Wall clock time and date at job start Tue Mar 31 2020 11:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47169 * 108.13580 * 3 2 1 5 5 C 1.52999 * 109.47502 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47525 * 179.97438 * 5 4 3 7 7 N 1.30293 * 126.34223 * 90.02439 * 6 5 4 8 8 N 1.28535 * 110.05039 * 180.02562 * 7 6 5 9 9 C 1.31217 * 109.85888 * 0.02562 * 8 7 6 10 10 N 1.38586 * 126.46954 * 179.97438 * 9 8 7 11 11 C 1.46844 * 111.00463 * 273.26869 * 10 9 8 12 12 C 1.53034 * 109.52384 * 185.84206 * 11 10 9 13 13 C 1.53121 * 109.27769 * 300.81700 * 12 11 10 14 14 C 1.53118 * 109.15907 * 57.65874 * 13 12 11 15 15 H 1.09001 * 109.50365 * 62.28327 * 14 13 12 16 16 C 1.50701 * 109.50022 * 182.40574 * 14 13 12 17 17 H 1.07999 * 120.00105 * 119.80637 * 16 14 13 18 18 C 1.37874 * 119.99836 * 299.79658 * 16 14 13 19 19 N 1.31513 * 119.99847 * 180.02562 * 18 16 14 20 20 Si 1.86800 * 120.00228 * 0.02562 * 18 16 14 21 21 H 1.48502 * 109.47072 * 89.99829 * 20 18 16 22 22 H 1.48497 * 109.47174 * 209.99778 * 20 18 16 23 23 H 1.48507 * 109.46859 * 329.99828 * 20 18 16 24 24 C 1.46843 * 110.99792 * 37.48057 * 10 9 8 25 25 N 1.36445 * 107.05403 * 359.73691 * 9 8 7 26 26 C 1.46504 * 127.13537 * 180.26440 * 25 9 8 27 27 C 1.52997 * 109.47337 * 269.80660 * 26 25 9 28 28 H 4.44644 * 5.63407 * 180.02562 * 4 1 2 29 29 H 1.09012 * 109.46743 * 228.13047 * 3 2 1 30 30 H 1.08993 * 109.47683 * 348.12780 * 3 2 1 31 31 H 1.08999 * 109.47142 * 299.99379 * 4 3 2 32 32 H 1.09002 * 109.47628 * 59.99278 * 4 3 2 33 33 H 1.08996 * 109.47282 * 299.99970 * 5 4 3 34 34 H 1.08999 * 109.46622 * 59.99739 * 5 4 3 35 35 H 1.09005 * 109.45912 * 305.85367 * 11 10 9 36 36 H 1.08994 * 109.46053 * 65.82032 * 11 10 9 37 37 H 1.09007 * 109.50146 * 180.87849 * 12 11 10 38 38 H 1.08998 * 109.53765 * 60.77826 * 12 11 10 39 39 H 1.08998 * 109.52262 * 297.75215 * 13 12 11 40 40 H 1.08996 * 109.57073 * 177.59077 * 13 12 11 41 41 H 0.96999 * 120.00046 * 180.02562 * 19 18 16 42 42 H 1.08996 * 109.46582 * 294.17070 * 24 10 9 43 43 H 1.08998 * 109.46830 * 54.15495 * 24 10 9 44 44 H 1.09000 * 109.47352 * 29.81141 * 26 25 9 45 45 H 1.09003 * 109.46948 * 149.80831 * 26 25 9 46 46 H 1.08995 * 109.47686 * 185.75914 * 27 26 25 47 47 H 1.09008 * 109.47209 * 305.76570 * 27 26 25 48 48 H 1.09003 * 109.47381 * 65.75796 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.4499 -1.3708 5 6 4.6858 0.4512 -1.3707 6 6 5.1879 0.8931 -2.7211 7 7 5.4447 2.1170 -3.0867 8 7 5.8555 2.1361 -4.3045 9 6 5.8824 0.9153 -4.7851 10 7 6.2692 0.5411 -6.0622 11 6 5.1395 0.6156 -6.9974 12 6 5.5645 0.0592 -8.3581 13 6 6.7466 0.8739 -8.8906 14 6 7.8920 0.8196 -7.8759 15 1 8.2255 -0.2114 -7.7583 16 6 9.0379 1.6674 -8.3650 17 1 9.3812 2.5040 -7.7745 18 6 9.6482 1.3750 -9.5662 19 7 10.6485 2.1145 -9.9928 20 14 9.0542 -0.0717 -10.5878 21 1 7.9934 0.3842 -11.5218 22 1 10.1907 -0.6295 -11.3639 23 1 8.5061 -1.1199 -9.6899 24 6 7.3995 1.3540 -6.5290 25 7 5.4627 0.0836 -3.7882 26 6 5.3310 -1.3743 -3.8495 27 6 3.9221 -1.7397 -4.3209 28 1 -1.0501 0.0002 0.0001 29 1 3.0090 0.6868 0.7654 30 1 3.0098 -1.0048 0.2114 31 1 2.7928 -0.2362 -2.1361 32 1 2.7919 1.4554 -1.5822 33 1 5.0485 1.1374 -0.6055 34 1 5.0499 -0.5542 -1.1592 35 1 4.3072 0.0287 -6.6089 36 1 4.8296 1.6545 -7.1104 37 1 4.7304 0.1290 -9.0564 38 1 5.8613 -0.9839 -8.2488 39 1 6.4388 1.9091 -9.0375 40 1 7.0807 0.4549 -9.8397 41 1 11.0776 1.9090 -10.8381 42 1 7.0791 2.3894 -6.6444 43 1 8.2088 1.3033 -5.8006 44 1 6.0639 -1.7762 -4.5491 45 1 5.5039 -1.7966 -2.8596 46 1 3.7904 -2.8205 -4.2690 47 1 3.1868 -1.2529 -3.6801 48 1 3.7850 -1.4061 -5.3495 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908879615.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:42 Heat of formation + Delta-G solvation = 125.963358 kcal Electronic energy + Delta-G solvation = -26817.563137 eV Core-core repulsion = 23296.117012 eV Total energy + Delta-G solvation = -3521.446126 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.87021 -38.61105 -36.57576 -35.61143 -34.08982 -32.96202 -32.08553 -30.68737 -30.44385 -29.61688 -26.98922 -25.11076 -24.44015 -23.94441 -22.88168 -21.57261 -20.97267 -20.24738 -18.87122 -18.46371 -17.39425 -16.71567 -16.31860 -15.91873 -15.57724 -15.18901 -14.71799 -14.50285 -14.26385 -14.06661 -13.87112 -13.41215 -13.23251 -13.08238 -13.02487 -12.85150 -12.60028 -12.39421 -12.28496 -12.00681 -11.79716 -11.32681 -11.30939 -11.13151 -11.11197 -10.66846 -10.58096 -10.43785 -10.36588 -10.19604 -10.10818 -10.02908 -9.78918 -9.26345 -9.14959 -8.90138 -8.54045 -8.18390 -6.07614 -4.07515 1.82050 2.31576 2.47879 2.50575 2.99446 3.25790 3.36337 3.38983 3.94601 3.98358 4.20758 4.39829 4.41993 4.50003 4.69904 4.81516 4.84919 4.94688 5.05630 5.06492 5.18027 5.22328 5.27205 5.31891 5.37253 5.40100 5.50998 5.59395 5.64438 5.68702 5.72602 5.78652 5.92859 5.97685 6.03440 6.10487 6.15788 6.23546 6.38982 6.56145 6.61604 6.71024 6.82188 7.06653 7.15337 7.28120 7.51985 7.58866 7.76543 8.50457 8.92806 8.96624 9.53590 11.05514 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.027341 B = 0.002883 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.859044 B = 9708.189937 C =10158.682537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.186 4.186 3 C -0.012 4.012 4 C -0.111 4.111 5 C -0.026 4.026 6 C 0.165 3.835 7 N -0.285 5.285 8 N -0.313 5.313 9 C 0.366 3.634 10 N -0.468 5.468 11 C 0.072 3.928 12 C -0.118 4.118 13 C -0.126 4.126 14 C 0.022 3.978 15 H 0.036 0.964 16 C -0.514 4.514 17 H 0.075 0.925 18 C 0.071 3.929 19 N -0.899 5.899 20 Si 0.887 3.113 21 H -0.279 1.279 22 H -0.298 1.298 23 H -0.264 1.264 24 C 0.092 3.908 25 N -0.469 5.469 26 C 0.107 3.893 27 C -0.171 4.171 28 H 0.216 0.784 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.264 0.736 42 H 0.051 0.949 43 H 0.070 0.930 44 H 0.104 0.896 45 H 0.091 0.909 46 H 0.078 0.922 47 H 0.061 0.939 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.036 -10.840 17.024 27.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.186 4.186 3 C -0.048 4.048 4 C -0.150 4.150 5 C -0.066 4.066 6 C -0.102 4.102 7 N -0.125 5.125 8 N -0.157 5.157 9 C 0.010 3.990 10 N -0.194 5.194 11 C -0.055 4.055 12 C -0.156 4.156 13 C -0.163 4.163 14 C 0.003 3.997 15 H 0.054 0.946 16 C -0.552 4.552 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.537 5.537 20 Si 0.718 3.282 21 H -0.206 1.206 22 H -0.226 1.226 23 H -0.189 1.189 24 C -0.034 4.034 25 N -0.163 5.163 26 C -0.016 4.016 27 C -0.229 4.229 28 H 0.233 0.767 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.123 0.877 45 H 0.109 0.891 46 H 0.097 0.903 47 H 0.080 0.920 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.567 -9.805 16.939 26.299 hybrid contribution -0.763 -1.428 -0.895 1.850 sum -18.329 -11.233 16.044 26.825 Atomic orbital electron populations 1.24934 0.96034 1.01212 1.00658 1.23102 0.94573 1.00363 1.00579 1.18731 0.84813 1.02970 0.98306 1.21585 0.93775 1.03238 0.96400 1.19955 0.95116 1.02444 0.89041 1.24546 1.05493 0.87848 0.92340 1.73992 1.15236 1.16963 1.06324 1.74721 1.19983 1.17097 1.03908 1.22677 0.99736 0.85421 0.91172 1.58883 1.08960 1.55580 0.95997 1.22116 0.90749 1.00279 0.92339 1.21679 0.99121 1.00623 0.94154 1.22081 0.95409 0.99318 0.99515 1.19205 0.93321 0.97815 0.89382 0.94632 1.20929 1.13996 1.14570 1.05716 0.90657 1.24974 0.94581 0.96104 0.97375 1.69896 1.23142 1.39192 1.21466 0.86841 0.77269 0.83686 0.80437 1.20621 1.22573 1.18893 1.22171 0.88589 0.94401 0.98226 1.46386 1.50402 1.08800 1.10691 1.21823 0.99688 0.76164 1.03957 1.22240 0.95427 1.02519 1.02674 0.76730 0.89049 0.89378 0.91394 0.90504 0.88042 0.89936 0.91870 0.93545 0.91958 0.91593 0.91983 0.93126 0.92624 0.93019 0.91115 0.87729 0.89080 0.90325 0.91966 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.61 19.25 29.55 0.57 -1.04 16 2 C -0.19 -1.52 13.34 -37.12 -0.50 -2.02 16 3 C -0.01 -0.07 5.70 -29.52 -0.17 -0.24 16 4 C -0.11 -0.82 5.15 -26.73 -0.14 -0.96 16 5 C -0.03 -0.21 5.59 -27.88 -0.16 -0.36 16 6 C 0.17 2.18 7.32 -154.02 -1.13 1.05 16 7 N -0.28 -4.97 12.18 32.99 0.40 -4.57 16 8 N -0.31 -6.13 11.72 30.31 0.36 -5.78 16 9 C 0.37 6.31 6.69 -318.88 -2.13 4.18 16 10 N -0.47 -8.27 4.67 -174.56 -0.82 -9.09 16 11 C 0.07 1.15 5.40 -3.84 -0.02 1.13 16 12 C -0.12 -1.93 6.09 -26.65 -0.16 -2.09 16 13 C -0.13 -2.61 4.74 -26.61 -0.13 -2.74 16 14 C 0.02 0.51 1.85 -91.69 -0.17 0.34 16 15 H 0.04 0.85 7.20 -51.93 -0.37 0.47 16 16 C -0.51 -14.29 9.14 -34.44 -0.31 -14.61 16 17 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 18 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 19 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 20 Si 0.89 21.56 24.36 -169.99 -4.14 17.42 16 21 H -0.28 -6.60 6.89 56.52 0.39 -6.21 16 22 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.26 -6.08 6.53 56.52 0.37 -5.71 16 24 C 0.09 1.93 4.33 -3.83 -0.02 1.92 16 25 N -0.47 -6.26 2.81 -114.08 -0.32 -6.58 16 26 C 0.11 0.98 6.74 -4.04 -0.03 0.96 16 27 C -0.17 -1.32 10.24 37.16 0.38 -0.94 16 28 H 0.22 0.96 7.80 -54.09 -0.42 0.54 16 29 H 0.09 0.44 8.14 -51.92 -0.42 0.02 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.52 6.22 -51.93 -0.32 0.20 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.46 7.27 -51.93 -0.38 0.08 16 35 H 0.06 0.86 6.52 -51.93 -0.34 0.52 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.05 1.11 3.36 -51.93 -0.17 0.93 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.05 1.16 8.06 -51.93 -0.42 0.74 16 43 H 0.07 1.56 8.10 -51.93 -0.42 1.14 16 44 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.09 0.59 7.26 -51.93 -0.38 0.21 16 46 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.48 6.22 -51.92 -0.32 0.15 16 48 H 0.07 0.62 6.56 -51.93 -0.34 0.28 16 LS Contribution 379.52 15.07 5.72 5.72 Total: -1.00 -33.96 379.52 -9.95 -43.91 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -7.72 Total: -0.92 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -4.21 Total: -13.48 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.39 Total: -52.65 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.14 Total: 17.42 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.96 -9.95 -43.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908879615.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.873 kcal (2) G-P(sol) polarization free energy of solvation -33.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds