Wall clock time and date at job start Tue Mar 31 2020 11:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47169 * 108.13580 * 3 2 1 5 5 C 1.52999 * 109.47502 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47525 * 179.97438 * 5 4 3 7 7 N 1.30293 * 126.34223 * 90.02439 * 6 5 4 8 8 N 1.28535 * 110.05039 * 180.02562 * 7 6 5 9 9 C 1.31217 * 109.85888 * 0.02562 * 8 7 6 10 10 N 1.38586 * 126.46954 * 179.97438 * 9 8 7 11 11 C 1.46844 * 111.00463 * 273.26869 * 10 9 8 12 12 C 1.53034 * 109.52384 * 185.84206 * 11 10 9 13 13 C 1.53121 * 109.27769 * 300.81700 * 12 11 10 14 14 C 1.53118 * 109.15907 * 57.65874 * 13 12 11 15 15 H 1.09001 * 109.50365 * 62.28327 * 14 13 12 16 16 C 1.50701 * 109.50022 * 182.40574 * 14 13 12 17 17 H 1.07999 * 120.00105 * 119.80637 * 16 14 13 18 18 C 1.37874 * 119.99836 * 299.79658 * 16 14 13 19 19 N 1.31513 * 119.99847 * 180.02562 * 18 16 14 20 20 Si 1.86800 * 120.00228 * 0.02562 * 18 16 14 21 21 H 1.48502 * 109.47072 * 89.99829 * 20 18 16 22 22 H 1.48497 * 109.47174 * 209.99778 * 20 18 16 23 23 H 1.48507 * 109.46859 * 329.99828 * 20 18 16 24 24 C 1.46843 * 110.99792 * 37.48057 * 10 9 8 25 25 N 1.36445 * 107.05403 * 359.73691 * 9 8 7 26 26 C 1.46504 * 127.13537 * 180.26440 * 25 9 8 27 27 C 1.52997 * 109.47337 * 269.80660 * 26 25 9 28 28 H 4.44644 * 5.63407 * 180.02562 * 4 1 2 29 29 H 1.09012 * 109.46743 * 228.13047 * 3 2 1 30 30 H 1.08993 * 109.47683 * 348.12780 * 3 2 1 31 31 H 1.08999 * 109.47142 * 299.99379 * 4 3 2 32 32 H 1.09002 * 109.47628 * 59.99278 * 4 3 2 33 33 H 1.08996 * 109.47282 * 299.99970 * 5 4 3 34 34 H 1.08999 * 109.46622 * 59.99739 * 5 4 3 35 35 H 1.09005 * 109.45912 * 305.85367 * 11 10 9 36 36 H 1.08994 * 109.46053 * 65.82032 * 11 10 9 37 37 H 1.09007 * 109.50146 * 180.87849 * 12 11 10 38 38 H 1.08998 * 109.53765 * 60.77826 * 12 11 10 39 39 H 1.08998 * 109.52262 * 297.75215 * 13 12 11 40 40 H 1.08996 * 109.57073 * 177.59077 * 13 12 11 41 41 H 0.96999 * 120.00046 * 180.02562 * 19 18 16 42 42 H 1.08996 * 109.46582 * 294.17070 * 24 10 9 43 43 H 1.08998 * 109.46830 * 54.15495 * 24 10 9 44 44 H 1.09000 * 109.47352 * 29.81141 * 26 25 9 45 45 H 1.09003 * 109.46948 * 149.80831 * 26 25 9 46 46 H 1.08995 * 109.47686 * 185.75914 * 27 26 25 47 47 H 1.09008 * 109.47209 * 305.76570 * 27 26 25 48 48 H 1.09003 * 109.47381 * 65.75796 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.4499 -1.3708 5 6 4.6858 0.4512 -1.3707 6 6 5.1879 0.8931 -2.7211 7 7 5.4447 2.1170 -3.0867 8 7 5.8555 2.1361 -4.3045 9 6 5.8824 0.9153 -4.7851 10 7 6.2692 0.5411 -6.0622 11 6 5.1395 0.6156 -6.9974 12 6 5.5645 0.0592 -8.3581 13 6 6.7466 0.8739 -8.8906 14 6 7.8920 0.8196 -7.8759 15 1 8.2255 -0.2114 -7.7583 16 6 9.0379 1.6674 -8.3650 17 1 9.3812 2.5040 -7.7745 18 6 9.6482 1.3750 -9.5662 19 7 10.6485 2.1145 -9.9928 20 14 9.0542 -0.0717 -10.5878 21 1 7.9934 0.3842 -11.5218 22 1 10.1907 -0.6295 -11.3639 23 1 8.5061 -1.1199 -9.6899 24 6 7.3995 1.3540 -6.5290 25 7 5.4627 0.0836 -3.7882 26 6 5.3310 -1.3743 -3.8495 27 6 3.9221 -1.7397 -4.3209 28 1 -1.0501 0.0002 0.0001 29 1 3.0090 0.6868 0.7654 30 1 3.0098 -1.0048 0.2114 31 1 2.7928 -0.2362 -2.1361 32 1 2.7919 1.4554 -1.5822 33 1 5.0485 1.1374 -0.6055 34 1 5.0499 -0.5542 -1.1592 35 1 4.3072 0.0287 -6.6089 36 1 4.8296 1.6545 -7.1104 37 1 4.7304 0.1290 -9.0564 38 1 5.8613 -0.9839 -8.2488 39 1 6.4388 1.9091 -9.0375 40 1 7.0807 0.4549 -9.8397 41 1 11.0776 1.9090 -10.8381 42 1 7.0791 2.3894 -6.6444 43 1 8.2088 1.3033 -5.8006 44 1 6.0639 -1.7762 -4.5491 45 1 5.5039 -1.7966 -2.8596 46 1 3.7904 -2.8205 -4.2690 47 1 3.1868 -1.2529 -3.6801 48 1 3.7850 -1.4061 -5.3495 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908879615.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:42 Heat of formation + Delta-G solvation = 106.502018 kcal Electronic energy + Delta-G solvation = -26818.407044 eV Core-core repulsion = 23296.117012 eV Total energy + Delta-G solvation = -3522.290033 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.04732 -40.12093 -37.26336 -36.53261 -35.68634 -34.17437 -33.40923 -32.19482 -31.51213 -30.59078 -27.87053 -27.06808 -25.78577 -24.88518 -23.63016 -23.12439 -22.24144 -21.24388 -20.46537 -19.12312 -18.91596 -18.17773 -17.57961 -17.02401 -16.53187 -16.24481 -15.98623 -15.67565 -15.63022 -15.11675 -14.88673 -14.78531 -14.65071 -14.25521 -14.01088 -13.87589 -13.76429 -13.57142 -13.19457 -12.95615 -12.85904 -12.64280 -12.50387 -12.41234 -12.37545 -12.02751 -11.83329 -11.77607 -11.64393 -11.41425 -11.16224 -11.13436 -11.05676 -10.96976 -10.92530 -10.66060 -10.32679 -9.57995 -8.29695 -6.35678 0.70292 1.25121 1.32616 1.38744 1.50373 1.74063 1.94066 1.96621 2.34060 2.69629 3.05123 3.29796 3.57361 3.68999 3.76182 3.87891 3.94713 4.06051 4.08414 4.20669 4.24337 4.26015 4.32951 4.38547 4.43109 4.48477 4.58061 4.64190 4.66025 4.73943 4.77653 4.85276 4.87477 4.88772 4.95171 5.04108 5.08495 5.12359 5.19979 5.23805 5.26455 5.35807 5.38710 5.51617 5.64646 5.69219 5.81534 6.25747 6.30625 6.70531 6.75625 7.29422 7.71670 8.87450 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.027341 B = 0.002883 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.859044 B = 9708.189937 C =10158.682537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.212 4.212 3 C -0.008 4.008 4 C -0.101 4.101 5 C -0.024 4.024 6 C 0.189 3.811 7 N -0.333 5.333 8 N -0.362 5.362 9 C 0.348 3.652 10 N -0.456 5.456 11 C 0.072 3.928 12 C -0.107 4.107 13 C -0.126 4.126 14 C 0.027 3.973 15 H 0.038 0.962 16 C -0.524 4.524 17 H 0.025 0.975 18 C 0.011 3.989 19 N -0.951 5.951 20 Si 0.956 3.044 21 H -0.263 1.263 22 H -0.300 1.300 23 H -0.237 1.237 24 C 0.110 3.890 25 N -0.460 5.460 26 C 0.096 3.904 27 C -0.165 4.165 28 H 0.236 0.764 29 H 0.102 0.898 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.096 0.904 36 H 0.029 0.971 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.266 0.734 42 H 0.024 0.976 43 H 0.048 0.952 44 H 0.097 0.903 45 H 0.128 0.872 46 H 0.107 0.893 47 H 0.063 0.937 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.884 -14.969 18.156 31.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.212 4.212 3 C -0.044 4.044 4 C -0.139 4.139 5 C -0.063 4.063 6 C -0.079 4.079 7 N -0.173 5.173 8 N -0.206 5.206 9 C -0.010 4.010 10 N -0.182 5.182 11 C -0.055 4.055 12 C -0.145 4.145 13 C -0.163 4.163 14 C 0.008 3.992 15 H 0.056 0.944 16 C -0.563 4.563 17 H 0.043 0.957 18 C -0.186 4.186 19 N -0.591 5.591 20 Si 0.782 3.218 21 H -0.189 1.189 22 H -0.228 1.228 23 H -0.160 1.160 24 C -0.017 4.017 25 N -0.154 5.154 26 C -0.025 4.025 27 C -0.222 4.222 28 H 0.253 0.747 29 H 0.120 0.880 30 H 0.132 0.868 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.129 0.871 34 H 0.139 0.861 35 H 0.114 0.886 36 H 0.048 0.952 37 H 0.114 0.886 38 H 0.100 0.900 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.043 0.957 43 H 0.067 0.933 44 H 0.116 0.884 45 H 0.146 0.854 46 H 0.125 0.875 47 H 0.082 0.918 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.450 -13.953 18.103 30.670 hybrid contribution 0.119 -0.062 -1.082 1.090 sum -20.331 -14.014 17.021 29.992 Atomic orbital electron populations 1.25679 0.97106 1.01027 1.00178 1.23765 0.95713 1.00696 1.01059 1.18797 0.83643 1.04640 0.97342 1.21440 0.93034 1.01878 0.97595 1.20273 0.95419 1.04651 0.85990 1.25525 1.02210 0.86688 0.93516 1.73896 1.17728 1.19671 1.05960 1.74588 1.21448 1.19188 1.05349 1.22583 1.01084 0.85900 0.91476 1.58838 1.08630 1.53932 0.96750 1.22224 0.90995 1.00016 0.92225 1.21640 0.98104 1.00247 0.94496 1.21966 0.96273 0.99636 0.98461 1.19066 0.92755 0.96514 0.90886 0.94394 1.21215 1.15780 1.13837 1.05446 0.95697 1.25939 0.94513 0.99445 0.98724 1.70066 1.25020 1.41689 1.22309 0.85732 0.77034 0.80124 0.78923 1.18917 1.22802 1.15992 1.21697 0.89574 0.93479 0.96970 1.46626 1.49174 1.10233 1.09327 1.22275 1.00646 0.73408 1.06162 1.22218 0.94118 1.04328 1.01542 0.74743 0.88015 0.86848 0.91305 0.93056 0.87105 0.86134 0.88569 0.95211 0.88577 0.90039 0.93403 0.93554 0.92470 0.95741 0.93295 0.88419 0.85397 0.87457 0.91792 0.93105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.98 19.25 74.32 1.43 -1.55 16 2 C -0.21 -3.01 13.34 31.12 0.42 -2.59 16 3 C -0.01 -0.07 5.70 28.79 0.16 0.10 16 4 C -0.10 -1.22 5.15 30.59 0.16 -1.06 16 5 C -0.02 -0.30 5.59 29.85 0.17 -0.14 16 6 C 0.19 4.70 7.32 137.64 1.01 5.71 16 7 N -0.33 -11.82 12.18 -49.54 -0.60 -12.42 16 8 N -0.36 -14.71 11.72 -58.01 -0.68 -15.39 16 9 C 0.35 11.96 6.69 260.11 1.74 13.71 16 10 N -0.46 -15.96 4.67 -706.17 -3.30 -19.25 16 11 C 0.07 2.16 5.40 86.33 0.47 2.63 16 12 C -0.11 -3.16 6.09 30.65 0.19 -2.97 16 13 C -0.13 -5.09 4.74 30.67 0.15 -4.94 16 14 C 0.03 1.27 1.85 -11.49 -0.02 1.25 16 15 H 0.04 1.77 7.20 -2.39 -0.02 1.75 16 16 C -0.52 -30.73 9.14 25.60 0.23 -30.50 16 17 H 0.02 1.65 7.99 -2.91 -0.02 1.62 16 18 C 0.01 0.63 5.45 84.65 0.46 1.09 16 19 N -0.95 -60.50 13.96 21.45 0.30 -60.20 16 20 Si 0.96 44.24 24.36 68.60 1.67 45.91 16 21 H -0.26 -11.48 6.89 99.48 0.69 -10.79 16 22 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 23 H -0.24 -9.83 6.53 99.48 0.65 -9.18 16 24 C 0.11 4.85 4.33 86.33 0.37 5.23 16 25 N -0.46 -11.41 2.81 -514.85 -1.45 -12.85 16 26 C 0.10 1.40 6.74 86.38 0.58 1.99 16 27 C -0.16 -1.84 10.24 71.98 0.74 -1.10 16 28 H 0.24 1.65 7.80 -4.41 -0.03 1.62 16 29 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.07 0.83 6.22 -2.39 -0.01 0.81 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.12 0.67 7.27 -2.39 -0.02 0.65 16 35 H 0.10 2.31 6.52 -2.38 -0.02 2.30 16 36 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 38 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.05 1.91 3.36 -2.39 -0.01 1.91 16 41 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 42 H 0.02 1.19 8.06 -2.39 -0.02 1.17 16 43 H 0.05 2.31 8.10 -2.39 -0.02 2.29 16 44 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.13 0.95 7.26 -2.39 -0.02 0.93 16 46 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.06 0.72 6.22 -2.38 -0.01 0.70 16 48 H 0.05 0.75 6.56 -2.39 -0.02 0.73 16 Total: -1.00 -81.26 379.52 5.05 -76.21 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 0.86 Total: 11.17 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: 8.25 Total: -13.16 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -5.73 Total: -120.13 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.67 Total: 45.91 kcal Total: -81.26 5.05 -76.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908879615.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.710 kcal (2) G-P(sol) polarization free energy of solvation -81.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds