Wall clock time and date at job start Tue Mar 31 2020 12:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38242 * 119.69399 * 2 1 4 4 C 1.38412 * 118.84740 * 180.39130 * 3 2 1 5 5 C 1.50697 * 120.56738 * 180.02562 * 4 3 2 6 6 N 1.46904 * 109.46806 * 260.02059 * 5 4 3 7 7 C 1.46897 * 110.99827 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47022 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.47304 * 300.00074 * 8 7 6 10 10 C 1.52998 * 109.47191 * 60.00055 * 8 7 6 11 11 C 1.53008 * 109.47249 * 179.97438 * 8 7 6 12 12 C 1.50700 * 109.47183 * 179.97438 * 11 8 7 13 13 H 1.07996 * 119.99820 * 0.02562 * 12 11 8 14 14 C 1.37875 * 119.99877 * 179.97438 * 12 11 8 15 15 N 1.31510 * 120.00057 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 119.99953 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47152 * 90.00038 * 16 14 12 18 18 H 1.48500 * 109.47127 * 209.99744 * 16 14 12 19 19 H 1.48496 * 109.47087 * 330.00008 * 16 14 12 20 20 C 1.39191 * 118.86310 * 0.04079 * 4 3 2 21 21 C 1.37599 * 119.17966 * 359.77998 * 20 4 3 22 22 N 1.31514 * 119.70015 * 180.27182 * 2 1 3 23 23 C 1.50718 * 122.33896 * 180.48924 * 21 20 4 24 24 C 1.52723 * 110.57146 * 342.09350 * 23 21 20 25 25 C 1.53324 * 108.43808 * 51.30070 * 24 23 21 26 26 C 1.50497 * 117.97550 * 179.61616 * 20 4 3 27 27 H 1.09002 * 109.47271 * 269.72502 * 1 2 3 28 28 H 1.08998 * 109.47364 * 29.72367 * 1 2 3 29 29 H 1.09005 * 109.46616 * 149.72632 * 1 2 3 30 30 H 1.08004 * 120.57754 * 0.41496 * 3 2 1 31 31 H 1.08999 * 109.47580 * 20.01905 * 5 4 3 32 32 H 1.09000 * 109.47163 * 140.02378 * 5 4 3 33 33 H 1.00896 * 111.00185 * 56.04738 * 6 5 4 34 34 H 1.09000 * 109.47210 * 299.99924 * 7 6 5 35 35 H 1.09005 * 109.47306 * 60.00268 * 7 6 5 36 36 H 1.08998 * 109.47503 * 59.99718 * 9 8 7 37 37 H 1.09001 * 109.47295 * 180.02562 * 9 8 7 38 38 H 1.09005 * 109.47163 * 299.99737 * 9 8 7 39 39 H 1.09000 * 109.47085 * 59.99968 * 10 8 7 40 40 H 1.08997 * 109.47332 * 180.02562 * 10 8 7 41 41 H 1.09001 * 109.47240 * 300.00186 * 10 8 7 42 42 H 1.09000 * 109.47126 * 300.00093 * 11 8 7 43 43 H 1.08998 * 109.46800 * 60.00135 * 11 8 7 44 44 H 0.96998 * 120.00162 * 179.97438 * 15 14 12 45 45 H 1.09005 * 109.25476 * 102.37294 * 23 21 20 46 46 H 1.08999 * 109.25986 * 221.84735 * 23 21 20 47 47 H 1.09008 * 109.63949 * 170.98399 * 24 23 21 48 48 H 1.08997 * 109.64354 * 291.61563 * 24 23 21 49 49 H 1.09002 * 109.68718 * 49.86179 * 25 24 23 50 50 H 1.08996 * 109.69172 * 170.42763 * 25 24 23 51 51 H 1.08998 * 109.25644 * 42.35252 * 26 20 4 52 52 H 1.09001 * 109.22373 * 282.89056 * 26 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1917 1.2009 0.0000 4 6 3.5757 1.1805 -0.0083 5 6 4.3611 2.4665 -0.0080 6 7 4.8131 2.7645 -1.3737 7 6 5.5846 4.0140 -1.4120 8 6 6.0375 4.2899 -2.8471 9 6 6.9131 3.1347 -3.3366 10 6 4.8113 4.4196 -3.7529 11 6 6.8405 5.5917 -2.8872 12 6 7.2872 5.8631 -4.3007 13 1 7.0242 5.1761 -5.0913 14 6 8.0306 6.9890 -4.5845 15 7 8.4208 7.2256 -5.8179 16 14 8.4848 8.1777 -3.2169 17 1 9.7835 7.7735 -2.6208 18 1 8.6007 9.5501 -3.7721 19 1 7.4313 8.1543 -2.1706 20 6 4.2295 -0.0483 -0.0172 21 6 3.4840 -1.2049 -0.0129 22 7 2.1585 -1.1424 -0.0054 23 6 4.1176 -2.5724 -0.0111 24 6 5.5768 -2.4884 -0.4540 25 6 6.2769 -1.4124 0.3843 26 6 5.7343 -0.0472 -0.0350 27 1 -0.3634 -0.0049 1.0277 28 1 -0.3634 0.8924 -0.5095 29 1 -0.3633 -0.8876 -0.5181 30 1 1.6562 2.1388 0.0067 31 1 3.7287 3.2786 0.3506 32 1 5.2265 2.3636 0.6467 33 1 4.0332 2.8010 -2.0128 34 1 4.9609 4.8369 -1.0629 35 1 6.4585 3.9214 -0.7671 36 1 6.3407 2.2075 -3.3081 37 1 7.2362 3.3314 -4.3588 38 1 7.7868 3.0422 -2.6913 39 1 4.1875 5.2427 -3.4042 40 1 5.1340 4.6157 -4.7754 41 1 4.2388 3.4925 -3.7244 42 1 6.2163 6.4145 -2.5387 43 1 7.7141 5.4997 -2.2418 44 1 8.9435 8.0179 -6.0177 45 1 4.0708 -2.9889 0.9952 46 1 3.5718 -3.2225 -0.6949 47 1 6.0638 -3.4507 -0.2956 48 1 5.6245 -2.2194 -1.5092 49 1 6.0722 -1.5798 1.4418 50 1 7.3517 -1.4505 0.2074 51 1 6.1014 0.7128 0.6547 52 1 6.0812 0.1836 -1.0422 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894514534.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:21 Heat of formation + Delta-G solvation = -19.757981 kcal Electronic energy + Delta-G solvation = -26958.888468 eV Core-core repulsion = 23534.663735 eV Total energy + Delta-G solvation = -3424.224734 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.75765 -39.25408 -37.67367 -36.58447 -34.59359 -33.33429 -32.82222 -30.77948 -29.67988 -28.50568 -27.92611 -27.69598 -25.74456 -24.43195 -23.67454 -23.51633 -21.53777 -20.52435 -19.46397 -18.86232 -18.06571 -16.72101 -16.59099 -16.37370 -16.21251 -15.88878 -15.43100 -15.26549 -14.94913 -14.82806 -14.69000 -14.53211 -14.41426 -14.05411 -13.77259 -13.71328 -13.54322 -13.48903 -13.20953 -13.04763 -12.79198 -12.73350 -12.63568 -12.38546 -12.30269 -12.23770 -12.06398 -11.74992 -11.69439 -11.63108 -11.39486 -11.35364 -11.03445 -10.84352 -10.69477 -10.38850 -10.27605 -9.46182 -9.29204 -8.21093 -6.21485 0.20261 0.27845 1.36609 1.38028 1.48893 2.40017 2.71117 3.14173 3.25764 3.34434 3.62016 3.75677 3.95601 4.01656 4.05188 4.10468 4.19342 4.20732 4.32271 4.32785 4.39892 4.50622 4.56391 4.68117 4.72805 4.74816 4.79403 4.79876 4.80362 4.88782 4.92936 4.93759 5.02780 5.04073 5.09199 5.10874 5.16150 5.19066 5.20780 5.30914 5.37177 5.38567 5.46099 5.48912 5.53051 5.56254 5.62524 5.75937 5.82350 5.86289 6.07327 6.41358 6.45441 6.86306 7.11036 7.41080 8.95305 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018341 B = 0.002873 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.250057 B = 9744.477326 C =10481.587557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.111 3.889 3 C -0.176 4.176 4 C -0.044 4.044 5 C 0.100 3.900 6 N -0.676 5.676 7 C 0.082 3.918 8 C -0.047 4.047 9 C -0.107 4.107 10 C -0.124 4.124 11 C -0.002 4.002 12 C -0.503 4.503 13 H 0.043 0.957 14 C 0.000 4.000 15 N -0.956 5.956 16 Si 0.942 3.058 17 H -0.270 1.270 18 H -0.290 1.290 19 H -0.247 1.247 20 C -0.117 4.117 21 C 0.116 3.884 22 N -0.514 5.514 23 C -0.063 4.063 24 C -0.115 4.115 25 C -0.119 4.119 26 C -0.069 4.069 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.148 0.852 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.342 0.658 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.024 0.976 38 H 0.040 0.960 39 H 0.045 0.955 40 H 0.034 0.966 41 H 0.062 0.938 42 H 0.013 0.987 43 H 0.013 0.987 44 H 0.262 0.738 45 H 0.088 0.912 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.058 0.942 49 H 0.067 0.933 50 H 0.080 0.920 51 H 0.076 0.924 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.176 -17.648 17.602 27.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.028 4.028 3 C -0.196 4.196 4 C -0.052 4.052 5 C -0.028 4.028 6 N -0.308 5.308 7 C -0.047 4.047 8 C -0.048 4.048 9 C -0.164 4.164 10 C -0.181 4.181 11 C -0.040 4.040 12 C -0.541 4.541 13 H 0.061 0.939 14 C -0.196 4.196 15 N -0.598 5.598 16 Si 0.766 3.234 17 H -0.196 1.196 18 H -0.216 1.216 19 H -0.171 1.171 20 C -0.119 4.119 21 C -0.019 4.019 22 N -0.225 5.225 23 C -0.101 4.101 24 C -0.153 4.153 25 C -0.157 4.157 26 C -0.107 4.107 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.166 0.834 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.161 0.839 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.044 0.956 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.080 0.920 42 H 0.032 0.968 43 H 0.032 0.968 44 H 0.071 0.929 45 H 0.106 0.894 46 H 0.098 0.902 47 H 0.109 0.891 48 H 0.077 0.923 49 H 0.086 0.914 50 H 0.098 0.902 51 H 0.095 0.905 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.002 -18.696 17.561 28.320 hybrid contribution 0.189 2.437 -0.105 2.447 sum -11.813 -16.259 17.456 26.619 Atomic orbital electron populations 1.20734 0.87120 1.03964 1.03718 1.21584 0.98165 0.88074 0.95023 1.22064 0.94141 0.99963 1.03414 1.20358 0.93663 0.95166 0.96034 1.20870 0.98149 0.92238 0.91575 1.60456 1.28224 1.35406 1.06736 1.21885 0.97321 0.89406 0.96124 1.20341 0.95305 0.95135 0.94001 1.21492 0.98437 0.97238 0.99266 1.21686 0.96785 1.00217 0.99426 1.19591 0.95148 0.94327 0.94943 1.21438 1.31455 1.06904 0.94323 0.93925 1.25938 0.96088 1.00022 0.97532 1.70068 1.39923 1.28743 1.21089 0.85786 0.79601 0.77869 0.80124 1.19580 1.21640 1.17104 1.20480 0.97990 0.92395 1.01017 1.21378 0.88734 0.96130 0.95675 1.67377 1.10102 1.30594 1.14426 1.20369 0.95787 0.90898 1.03061 1.21560 0.93695 1.00268 0.99778 1.21602 1.00509 0.93621 0.99955 1.20376 0.89107 0.98538 1.02669 0.89559 0.89214 0.90954 0.83397 0.93388 0.89258 0.83883 0.95168 0.91007 0.91784 0.95645 0.94043 0.93621 0.94695 0.91965 0.96822 0.96836 0.92934 0.89415 0.90217 0.89136 0.92291 0.91442 0.90185 0.90525 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 10.17 71.23 0.72 -0.71 16 2 C 0.11 2.36 6.78 42.61 0.29 2.65 16 3 C -0.18 -3.51 9.41 22.31 0.21 -3.30 16 4 C -0.04 -0.94 5.43 -19.59 -0.11 -1.04 16 5 C 0.10 2.00 5.20 85.56 0.45 2.45 16 6 N -0.68 -16.04 5.70 -517.93 -2.95 -18.99 16 7 C 0.08 2.29 4.65 86.30 0.40 2.69 16 8 C -0.05 -1.71 0.60 -52.18 -0.03 -1.74 16 9 C -0.11 -3.94 8.06 71.98 0.58 -3.35 16 10 C -0.12 -4.38 7.89 71.98 0.57 -3.81 16 11 C 0.00 -0.10 3.11 29.85 0.09 -0.01 16 12 C -0.50 -28.02 8.20 25.60 0.21 -27.81 16 13 H 0.04 2.62 5.92 -2.91 -0.02 2.60 16 14 C 0.00 -0.02 5.47 84.65 0.46 0.45 16 15 N -0.96 -60.12 13.96 21.45 0.30 -59.82 16 16 Si 0.94 44.26 27.47 68.60 1.88 46.15 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 19 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 20 C -0.12 -2.56 5.74 -19.85 -0.11 -2.68 16 21 C 0.12 2.64 6.62 42.28 0.28 2.92 16 22 N -0.51 -12.60 10.10 -172.19 -1.74 -14.34 16 23 C -0.06 -1.11 5.92 29.76 0.18 -0.94 16 24 C -0.12 -1.71 5.97 30.61 0.18 -1.53 16 25 C -0.12 -1.82 5.98 30.63 0.18 -1.63 16 26 C -0.07 -1.33 5.06 29.71 0.15 -1.18 16 27 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.09 0.99 8.08 -2.39 -0.02 0.97 16 29 H 0.07 1.09 8.14 -2.38 -0.02 1.08 16 30 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 31 H 0.05 0.88 8.04 -2.39 -0.02 0.86 16 32 H 0.09 1.72 6.50 -2.39 -0.02 1.71 16 33 H 0.34 8.20 6.76 -89.70 -0.61 7.60 16 34 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 36 H 0.06 2.08 7.60 -2.39 -0.02 2.06 16 37 H 0.02 1.08 6.62 -2.39 -0.02 1.06 16 38 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 39 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.03 1.46 6.62 -2.39 -0.02 1.45 16 41 H 0.06 1.84 6.57 -2.39 -0.02 1.82 16 42 H 0.01 0.61 7.20 -2.39 -0.02 0.59 16 43 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 44 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 45 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 46 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 48 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 49 H 0.07 0.96 8.10 -2.39 -0.02 0.94 16 50 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.08 1.42 6.50 -2.39 -0.02 1.40 16 52 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -66.61 394.36 2.42 -64.18 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.22 Total: 21.39 kcal Atomic # 6 Polarization: -43.27 SS G_CDS: 4.70 Total: -38.56 kcal Atomic # 7 Polarization: -88.76 SS G_CDS: -4.39 Total: -93.16 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.88 Total: 46.15 kcal Total: -66.61 2.42 -64.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894514534.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.427 kcal (2) G-P(sol) polarization free energy of solvation -66.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds