Wall clock time and date at job start Tue Mar 31 2020 11:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46993 * 34.96637 * 3 2 1 5 5 C 1.53001 * 109.47414 * 179.97438 * 4 3 2 6 6 C 1.50690 * 109.47549 * 180.02562 * 5 4 3 7 7 N 1.30305 * 126.34415 * 270.00202 * 6 5 4 8 8 N 1.28531 * 110.05191 * 180.02562 * 7 6 5 9 9 C 1.31219 * 109.86183 * 359.97438 * 8 7 6 10 10 N 1.38579 * 126.47431 * 180.02562 * 9 8 7 11 11 C 1.46848 * 111.00085 * 30.29899 * 10 9 8 12 12 C 1.53033 * 109.52438 * 174.16192 * 11 10 9 13 13 C 1.53116 * 109.27918 * 59.18190 * 12 11 10 14 14 C 1.53124 * 109.16292 * 302.34787 * 13 12 11 15 15 H 1.09004 * 109.50195 * 297.71175 * 14 13 12 16 16 C 1.50695 * 109.50543 * 177.63052 * 14 13 12 17 17 H 1.07998 * 120.00468 * 245.07601 * 16 14 13 18 18 C 1.37884 * 119.99681 * 65.07908 * 16 14 13 19 19 N 1.31509 * 119.99826 * 7.85132 * 18 16 14 20 20 Si 1.86802 * 119.99566 * 187.85072 * 18 16 14 21 21 H 1.48505 * 109.46811 * 84.99043 * 20 18 16 22 22 H 1.48499 * 109.46925 * 204.98677 * 20 18 16 23 23 H 1.48493 * 109.47358 * 324.99060 * 20 18 16 24 24 C 1.46848 * 110.99737 * 266.09242 * 10 9 8 25 25 N 1.36454 * 107.05567 * 0.02562 * 9 8 7 26 26 C 1.46495 * 127.13963 * 179.97438 * 25 9 8 27 27 C 1.53000 * 109.47408 * 84.32468 * 26 25 9 28 28 H 4.44649 * 5.63333 * 180.02562 * 4 1 2 29 29 H 1.08997 * 109.47142 * 274.96950 * 3 2 1 30 30 H 1.08999 * 109.47255 * 154.96409 * 3 2 1 31 31 H 1.09003 * 109.47549 * 59.99889 * 4 3 2 32 32 H 1.09007 * 109.47516 * 300.00172 * 4 3 2 33 33 H 1.09003 * 109.46813 * 59.99487 * 5 4 3 34 34 H 1.09000 * 109.46688 * 300.00288 * 5 4 3 35 35 H 1.08996 * 109.46507 * 294.18040 * 11 10 9 36 36 H 1.09002 * 109.45968 * 54.16149 * 11 10 9 37 37 H 1.08995 * 109.50522 * 179.12446 * 12 11 10 38 38 H 1.09002 * 109.50313 * 299.24495 * 12 11 10 39 39 H 1.09008 * 109.52207 * 62.24853 * 13 12 11 40 40 H 1.08993 * 109.52884 * 182.43964 * 13 12 11 41 41 H 0.97006 * 119.99230 * 179.97438 * 19 18 16 42 42 H 1.08997 * 109.46671 * 305.85493 * 24 10 9 43 43 H 1.09007 * 109.46054 * 65.82516 * 24 10 9 44 44 H 1.09002 * 109.47192 * 204.32383 * 26 25 9 45 45 H 1.09003 * 109.47111 * 324.32654 * 26 25 9 46 46 H 1.08998 * 109.46891 * 306.43882 * 27 26 25 47 47 H 1.09006 * 109.47179 * 66.43400 * 27 26 25 48 48 H 1.08992 * 109.47544 * 186.43982 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.1812 -0.8267 5 6 4.6865 -1.1803 -0.8273 6 6 5.1893 -2.3439 -1.6420 7 7 5.4477 -3.5421 -1.1996 8 7 5.8596 -4.2879 -2.1619 9 6 5.8859 -3.6001 -3.2792 10 7 6.2736 -4.0670 -4.5250 11 6 5.9842 -5.5000 -4.6635 12 6 6.2890 -5.9474 -6.0948 13 6 7.7626 -5.6728 -6.4073 14 6 8.0491 -4.1817 -6.2087 15 1 7.4477 -3.5995 -6.9069 16 6 9.5108 -3.9127 -6.4579 17 1 10.1432 -3.5751 -5.6501 18 6 10.0409 -4.0976 -7.7173 19 7 9.2471 -4.3579 -8.7330 20 14 11.8864 -3.9782 -7.9805 21 1 12.5152 -5.2892 -7.6784 22 1 12.1622 -3.6106 -9.3926 23 1 12.4488 -2.9402 -7.0798 24 6 7.6931 -3.7855 -4.7740 25 7 5.4593 -2.3384 -2.9825 26 6 5.3198 -1.2114 -3.9081 27 6 3.9638 -1.2943 -4.6119 28 1 -1.0499 -0.0001 -0.0003 29 1 3.0094 -0.0882 1.0238 30 1 3.0089 0.9319 -0.4349 31 1 2.7931 -1.0925 -1.8505 32 1 2.7936 -2.1126 -0.3919 33 1 5.0503 -1.2688 0.1964 34 1 5.0490 -0.2489 -1.2624 35 1 6.6037 -6.0646 -3.9668 36 1 4.9321 -5.6809 -4.4429 37 1 6.0889 -7.0143 -6.1931 38 1 5.6599 -5.3928 -6.7912 39 1 8.3923 -6.2572 -5.7363 40 1 7.9738 -5.9498 -7.4401 41 1 9.6201 -4.4875 -9.6191 42 1 7.8826 -2.7214 -4.6335 43 1 8.3047 -4.3583 -4.0767 44 1 5.3845 -0.2754 -3.3532 45 1 6.1172 -1.2499 -4.6502 46 1 3.8525 -2.2763 -5.0716 47 1 3.1667 -1.1414 -3.8841 48 1 3.9060 -0.5244 -5.3811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908879616.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:45 Heat of formation + Delta-G solvation = 114.298586 kcal Electronic energy + Delta-G solvation = -26749.722853 eV Core-core repulsion = 23227.770905 eV Total energy + Delta-G solvation = -3521.951948 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.76438 -38.36776 -36.47328 -35.47354 -33.97261 -32.94454 -31.80776 -30.53317 -30.07137 -29.43125 -26.90031 -25.04428 -24.32629 -23.46867 -22.81409 -21.75975 -20.65173 -20.22366 -18.72919 -18.39114 -17.22500 -16.52049 -15.91061 -15.83968 -15.40491 -15.06238 -14.62615 -14.40045 -14.23652 -13.82050 -13.60110 -13.14692 -13.08156 -13.07653 -12.78479 -12.55835 -12.50258 -12.24643 -11.96660 -11.85336 -11.59974 -11.22782 -11.11048 -11.00338 -10.87345 -10.81165 -10.54474 -10.38249 -10.29271 -10.24823 -10.00927 -9.95924 -9.66782 -9.35671 -8.93865 -8.85512 -8.39095 -7.97576 -6.09205 -4.12240 1.94449 2.43168 2.54642 2.56195 3.07302 3.27068 3.33840 3.36273 4.01812 4.10780 4.29581 4.40536 4.57448 4.58264 4.86072 4.95184 4.97093 5.05114 5.18016 5.23356 5.26379 5.37158 5.40120 5.50164 5.56448 5.61978 5.67557 5.73665 5.78764 5.88149 5.92048 6.00994 6.08773 6.13393 6.25795 6.28317 6.35776 6.52542 6.59594 6.72579 6.86818 7.00772 7.22966 7.32801 7.33744 7.64942 7.71700 7.88394 7.96383 8.33500 8.90904 9.00938 9.51765 10.99586 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.022016 B = 0.002838 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.512151 B = 9862.131272 C =10090.437111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.185 4.185 3 C -0.012 4.012 4 C -0.110 4.110 5 C -0.025 4.025 6 C 0.163 3.837 7 N -0.287 5.287 8 N -0.327 5.327 9 C 0.372 3.628 10 N -0.463 5.463 11 C 0.080 3.920 12 C -0.118 4.118 13 C -0.109 4.109 14 C 0.058 3.942 15 H 0.043 0.957 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.068 3.932 19 N -0.885 5.885 20 Si 0.889 3.111 21 H -0.279 1.279 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.076 3.924 25 N -0.469 5.469 26 C 0.107 3.893 27 C -0.165 4.165 28 H 0.216 0.784 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.037 0.963 40 H 0.079 0.921 41 H 0.261 0.739 42 H 0.059 0.941 43 H 0.036 0.964 44 H 0.090 0.910 45 H 0.102 0.898 46 H 0.071 0.929 47 H 0.056 0.944 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.602 9.267 11.664 20.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.185 4.185 3 C -0.048 4.048 4 C -0.149 4.149 5 C -0.065 4.065 6 C -0.105 4.105 7 N -0.127 5.127 8 N -0.171 5.171 9 C 0.016 3.984 10 N -0.189 5.189 11 C -0.047 4.047 12 C -0.156 4.156 13 C -0.147 4.147 14 C 0.039 3.961 15 H 0.061 0.939 16 C -0.558 4.558 17 H 0.072 0.928 18 C -0.135 4.135 19 N -0.523 5.523 20 Si 0.717 3.283 21 H -0.205 1.205 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.049 4.049 25 N -0.163 5.163 26 C -0.015 4.015 27 C -0.222 4.222 28 H 0.233 0.767 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.054 0.946 44 H 0.108 0.892 45 H 0.120 0.880 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.692 8.322 12.026 20.033 hybrid contribution 1.098 0.730 -0.681 1.484 sum -12.594 9.051 11.345 19.216 Atomic orbital electron populations 1.24919 0.96022 1.00880 1.01110 1.23110 0.94579 1.00452 1.00381 1.18737 0.84801 0.99477 1.01827 1.21560 0.93773 0.98712 1.00855 1.19938 0.95111 0.92113 0.99346 1.24493 1.05988 0.98098 0.81919 1.73919 1.15694 0.99643 1.23456 1.74652 1.21318 1.25818 0.95341 1.22794 0.99921 0.83069 0.92606 1.58933 1.22524 1.18954 1.18446 1.21984 1.00201 0.84025 0.98498 1.21719 1.00229 0.99335 0.94289 1.21647 0.91337 0.99316 1.02411 1.18698 0.96345 0.92665 0.88439 0.93924 1.21021 0.93751 1.45953 0.95102 0.92769 1.24904 0.97717 0.94985 0.95865 1.69950 1.34391 1.48168 0.99754 0.86661 0.85921 0.78517 0.77224 1.20512 1.21270 1.20019 1.22506 0.81245 0.99749 1.01438 1.46322 1.49608 1.11339 1.09022 1.21845 1.00619 0.86638 0.92441 1.22112 0.95272 1.04122 1.00735 0.76746 0.89114 0.89357 0.91365 0.90568 0.88196 0.89948 0.93298 0.91820 0.92486 0.91833 0.94378 0.90256 0.92894 0.92284 0.94603 0.89198 0.88003 0.90979 0.92459 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.74 19.25 29.55 0.57 -1.17 16 2 C -0.19 -1.64 13.34 -37.12 -0.50 -2.13 16 3 C -0.01 -0.08 5.70 -29.52 -0.17 -0.25 16 4 C -0.11 -0.91 5.15 -26.73 -0.14 -1.05 16 5 C -0.03 -0.22 5.58 -27.89 -0.16 -0.38 16 6 C 0.16 2.29 7.32 -154.01 -1.13 1.17 16 7 N -0.29 -5.13 12.18 32.99 0.40 -4.73 16 8 N -0.33 -6.45 11.59 30.31 0.35 -6.09 16 9 C 0.37 6.76 6.78 -318.87 -2.16 4.60 16 10 N -0.46 -8.69 4.67 -174.55 -0.82 -9.51 16 11 C 0.08 1.46 5.02 -3.84 -0.02 1.44 16 12 C -0.12 -2.19 6.09 -26.65 -0.16 -2.35 16 13 C -0.11 -2.44 5.09 -26.61 -0.14 -2.57 16 14 C 0.06 1.36 2.13 -91.69 -0.20 1.17 16 15 H 0.04 1.11 8.11 -51.93 -0.42 0.69 16 16 C -0.52 -13.69 8.49 -34.44 -0.29 -13.99 16 17 H 0.05 1.43 7.76 -52.49 -0.41 1.02 16 18 C 0.07 1.81 5.24 -17.82 -0.09 1.71 16 19 N -0.88 -24.41 12.07 55.43 0.67 -23.74 16 20 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 C 0.08 1.59 4.62 -3.83 -0.02 1.57 16 25 N -0.47 -6.90 2.81 -114.09 -0.32 -7.22 16 26 C 0.11 1.21 6.79 -4.04 -0.03 1.19 16 27 C -0.16 -1.68 10.24 37.16 0.38 -1.30 16 28 H 0.22 1.08 7.80 -54.10 -0.42 0.65 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.60 6.89 -51.93 -0.36 0.24 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.54 7.18 -51.93 -0.37 0.17 16 35 H 0.05 0.94 8.06 -51.93 -0.42 0.52 16 36 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.04 0.86 8.14 -51.92 -0.42 0.43 16 40 H 0.08 1.97 6.87 -51.93 -0.36 1.61 16 41 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 42 H 0.06 1.21 7.72 -51.93 -0.40 0.81 16 43 H 0.04 0.79 8.14 -51.92 -0.42 0.37 16 44 H 0.09 0.74 7.10 -51.93 -0.37 0.37 16 45 H 0.10 1.30 7.76 -51.93 -0.40 0.90 16 46 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.06 0.53 6.89 -51.93 -0.36 0.17 16 48 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 390.99 15.07 5.89 5.89 Total: -1.00 -31.19 390.99 -11.15 -42.34 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -8.07 Total: -0.29 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -4.24 Total: -12.34 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 0.29 Total: -51.30 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.19 -11.15 -42.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908879616.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.640 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds