Wall clock time and date at job start Tue Mar 31 2020 11:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38117 * 120.40532 * 2 1 4 4 C 1.39617 * 118.33782 * 179.97438 * 3 2 1 5 5 N 1.38543 * 120.53294 * 179.97438 * 4 3 2 6 6 C 1.46956 * 111.00328 * 303.79855 * 5 4 3 7 7 C 1.53052 * 109.36695 * 176.80991 * 6 5 4 8 8 N 1.46950 * 109.36226 * 58.40250 * 7 6 5 9 9 C 1.46902 * 111.00072 * 176.81074 * 8 7 6 10 10 C 1.50700 * 109.46953 * 58.99504 * 9 8 7 11 11 H 1.07997 * 119.99928 * 4.98349 * 10 9 8 12 12 C 1.37872 * 119.99710 * 184.99250 * 10 9 8 13 13 N 1.31520 * 119.99946 * 179.97438 * 12 10 9 14 14 Si 1.86795 * 120.00568 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47073 * 90.00021 * 14 12 10 16 16 H 1.48497 * 109.47497 * 210.00513 * 14 12 10 17 17 H 1.48505 * 109.46934 * 330.00131 * 14 12 10 18 18 C 1.46959 * 110.88454 * 300.68105 * 8 7 6 19 19 C 1.46964 * 110.99851 * 180.02562 * 5 4 3 20 20 N 1.32998 * 118.93629 * 0.02562 * 4 3 2 21 21 C 1.31743 * 120.68751 * 359.97438 * 20 4 3 22 22 C 1.50701 * 119.08506 * 180.02562 * 21 20 4 23 23 C 1.53780 * 113.61421 * 217.49751 * 22 21 20 24 24 C 1.53775 * 87.08191 * 220.02015 * 23 22 21 25 25 C 1.53775 * 113.61548 * 120.00070 * 22 21 20 26 26 N 1.31794 * 121.83252 * 0.02562 * 21 20 4 27 27 H 1.09000 * 109.46844 * 270.02436 * 1 2 3 28 28 H 1.08997 * 109.47075 * 30.02189 * 1 2 3 29 29 H 1.08994 * 109.47478 * 150.02284 * 1 2 3 30 30 H 1.08003 * 120.83375 * 359.95983 * 3 2 1 31 31 H 1.09001 * 109.49007 * 296.78157 * 6 5 4 32 32 H 1.09004 * 109.48076 * 56.84692 * 6 5 4 33 33 H 1.09000 * 109.48896 * 298.44037 * 7 6 5 34 34 H 1.08995 * 109.48633 * 178.37254 * 7 6 5 35 35 H 1.08997 * 109.47265 * 178.99651 * 9 8 7 36 36 H 1.09000 * 109.47276 * 298.99679 * 9 8 7 37 37 H 0.96999 * 120.00392 * 179.97438 * 13 12 10 38 38 H 1.09001 * 109.48687 * 299.35205 * 18 8 7 39 39 H 1.09004 * 109.48609 * 179.28540 * 18 8 7 40 40 H 1.08995 * 109.49297 * 303.15488 * 19 5 4 41 41 H 1.08998 * 109.48844 * 63.20626 * 19 5 4 42 42 H 1.08999 * 112.84465 * 348.79873 * 22 21 20 43 43 H 1.09011 * 113.61100 * 334.56343 * 23 22 21 44 44 H 1.08996 * 113.61804 * 105.46711 * 23 22 21 45 45 H 1.09011 * 113.61225 * 270.88474 * 24 23 22 46 46 H 1.09001 * 113.61716 * 139.98150 * 24 23 22 47 47 H 1.09003 * 113.61225 * 254.52676 * 25 22 21 48 48 H 1.09003 * 113.62105 * 25.34784 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1912 0.0000 4 6 3.6012 1.1408 0.0005 5 7 4.3477 2.3080 0.0000 6 6 3.9890 3.1621 -1.1407 7 6 4.7759 4.4724 -1.0610 8 7 6.2154 4.1769 -1.0602 9 6 7.0069 5.4144 -1.0607 10 6 6.6605 6.2327 0.1564 11 1 5.9869 5.8348 0.9008 12 6 7.2035 7.4895 0.3194 13 7 6.9009 8.2039 1.3814 14 14 8.3691 8.1777 -0.9678 15 1 7.5919 8.9182 -1.9939 16 1 9.3356 9.0992 -0.3184 17 1 9.1064 7.0626 -1.6146 18 6 6.5743 3.3227 0.0805 19 6 5.7873 2.0124 0.0002 20 7 4.2023 -0.0456 0.0005 21 6 3.4956 -1.1574 0.0005 22 6 4.2140 -2.4821 0.0011 23 6 3.5253 -3.5567 -0.8567 24 6 3.8738 -4.5575 0.2577 25 6 3.8879 -3.3592 1.2213 26 7 2.1777 -1.1433 0.0000 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8901 -0.5134 30 1 1.6863 2.1380 -0.0007 31 1 4.2320 2.6480 -2.0706 32 1 2.9207 3.3772 -1.1121 33 1 4.5125 4.9996 -0.1440 34 1 4.5330 5.0954 -1.9217 35 1 8.0683 5.1669 -1.0422 36 1 6.7834 5.9884 -1.9601 37 1 7.2831 9.0879 1.4964 38 1 6.3313 3.8369 1.0104 39 1 7.6425 3.1076 0.0519 40 1 6.0306 1.3892 0.8606 41 1 6.0504 1.4852 -0.9168 42 1 5.2820 -2.3844 -0.1937 43 1 2.4541 -3.3964 -0.9802 44 1 4.0357 -3.7569 -1.7987 45 1 4.8489 -5.0285 0.1323 46 1 3.0795 -5.2748 0.4644 47 1 4.6912 -3.3999 1.9569 48 1 2.9166 -3.1440 1.6668 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895028069.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:54 Heat of formation + Delta-G solvation = 65.706417 kcal Electronic energy + Delta-G solvation = -26593.926482 eV Core-core repulsion = 23069.867420 eV Total energy + Delta-G solvation = -3524.059063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.43524 -40.46392 -39.22664 -37.23295 -35.08444 -34.48970 -32.70856 -32.07751 -30.25171 -29.23162 -27.63630 -26.94053 -26.50099 -24.69108 -23.81516 -23.02244 -22.68395 -20.95512 -20.27848 -18.97747 -18.53372 -18.18030 -16.92553 -16.53116 -16.51446 -16.33636 -16.03761 -15.92722 -15.83937 -15.58141 -15.08548 -14.56343 -14.47231 -14.25761 -13.98929 -13.76483 -13.48060 -13.33226 -13.19420 -13.13549 -13.00104 -12.82610 -12.45236 -12.28762 -12.23661 -12.13117 -11.90091 -11.79447 -11.67263 -11.60214 -11.49246 -11.32806 -11.20727 -10.79619 -10.56341 -10.25421 -9.49309 -9.09749 -8.32052 -6.37922 -0.06012 0.09931 1.35799 1.37665 1.49480 2.25982 2.33414 2.69373 2.93144 3.02960 3.12619 3.20153 3.67072 3.73463 3.82062 3.87649 3.98916 4.02273 4.03244 4.14067 4.16966 4.30279 4.36345 4.38944 4.52956 4.57476 4.72971 4.75154 4.76119 4.82673 4.83035 4.90155 4.92756 4.95009 5.01891 5.04141 5.06720 5.08313 5.12754 5.13662 5.24785 5.37249 5.46901 5.48727 5.62701 5.92055 6.07542 6.19120 6.28595 6.28921 6.68892 7.19596 7.29032 8.84196 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.023146 B = 0.002798 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.419531 B =10004.186951 C =10678.142742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.186 3.814 3 C -0.258 4.258 4 C 0.349 3.651 5 N -0.485 5.485 6 C 0.078 3.922 7 C 0.063 3.937 8 N -0.532 5.532 9 C 0.162 3.838 10 C -0.550 4.550 11 H 0.034 0.966 12 C 0.011 3.989 13 N -0.948 5.948 14 Si 0.951 3.049 15 H -0.265 1.265 16 H -0.287 1.287 17 H -0.246 1.246 18 C 0.063 3.937 19 C 0.089 3.911 20 N -0.579 5.579 21 C 0.345 3.655 22 C -0.059 4.059 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.120 4.120 26 N -0.545 5.545 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.161 0.839 31 H 0.056 0.944 32 H 0.108 0.892 33 H 0.025 0.975 34 H 0.088 0.912 35 H 0.031 0.969 36 H 0.036 0.964 37 H 0.266 0.734 38 H 0.018 0.982 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.057 0.943 42 H 0.110 0.890 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.095 0.905 46 H 0.082 0.918 47 H 0.073 0.927 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.085 -22.965 -6.083 26.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.042 3.958 3 C -0.283 4.283 4 C 0.110 3.890 5 N -0.202 5.202 6 C -0.048 4.048 7 C -0.066 4.066 8 N -0.255 5.255 9 C 0.034 3.966 10 C -0.589 4.589 11 H 0.052 0.948 12 C -0.187 4.187 13 N -0.588 5.588 14 Si 0.774 3.226 15 H -0.190 1.190 16 H -0.212 1.212 17 H -0.169 1.169 18 C -0.066 4.066 19 C -0.037 4.037 20 N -0.301 5.301 21 C 0.076 3.924 22 C -0.080 4.080 23 C -0.156 4.156 24 C -0.162 4.162 25 C -0.159 4.159 26 N -0.263 5.263 27 H 0.113 0.887 28 H 0.117 0.883 29 H 0.106 0.894 30 H 0.178 0.822 31 H 0.074 0.926 32 H 0.126 0.874 33 H 0.043 0.957 34 H 0.106 0.894 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.036 0.964 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.128 0.872 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.113 0.887 46 H 0.100 0.900 47 H 0.092 0.908 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.552 -23.543 -6.030 26.495 hybrid contribution 0.365 2.181 0.465 2.259 sum -10.188 -21.362 -5.565 24.312 Atomic orbital electron populations 1.20846 0.84982 1.05126 1.04609 1.22117 0.99086 0.87007 0.87582 1.22373 0.93081 1.02027 1.10814 1.20354 0.91341 0.88399 0.88939 1.59017 1.07326 1.12302 1.41550 1.22363 1.01101 0.92175 0.89131 1.22009 0.88052 0.95266 1.01240 1.62682 1.04972 1.17102 1.40778 1.20034 0.94038 0.87485 0.94997 1.21869 1.28358 1.01396 1.07251 0.94776 1.25932 0.97959 0.97173 0.97641 1.70086 1.46152 1.12259 1.30289 0.85659 0.78969 0.78963 0.79020 1.18970 1.21249 1.16925 1.22034 0.99491 0.92526 0.92558 1.21908 0.83823 0.95844 1.02174 1.68226 1.42446 0.98517 1.20878 1.23260 0.86997 0.93689 0.88415 1.21643 0.99320 0.86023 1.00976 1.22890 1.01226 0.93867 0.97596 1.22759 1.03047 0.95729 0.94672 1.22867 1.01986 0.95532 0.95481 1.68039 1.09121 1.30405 1.18768 0.88655 0.88310 0.89368 0.82153 0.92579 0.87421 0.95691 0.89350 0.95114 0.94593 0.92521 0.96378 0.90044 0.90019 0.92517 0.87182 0.89464 0.90707 0.88659 0.89972 0.90831 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.31 10.21 71.23 0.73 -0.58 16 2 C 0.19 4.15 6.82 42.42 0.29 4.44 16 3 C -0.26 -6.44 8.98 22.57 0.20 -6.24 16 4 C 0.35 10.62 6.41 133.16 0.85 11.47 16 5 N -0.48 -15.98 4.74 -700.79 -3.32 -19.30 16 6 C 0.08 2.34 5.37 86.31 0.46 2.80 16 7 C 0.06 2.37 5.24 86.31 0.45 2.82 16 8 N -0.53 -21.76 4.92 -900.27 -4.43 -26.19 16 9 C 0.16 7.55 4.21 85.56 0.36 7.91 16 10 C -0.55 -30.88 8.21 25.60 0.21 -30.67 16 11 H 0.03 2.16 6.07 -2.91 -0.02 2.15 16 12 C 0.01 0.63 5.47 84.65 0.46 1.09 16 13 N -0.95 -58.90 13.96 21.45 0.30 -58.60 16 14 Si 0.95 43.32 27.37 68.60 1.88 45.20 16 15 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 16 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 17 H -0.25 -10.39 6.69 99.48 0.67 -9.73 16 18 C 0.06 2.49 5.32 86.31 0.46 2.95 16 19 C 0.09 3.05 4.80 86.31 0.41 3.47 16 20 N -0.58 -17.78 8.77 -185.44 -1.63 -19.41 16 21 C 0.35 9.25 6.88 138.77 0.96 10.20 16 22 C -0.06 -1.23 4.16 -11.02 -0.05 -1.28 16 23 C -0.12 -1.92 7.56 31.12 0.24 -1.69 16 24 C -0.12 -1.60 8.08 31.12 0.25 -1.35 16 25 C -0.12 -2.08 7.60 31.12 0.24 -1.84 16 26 N -0.55 -13.57 9.22 -176.28 -1.63 -15.19 16 27 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.10 0.95 8.09 -2.39 -0.02 0.93 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 30 H 0.16 3.35 7.26 -2.91 -0.02 3.33 16 31 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.11 2.66 6.86 -2.39 -0.02 2.64 16 33 H 0.02 1.12 6.62 -2.39 -0.02 1.10 16 34 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 35 H 0.03 1.43 7.52 -2.39 -0.02 1.41 16 36 H 0.04 1.62 7.30 -2.39 -0.02 1.61 16 37 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 38 H 0.02 0.84 6.78 -2.39 -0.02 0.83 16 39 H 0.08 3.07 8.12 -2.39 -0.02 3.05 16 40 H 0.08 2.77 7.84 -2.39 -0.02 2.76 16 41 H 0.06 1.91 8.06 -2.39 -0.02 1.89 16 42 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.09 1.59 7.41 -2.38 -0.02 1.57 16 44 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 46 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.08 1.48 8.00 -2.39 -0.02 1.46 16 Total: -1.00 -68.86 372.71 -1.39 -70.25 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.90 Total: 19.73 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 6.53 Total: 3.51 kcal Atomic # 7 Polarization: -127.99 SS G_CDS: -10.70 Total: -138.69 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.20 kcal Total: -68.86 -1.39 -70.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895028069.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.959 kcal (2) G-P(sol) polarization free energy of solvation -68.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds