Wall clock time and date at job start Tue Mar 31 2020 12:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38242 * 119.69399 * 2 1 4 4 C 1.38412 * 118.84740 * 180.39130 * 3 2 1 5 5 C 1.50697 * 120.56738 * 180.02562 * 4 3 2 6 6 N 1.46904 * 109.46806 * 260.02059 * 5 4 3 7 7 C 1.46897 * 110.99827 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47022 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.47304 * 300.00074 * 8 7 6 10 10 C 1.52998 * 109.47191 * 60.00055 * 8 7 6 11 11 C 1.53008 * 109.47249 * 179.97438 * 8 7 6 12 12 C 1.50700 * 109.47183 * 179.97438 * 11 8 7 13 13 H 1.07996 * 119.99820 * 0.02562 * 12 11 8 14 14 C 1.37875 * 119.99877 * 179.97438 * 12 11 8 15 15 N 1.31510 * 120.00057 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 119.99953 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47152 * 90.00038 * 16 14 12 18 18 H 1.48500 * 109.47127 * 209.99744 * 16 14 12 19 19 H 1.48496 * 109.47087 * 330.00008 * 16 14 12 20 20 C 1.39191 * 118.86310 * 0.04079 * 4 3 2 21 21 C 1.37599 * 119.17966 * 359.77998 * 20 4 3 22 22 N 1.31514 * 119.70015 * 180.27182 * 2 1 3 23 23 C 1.50718 * 122.33896 * 180.48924 * 21 20 4 24 24 C 1.52723 * 110.57146 * 342.09350 * 23 21 20 25 25 C 1.53324 * 108.43808 * 51.30070 * 24 23 21 26 26 C 1.50497 * 117.97550 * 179.61616 * 20 4 3 27 27 H 1.09002 * 109.47271 * 269.72502 * 1 2 3 28 28 H 1.08998 * 109.47364 * 29.72367 * 1 2 3 29 29 H 1.09005 * 109.46616 * 149.72632 * 1 2 3 30 30 H 1.08004 * 120.57754 * 0.41496 * 3 2 1 31 31 H 1.08999 * 109.47580 * 20.01905 * 5 4 3 32 32 H 1.09000 * 109.47163 * 140.02378 * 5 4 3 33 33 H 1.00896 * 111.00185 * 56.04738 * 6 5 4 34 34 H 1.09000 * 109.47210 * 299.99924 * 7 6 5 35 35 H 1.09005 * 109.47306 * 60.00268 * 7 6 5 36 36 H 1.08998 * 109.47503 * 59.99718 * 9 8 7 37 37 H 1.09001 * 109.47295 * 180.02562 * 9 8 7 38 38 H 1.09005 * 109.47163 * 299.99737 * 9 8 7 39 39 H 1.09000 * 109.47085 * 59.99968 * 10 8 7 40 40 H 1.08997 * 109.47332 * 180.02562 * 10 8 7 41 41 H 1.09001 * 109.47240 * 300.00186 * 10 8 7 42 42 H 1.09000 * 109.47126 * 300.00093 * 11 8 7 43 43 H 1.08998 * 109.46800 * 60.00135 * 11 8 7 44 44 H 0.96998 * 120.00162 * 179.97438 * 15 14 12 45 45 H 1.09005 * 109.25476 * 102.37294 * 23 21 20 46 46 H 1.08999 * 109.25986 * 221.84735 * 23 21 20 47 47 H 1.09008 * 109.63949 * 170.98399 * 24 23 21 48 48 H 1.08997 * 109.64354 * 291.61563 * 24 23 21 49 49 H 1.09002 * 109.68718 * 49.86179 * 25 24 23 50 50 H 1.08996 * 109.69172 * 170.42763 * 25 24 23 51 51 H 1.08998 * 109.25644 * 42.35252 * 26 20 4 52 52 H 1.09001 * 109.22373 * 282.89056 * 26 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1917 1.2009 0.0000 4 6 3.5757 1.1805 -0.0083 5 6 4.3611 2.4665 -0.0080 6 7 4.8131 2.7645 -1.3737 7 6 5.5846 4.0140 -1.4120 8 6 6.0375 4.2899 -2.8471 9 6 6.9131 3.1347 -3.3366 10 6 4.8113 4.4196 -3.7529 11 6 6.8405 5.5917 -2.8872 12 6 7.2872 5.8631 -4.3007 13 1 7.0242 5.1761 -5.0913 14 6 8.0306 6.9890 -4.5845 15 7 8.4208 7.2256 -5.8179 16 14 8.4848 8.1777 -3.2169 17 1 9.7835 7.7735 -2.6208 18 1 8.6007 9.5501 -3.7721 19 1 7.4313 8.1543 -2.1706 20 6 4.2295 -0.0483 -0.0172 21 6 3.4840 -1.2049 -0.0129 22 7 2.1585 -1.1424 -0.0054 23 6 4.1176 -2.5724 -0.0111 24 6 5.5768 -2.4884 -0.4540 25 6 6.2769 -1.4124 0.3843 26 6 5.7343 -0.0472 -0.0350 27 1 -0.3634 -0.0049 1.0277 28 1 -0.3634 0.8924 -0.5095 29 1 -0.3633 -0.8876 -0.5181 30 1 1.6562 2.1388 0.0067 31 1 3.7287 3.2786 0.3506 32 1 5.2265 2.3636 0.6467 33 1 4.0332 2.8010 -2.0128 34 1 4.9609 4.8369 -1.0629 35 1 6.4585 3.9214 -0.7671 36 1 6.3407 2.2075 -3.3081 37 1 7.2362 3.3314 -4.3588 38 1 7.7868 3.0422 -2.6913 39 1 4.1875 5.2427 -3.4042 40 1 5.1340 4.6157 -4.7754 41 1 4.2388 3.4925 -3.7244 42 1 6.2163 6.4145 -2.5387 43 1 7.7141 5.4997 -2.2418 44 1 8.9435 8.0179 -6.0177 45 1 4.0708 -2.9889 0.9952 46 1 3.5718 -3.2225 -0.6949 47 1 6.0638 -3.4507 -0.2956 48 1 5.6245 -2.2194 -1.5092 49 1 6.0722 -1.5798 1.4418 50 1 7.3517 -1.4505 0.2074 51 1 6.1014 0.7128 0.6547 52 1 6.0812 0.1836 -1.0422 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894514534.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:22 Heat of formation + Delta-G solvation = -3.541487 kcal Electronic energy + Delta-G solvation = -26958.185269 eV Core-core repulsion = 23534.663735 eV Total energy + Delta-G solvation = -3423.521534 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.93988 -37.88018 -36.94113 -35.42825 -32.90849 -32.13185 -31.84826 -29.97221 -27.85626 -27.78810 -26.55114 -26.39339 -24.37898 -23.65773 -22.87365 -21.85767 -20.67451 -19.79624 -17.93372 -17.21193 -16.79858 -15.84087 -15.68305 -15.24110 -14.95236 -14.58942 -14.23019 -14.15916 -13.96868 -13.87620 -13.69913 -13.33904 -13.00402 -12.88993 -12.78906 -12.60423 -12.51987 -12.39040 -12.18396 -11.84362 -11.74900 -11.58625 -11.09563 -11.04788 -10.97347 -10.91742 -10.87920 -10.68607 -10.52318 -10.39126 -9.82169 -9.71876 -9.60808 -9.46421 -9.25628 -8.92213 -8.64309 -8.51083 -8.24392 -6.01167 -3.97462 1.03204 1.14040 3.30775 3.38619 3.41430 3.56309 3.99849 4.31839 4.41156 4.46877 4.60442 4.72523 4.75456 4.81886 4.89845 5.05869 5.14598 5.25189 5.30651 5.31864 5.35897 5.41630 5.47893 5.51327 5.55734 5.60830 5.64107 5.66252 5.71571 5.79286 5.83966 5.87678 5.93355 5.98902 6.10295 6.13304 6.19788 6.23245 6.36652 6.39656 6.56984 6.65183 6.66944 6.77369 7.04035 7.09571 7.15589 7.23275 7.30648 7.42417 7.54266 7.83928 7.94485 8.58497 9.04806 9.61870 11.11982 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018341 B = 0.002873 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.250057 B = 9744.477326 C =10481.587557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.125 3.875 3 C -0.171 4.171 4 C -0.035 4.035 5 C 0.094 3.906 6 N -0.677 5.677 7 C 0.068 3.932 8 C -0.048 4.048 9 C -0.117 4.117 10 C -0.131 4.131 11 C -0.004 4.004 12 C -0.507 4.507 13 H 0.078 0.922 14 C 0.065 3.935 15 N -0.905 5.905 16 Si 0.876 3.124 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.267 1.267 20 C -0.105 4.105 21 C 0.131 3.869 22 N -0.492 5.492 23 C -0.065 4.065 24 C -0.120 4.120 25 C -0.122 4.122 26 C -0.074 4.074 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.130 0.870 31 H 0.037 0.963 32 H 0.084 0.916 33 H 0.342 0.658 34 H 0.024 0.976 35 H 0.067 0.933 36 H 0.044 0.956 37 H 0.060 0.940 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.070 0.930 41 H 0.035 0.965 42 H 0.012 0.988 43 H 0.010 0.990 44 H 0.261 0.739 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.070 0.930 48 H 0.069 0.931 49 H 0.061 0.939 50 H 0.070 0.930 51 H 0.075 0.925 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.336 -17.260 14.878 25.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.015 4.015 3 C -0.192 4.192 4 C -0.044 4.044 5 C -0.035 4.035 6 N -0.309 5.309 7 C -0.061 4.061 8 C -0.048 4.048 9 C -0.174 4.174 10 C -0.188 4.188 11 C -0.042 4.042 12 C -0.545 4.545 13 H 0.096 0.904 14 C -0.136 4.136 15 N -0.545 5.545 16 Si 0.703 3.297 17 H -0.204 1.204 18 H -0.216 1.216 19 H -0.192 1.192 20 C -0.107 4.107 21 C -0.004 4.004 22 N -0.202 5.202 23 C -0.103 4.103 24 C -0.158 4.158 25 C -0.160 4.160 26 C -0.111 4.111 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.148 0.852 31 H 0.055 0.945 32 H 0.103 0.897 33 H 0.161 0.839 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.089 0.911 41 H 0.054 0.946 42 H 0.030 0.970 43 H 0.028 0.972 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.100 0.900 47 H 0.089 0.911 48 H 0.088 0.912 49 H 0.080 0.920 50 H 0.089 0.911 51 H 0.093 0.907 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.148 -18.288 14.819 26.045 hybrid contribution -0.005 2.409 0.803 2.539 sum -11.153 -15.879 15.623 24.912 Atomic orbital electron populations 1.20671 0.89048 1.03310 1.02791 1.21057 0.96702 0.88166 0.95586 1.21827 0.94185 0.99258 1.03913 1.20254 0.93255 0.95155 0.95698 1.20900 0.97768 0.92037 0.92798 1.60545 1.28068 1.36815 1.05446 1.22167 0.96694 0.88176 0.99041 1.20415 0.95715 0.97381 0.91323 1.21608 0.98066 0.96280 1.01482 1.21780 0.96664 0.98620 1.01729 1.19625 0.94506 0.91971 0.98054 1.21130 1.32573 1.08048 0.92755 0.90429 1.25016 0.95707 0.97737 0.95119 1.69905 1.38249 1.27748 1.18603 0.86849 0.79214 0.80635 0.82964 1.20431 1.21582 1.19215 1.20286 0.97321 0.92255 1.00836 1.20961 0.88658 0.94989 0.95779 1.67314 1.09567 1.29723 1.13589 1.20316 0.95308 0.92049 1.02583 1.21579 0.94282 0.99336 1.00571 1.21606 1.00059 0.94625 0.99687 1.20417 0.89794 0.97350 1.03534 0.90725 0.90839 0.90639 0.85229 0.94497 0.89747 0.83890 0.95777 0.91440 0.93704 0.92145 0.94209 0.94159 0.91131 0.94639 0.96980 0.97162 0.92877 0.90270 0.90034 0.91092 0.91217 0.91981 0.91116 0.90699 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.83 10.17 36.00 0.37 -0.46 16 2 C 0.12 1.42 6.78 -82.73 -0.56 0.86 16 3 C -0.17 -1.89 9.41 -39.52 -0.37 -2.26 16 4 C -0.04 -0.41 5.43 -104.21 -0.57 -0.98 16 5 C 0.09 1.07 5.20 -4.98 -0.03 1.04 16 6 N -0.68 -8.90 5.70 -115.06 -0.66 -9.56 16 7 C 0.07 1.05 4.65 -3.83 -0.02 1.03 16 8 C -0.05 -0.89 0.60 -154.51 -0.09 -0.99 16 9 C -0.12 -2.17 8.06 37.16 0.30 -1.88 16 10 C -0.13 -2.36 7.89 37.16 0.29 -2.06 16 11 C 0.00 -0.09 3.11 -27.88 -0.09 -0.17 16 12 C -0.51 -13.83 8.20 -34.44 -0.28 -14.12 16 13 H 0.08 2.27 5.92 -52.49 -0.31 1.95 16 14 C 0.06 1.85 5.47 -17.82 -0.10 1.76 16 15 N -0.91 -27.63 13.96 55.43 0.77 -26.85 16 16 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 20 C -0.10 -1.22 5.74 -104.60 -0.60 -1.82 16 21 C 0.13 1.57 6.62 -82.44 -0.55 1.02 16 22 N -0.49 -6.26 10.10 -5.78 -0.06 -6.32 16 23 C -0.06 -0.61 5.92 -28.02 -0.17 -0.77 16 24 C -0.12 -0.98 5.97 -26.71 -0.16 -1.14 16 25 C -0.12 -1.04 5.98 -26.68 -0.16 -1.20 16 26 C -0.07 -0.76 5.06 -28.10 -0.14 -0.90 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 31 H 0.04 0.40 8.04 -51.93 -0.42 -0.01 16 32 H 0.08 0.93 6.50 -51.93 -0.34 0.60 16 33 H 0.34 4.57 6.76 -39.29 -0.27 4.30 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 37 H 0.06 1.27 6.62 -51.93 -0.34 0.92 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.07 1.45 6.62 -51.93 -0.34 1.11 16 41 H 0.03 0.55 6.57 -51.93 -0.34 0.21 16 42 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 43 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 48 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 49 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 50 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 51 H 0.07 0.76 6.50 -51.93 -0.34 0.42 16 52 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 394.36 15.07 5.94 5.94 Total: -1.00 -30.27 394.36 -10.94 -41.22 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -9.36 Total: 1.71 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -2.92 Total: -23.06 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.06 Total: -42.73 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.27 -10.94 -41.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894514534.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.676 kcal (2) G-P(sol) polarization free energy of solvation -30.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds