5 C 0.09 2.49 5.62 42.69 0.24 2.73 16 6 C -0.25 -6.90 9.87 22.43 0.22 -6.68 16 7 C 0.01 0.17 6.78 39.15 0.27 0.44 16 8 C 0.44 15.00 7.55 133.95 1.01 16.01 16 9 N -0.68 -23.63 5.10 -343.78 -1.75 -25.38 16 10 C 0.16 6.64 4.54 86.38 0.39 7.04 16 11 C 0.05 2.33 0.50 -52.93 -0.03 2.30 16 12 C -0.12 -5.34 8.08 71.98 0.58 -4.76 16 13 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 14 C -0.53 -27.12 8.01 25.60 0.21 -26.92 16 15 H 0.05 2.56 7.74 -2.91 -0.02 2.54 16 16 C 0.03 1.44 5.15 84.65 0.44 1.87 16 17 N -0.90 -47.64 9.35 21.45 0.20 -47.44 16 18 Si 0.94 41.98 29.54 68.60 2.03 44.01 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 22 N -0.57 -19.01 9.68 -193.36 -1.87 -20.88 16 23 C 0.09 2.20 11.05 83.60 0.92 3.12 16 24 C -0.04 -0.98 11.25 83.06 0.93 -0.04 16 25 N -0.25 -7.54 3.97 -187.21 -0.74 -8.28 16 26 N -0.32 -9.34 11.96 -47.78 -0.57 -9.91 16 27 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 28 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 0.97 8.07 -2.39 -0.02 0.95 16 33 H 0.06 1.01 7.48 -2.39 -0.02 0.99 16 34 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.17 3.98 7.66 -2.91 -0.02 3.95 16 37 H 0.41 13.39 5.94 -92.71 -0.55 12.84 16 38 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.03 1.21 6.86 -2.39 -0.02 1.19 16 41 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 42 H 0.02 0.85 8.14 -2.39 -0.02 0.84 16 43 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.06 3.08 6.07 -2.39 -0.01 3.06 16 45 H 0.03 1.21 6.86 -2.39 -0.02 1.19 16 46 H 0.26 13.26 8.31 -92.71 -0.77 12.49 16 47 H 0.21 3.49 8.06 -2.91 -0.02 3.46 16 48 H 0.20 3.39 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -61.01 379.76 5.17 -55.83 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 0.40 Total: 26.32 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: 7.49 Total: -14.26 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -4.74 Total: -111.89 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -61.01 5.17 -55.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894158217.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.118 kcal (2) G-P(sol) polarization free energy of solvation -61.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds