Wall clock time and date at job start Tue Mar 31 2020 11:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38117 * 120.40532 * 2 1 4 4 C 1.39617 * 118.33782 * 179.97438 * 3 2 1 5 5 N 1.38543 * 120.53294 * 179.97438 * 4 3 2 6 6 C 1.46956 * 111.00328 * 303.79855 * 5 4 3 7 7 C 1.53052 * 109.36695 * 176.80991 * 6 5 4 8 8 N 1.46950 * 109.36226 * 58.40250 * 7 6 5 9 9 C 1.46902 * 111.00072 * 176.81074 * 8 7 6 10 10 C 1.50700 * 109.46953 * 58.99504 * 9 8 7 11 11 H 1.07997 * 119.99928 * 4.98349 * 10 9 8 12 12 C 1.37872 * 119.99710 * 184.99250 * 10 9 8 13 13 N 1.31520 * 119.99946 * 179.97438 * 12 10 9 14 14 Si 1.86795 * 120.00568 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47073 * 90.00021 * 14 12 10 16 16 H 1.48497 * 109.47497 * 210.00513 * 14 12 10 17 17 H 1.48505 * 109.46934 * 330.00131 * 14 12 10 18 18 C 1.46959 * 110.88454 * 300.68105 * 8 7 6 19 19 C 1.46964 * 110.99851 * 180.02562 * 5 4 3 20 20 N 1.32998 * 118.93629 * 0.02562 * 4 3 2 21 21 C 1.31743 * 120.68751 * 359.97438 * 20 4 3 22 22 C 1.50701 * 119.08506 * 180.02562 * 21 20 4 23 23 C 1.53780 * 113.61421 * 217.49751 * 22 21 20 24 24 C 1.53775 * 87.08191 * 220.02015 * 23 22 21 25 25 C 1.53775 * 113.61548 * 120.00070 * 22 21 20 26 26 N 1.31794 * 121.83252 * 0.02562 * 21 20 4 27 27 H 1.09000 * 109.46844 * 270.02436 * 1 2 3 28 28 H 1.08997 * 109.47075 * 30.02189 * 1 2 3 29 29 H 1.08994 * 109.47478 * 150.02284 * 1 2 3 30 30 H 1.08003 * 120.83375 * 359.95983 * 3 2 1 31 31 H 1.09001 * 109.49007 * 296.78157 * 6 5 4 32 32 H 1.09004 * 109.48076 * 56.84692 * 6 5 4 33 33 H 1.09000 * 109.48896 * 298.44037 * 7 6 5 34 34 H 1.08995 * 109.48633 * 178.37254 * 7 6 5 35 35 H 1.08997 * 109.47265 * 178.99651 * 9 8 7 36 36 H 1.09000 * 109.47276 * 298.99679 * 9 8 7 37 37 H 0.96999 * 120.00392 * 179.97438 * 13 12 10 38 38 H 1.09001 * 109.48687 * 299.35205 * 18 8 7 39 39 H 1.09004 * 109.48609 * 179.28540 * 18 8 7 40 40 H 1.08995 * 109.49297 * 303.15488 * 19 5 4 41 41 H 1.08998 * 109.48844 * 63.20626 * 19 5 4 42 42 H 1.08999 * 112.84465 * 348.79873 * 22 21 20 43 43 H 1.09011 * 113.61100 * 334.56343 * 23 22 21 44 44 H 1.08996 * 113.61804 * 105.46711 * 23 22 21 45 45 H 1.09011 * 113.61225 * 270.88474 * 24 23 22 46 46 H 1.09001 * 113.61716 * 139.98150 * 24 23 22 47 47 H 1.09003 * 113.61225 * 254.52676 * 25 22 21 48 48 H 1.09003 * 113.62105 * 25.34784 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1912 0.0000 4 6 3.6012 1.1408 0.0005 5 7 4.3477 2.3080 0.0000 6 6 3.9890 3.1621 -1.1407 7 6 4.7759 4.4724 -1.0610 8 7 6.2154 4.1769 -1.0602 9 6 7.0069 5.4144 -1.0607 10 6 6.6605 6.2327 0.1564 11 1 5.9869 5.8348 0.9008 12 6 7.2035 7.4895 0.3194 13 7 6.9009 8.2039 1.3814 14 14 8.3691 8.1777 -0.9678 15 1 7.5919 8.9182 -1.9939 16 1 9.3356 9.0992 -0.3184 17 1 9.1064 7.0626 -1.6146 18 6 6.5743 3.3227 0.0805 19 6 5.7873 2.0124 0.0002 20 7 4.2023 -0.0456 0.0005 21 6 3.4956 -1.1574 0.0005 22 6 4.2140 -2.4821 0.0011 23 6 3.5253 -3.5567 -0.8567 24 6 3.8738 -4.5575 0.2577 25 6 3.8879 -3.3592 1.2213 26 7 2.1777 -1.1433 0.0000 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8901 -0.5134 30 1 1.6863 2.1380 -0.0007 31 1 4.2320 2.6480 -2.0706 32 1 2.9207 3.3772 -1.1121 33 1 4.5125 4.9996 -0.1440 34 1 4.5330 5.0954 -1.9217 35 1 8.0683 5.1669 -1.0422 36 1 6.7834 5.9884 -1.9601 37 1 7.2831 9.0879 1.4964 38 1 6.3313 3.8369 1.0104 39 1 7.6425 3.1076 0.0519 40 1 6.0306 1.3892 0.8606 41 1 6.0504 1.4852 -0.9168 42 1 5.2820 -2.3844 -0.1937 43 1 2.4541 -3.3964 -0.9802 44 1 4.0357 -3.7569 -1.7987 45 1 4.8489 -5.0285 0.1323 46 1 3.0795 -5.2748 0.4644 47 1 4.6912 -3.3999 1.9569 48 1 2.9166 -3.1440 1.6668 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895028069.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:55 Heat of formation + Delta-G solvation = 85.022545 kcal Electronic energy + Delta-G solvation = -26593.088872 eV Core-core repulsion = 23069.867420 eV Total energy + Delta-G solvation = -3523.221453 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.38518 -39.24227 -38.28021 -35.77604 -34.00462 -32.55348 -31.43972 -30.66590 -28.91536 -27.97080 -26.75238 -25.79050 -25.27631 -23.36553 -22.35769 -21.98868 -21.26867 -19.65657 -19.17684 -17.53324 -17.11020 -16.82754 -15.91758 -15.47769 -15.33173 -15.16952 -14.65338 -14.41518 -14.34387 -14.19570 -13.78268 -13.47176 -13.25602 -12.86981 -12.72096 -12.59803 -12.51745 -12.38786 -12.20792 -12.13100 -11.40254 -11.24058 -11.14680 -10.92251 -10.79590 -10.72129 -10.64485 -10.55802 -10.42631 -10.35797 -10.17159 -9.98785 -9.55571 -9.52725 -9.19578 -8.63456 -8.31116 -7.31417 -6.14248 -4.14851 0.96099 1.14569 3.24394 3.32679 3.36174 3.39791 3.71231 3.85509 4.10048 4.35845 4.46127 4.52691 4.69583 4.75086 4.79331 4.84302 5.03361 5.15688 5.18480 5.22234 5.34032 5.35985 5.43752 5.46356 5.50781 5.61374 5.64501 5.67442 5.68137 5.71778 5.74373 5.77282 5.89291 5.92729 5.97015 6.14970 6.24929 6.34284 6.45772 6.59505 6.71514 6.74239 6.88527 7.00469 7.15749 7.27693 7.49179 7.94333 7.97097 8.23398 8.39711 8.88404 9.48057 10.98514 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.023146 B = 0.002798 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.419531 B =10004.186951 C =10678.142742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.187 3.813 3 C -0.253 4.253 4 C 0.369 3.631 5 N -0.470 5.470 6 C 0.067 3.933 7 C 0.061 3.939 8 N -0.537 5.537 9 C 0.155 3.845 10 C -0.553 4.553 11 H 0.077 0.923 12 C 0.073 3.927 13 N -0.897 5.897 14 Si 0.879 3.121 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.264 1.264 18 C 0.057 3.943 19 C 0.072 3.928 20 N -0.557 5.557 21 C 0.356 3.644 22 C -0.049 4.049 23 C -0.122 4.122 24 C -0.139 4.139 25 C -0.121 4.121 26 N -0.543 5.543 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.145 0.855 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.029 0.971 36 H 0.027 0.973 37 H 0.264 0.736 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.055 0.945 42 H 0.112 0.888 43 H 0.095 0.905 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.403 -21.261 -4.168 24.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.044 3.956 3 C -0.279 4.279 4 C 0.129 3.871 5 N -0.186 5.186 6 C -0.059 4.059 7 C -0.068 4.068 8 N -0.261 5.261 9 C 0.029 3.971 10 C -0.592 4.592 11 H 0.095 0.905 12 C -0.130 4.130 13 N -0.535 5.535 14 Si 0.706 3.294 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.189 1.189 18 C -0.072 4.072 19 C -0.054 4.054 20 N -0.278 5.278 21 C 0.087 3.913 22 C -0.069 4.069 23 C -0.161 4.161 24 C -0.177 4.177 25 C -0.160 4.160 26 N -0.261 5.261 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.162 0.838 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.047 0.953 36 H 0.045 0.955 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.073 0.927 42 H 0.130 0.870 43 H 0.114 0.886 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.852 -21.801 -4.106 24.274 hybrid contribution 0.262 1.730 -0.215 1.763 sum -9.590 -20.071 -4.321 22.660 Atomic orbital electron populations 1.20726 0.88041 1.03741 1.03475 1.21432 0.97187 0.87730 0.89291 1.22152 0.93988 1.00745 1.10997 1.20246 0.90482 0.88764 0.87597 1.58990 1.07733 1.11181 1.40722 1.22454 1.00260 0.94110 0.89075 1.22004 0.88796 0.93361 1.02645 1.62654 1.04140 1.18595 1.40734 1.20158 0.93504 0.86763 0.96704 1.21680 1.29667 1.00978 1.06864 0.90550 1.24973 0.95956 0.96757 0.95330 1.69929 1.44215 1.11603 1.27795 0.86794 0.81332 0.79341 0.81911 1.20194 1.21297 1.18878 1.22080 0.98607 0.91835 0.94640 1.22181 0.83307 0.97763 1.02197 1.68247 1.41608 0.98025 1.19945 1.22687 0.86440 0.93229 0.88920 1.21432 0.99435 0.86752 0.99304 1.22927 1.01928 0.94249 0.96969 1.22792 1.01888 0.96397 0.96601 1.22883 1.02486 0.94983 0.95624 1.67914 1.09396 1.29957 1.18862 0.89889 0.90267 0.90169 0.83755 0.93185 0.90055 0.92091 0.90406 0.95303 0.95541 0.92639 0.92725 0.90602 0.89951 0.92704 0.87007 0.88618 0.91481 0.90080 0.91129 0.91196 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 10.21 36.00 0.37 -0.46 16 2 C 0.19 2.26 6.82 -82.33 -0.56 1.69 16 3 C -0.25 -3.34 8.98 -39.11 -0.35 -3.69 16 4 C 0.37 5.72 6.41 -154.77 -0.99 4.72 16 5 N -0.47 -7.73 4.74 -172.85 -0.82 -8.55 16 6 C 0.07 1.03 5.37 -3.77 -0.02 1.01 16 7 C 0.06 1.13 5.24 -3.77 -0.02 1.11 16 8 N -0.54 -10.96 4.92 -235.91 -1.16 -12.12 16 9 C 0.16 3.64 4.21 -4.97 -0.02 3.62 16 10 C -0.55 -15.07 8.21 -34.44 -0.28 -15.35 16 11 H 0.08 2.28 6.07 -52.49 -0.32 1.96 16 12 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 13 N -0.90 -27.03 13.96 55.43 0.77 -26.25 16 14 Si 0.88 21.09 27.37 -169.99 -4.65 16.43 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.26 -6.11 6.69 56.52 0.38 -5.73 16 18 C 0.06 1.10 5.32 -3.76 -0.02 1.08 16 19 C 0.07 1.22 4.80 -3.76 -0.02 1.20 16 20 N -0.56 -8.63 8.77 -9.96 -0.09 -8.72 16 21 C 0.36 4.89 6.88 -157.24 -1.08 3.81 16 22 C -0.05 -0.53 4.16 -90.96 -0.38 -0.91 16 23 C -0.12 -1.10 7.56 -25.92 -0.20 -1.30 16 24 C -0.14 -1.05 8.08 -25.92 -0.21 -1.26 16 25 C -0.12 -1.12 7.60 -25.92 -0.20 -1.32 16 26 N -0.54 -7.10 9.22 -7.07 -0.07 -7.16 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.14 1.65 7.26 -52.48 -0.38 1.27 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.07 6.86 -51.93 -0.36 0.71 16 33 H 0.06 1.31 6.62 -51.93 -0.34 0.96 16 34 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.03 0.69 7.52 -51.93 -0.39 0.30 16 36 H 0.03 0.62 7.30 -51.93 -0.38 0.24 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.05 1.20 6.78 -51.93 -0.35 0.85 16 39 H 0.08 1.40 8.12 -51.93 -0.42 0.98 16 40 H 0.08 1.36 7.84 -51.93 -0.41 0.96 16 41 H 0.05 0.93 8.06 -51.93 -0.42 0.51 16 42 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.10 0.94 7.41 -51.92 -0.38 0.56 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.09 0.88 8.00 -51.93 -0.42 0.46 16 LS Contribution 372.71 15.07 5.62 5.62 Total: -1.00 -30.84 372.71 -12.42 -43.27 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.95 Total: 1.56 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -4.08 Total: -4.08 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: -1.36 Total: -62.80 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.65 Total: 16.43 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.84 -12.42 -43.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895028069.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.292 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds