Wall clock time and date at job start Tue Mar 31 2020 11:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46993 * 34.96637 * 3 2 1 5 5 C 1.53001 * 109.47414 * 179.97438 * 4 3 2 6 6 C 1.50690 * 109.47549 * 180.02562 * 5 4 3 7 7 N 1.30305 * 126.34415 * 270.00202 * 6 5 4 8 8 N 1.28531 * 110.05191 * 180.02562 * 7 6 5 9 9 C 1.31219 * 109.86183 * 359.97438 * 8 7 6 10 10 N 1.38579 * 126.47431 * 180.02562 * 9 8 7 11 11 C 1.46848 * 111.00085 * 30.29899 * 10 9 8 12 12 C 1.53033 * 109.52438 * 174.16192 * 11 10 9 13 13 C 1.53116 * 109.27918 * 59.18190 * 12 11 10 14 14 C 1.53124 * 109.16292 * 302.34787 * 13 12 11 15 15 H 1.09004 * 109.50195 * 297.71175 * 14 13 12 16 16 C 1.50695 * 109.50543 * 177.63052 * 14 13 12 17 17 H 1.07998 * 120.00468 * 245.07601 * 16 14 13 18 18 C 1.37884 * 119.99681 * 65.07908 * 16 14 13 19 19 N 1.31509 * 119.99826 * 7.85132 * 18 16 14 20 20 Si 1.86802 * 119.99566 * 187.85072 * 18 16 14 21 21 H 1.48505 * 109.46811 * 84.99043 * 20 18 16 22 22 H 1.48499 * 109.46925 * 204.98677 * 20 18 16 23 23 H 1.48493 * 109.47358 * 324.99060 * 20 18 16 24 24 C 1.46848 * 110.99737 * 266.09242 * 10 9 8 25 25 N 1.36454 * 107.05567 * 0.02562 * 9 8 7 26 26 C 1.46495 * 127.13963 * 179.97438 * 25 9 8 27 27 C 1.53000 * 109.47408 * 84.32468 * 26 25 9 28 28 H 4.44649 * 5.63333 * 180.02562 * 4 1 2 29 29 H 1.08997 * 109.47142 * 274.96950 * 3 2 1 30 30 H 1.08999 * 109.47255 * 154.96409 * 3 2 1 31 31 H 1.09003 * 109.47549 * 59.99889 * 4 3 2 32 32 H 1.09007 * 109.47516 * 300.00172 * 4 3 2 33 33 H 1.09003 * 109.46813 * 59.99487 * 5 4 3 34 34 H 1.09000 * 109.46688 * 300.00288 * 5 4 3 35 35 H 1.08996 * 109.46507 * 294.18040 * 11 10 9 36 36 H 1.09002 * 109.45968 * 54.16149 * 11 10 9 37 37 H 1.08995 * 109.50522 * 179.12446 * 12 11 10 38 38 H 1.09002 * 109.50313 * 299.24495 * 12 11 10 39 39 H 1.09008 * 109.52207 * 62.24853 * 13 12 11 40 40 H 1.08993 * 109.52884 * 182.43964 * 13 12 11 41 41 H 0.97006 * 119.99230 * 179.97438 * 19 18 16 42 42 H 1.08997 * 109.46671 * 305.85493 * 24 10 9 43 43 H 1.09007 * 109.46054 * 65.82516 * 24 10 9 44 44 H 1.09002 * 109.47192 * 204.32383 * 26 25 9 45 45 H 1.09003 * 109.47111 * 324.32654 * 26 25 9 46 46 H 1.08998 * 109.46891 * 306.43882 * 27 26 25 47 47 H 1.09006 * 109.47179 * 66.43400 * 27 26 25 48 48 H 1.08992 * 109.47544 * 186.43982 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.1812 -0.8267 5 6 4.6865 -1.1803 -0.8273 6 6 5.1893 -2.3439 -1.6420 7 7 5.4477 -3.5421 -1.1996 8 7 5.8596 -4.2879 -2.1619 9 6 5.8859 -3.6001 -3.2792 10 7 6.2736 -4.0670 -4.5250 11 6 5.9842 -5.5000 -4.6635 12 6 6.2890 -5.9474 -6.0948 13 6 7.7626 -5.6728 -6.4073 14 6 8.0491 -4.1817 -6.2087 15 1 7.4477 -3.5995 -6.9069 16 6 9.5108 -3.9127 -6.4579 17 1 10.1432 -3.5751 -5.6501 18 6 10.0409 -4.0976 -7.7173 19 7 9.2471 -4.3579 -8.7330 20 14 11.8864 -3.9782 -7.9805 21 1 12.5152 -5.2892 -7.6784 22 1 12.1622 -3.6106 -9.3926 23 1 12.4488 -2.9402 -7.0798 24 6 7.6931 -3.7855 -4.7740 25 7 5.4593 -2.3384 -2.9825 26 6 5.3198 -1.2114 -3.9081 27 6 3.9638 -1.2943 -4.6119 28 1 -1.0499 -0.0001 -0.0003 29 1 3.0094 -0.0882 1.0238 30 1 3.0089 0.9319 -0.4349 31 1 2.7931 -1.0925 -1.8505 32 1 2.7936 -2.1126 -0.3919 33 1 5.0503 -1.2688 0.1964 34 1 5.0490 -0.2489 -1.2624 35 1 6.6037 -6.0646 -3.9668 36 1 4.9321 -5.6809 -4.4429 37 1 6.0889 -7.0143 -6.1931 38 1 5.6599 -5.3928 -6.7912 39 1 8.3923 -6.2572 -5.7363 40 1 7.9738 -5.9498 -7.4401 41 1 9.6201 -4.4875 -9.6191 42 1 7.8826 -2.7214 -4.6335 43 1 8.3047 -4.3583 -4.0767 44 1 5.3845 -0.2754 -3.3532 45 1 6.1172 -1.2499 -4.6502 46 1 3.8525 -2.2763 -5.0716 47 1 3.1667 -1.1414 -3.8841 48 1 3.9060 -0.5244 -5.3811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908879616.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:44 Heat of formation + Delta-G solvation = 100.005429 kcal Electronic energy + Delta-G solvation = -26750.342651 eV Core-core repulsion = 23227.770905 eV Total energy + Delta-G solvation = -3522.571746 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.02367 -39.96821 -37.23272 -36.50028 -35.66963 -34.01935 -33.24047 -31.89047 -31.48489 -30.50574 -27.88137 -26.96354 -25.64151 -24.73165 -23.72146 -23.26521 -22.07517 -21.29257 -20.39044 -19.01738 -18.75377 -17.91203 -17.37930 -17.07530 -16.49237 -16.24007 -15.96434 -15.64619 -15.39553 -15.04032 -14.68816 -14.63376 -14.47972 -14.23569 -13.96212 -13.75854 -13.64116 -13.47855 -13.16816 -12.86450 -12.78663 -12.68444 -12.59439 -12.44365 -12.40251 -12.01261 -11.85808 -11.81128 -11.65919 -11.42605 -11.16977 -11.13837 -11.02628 -10.92472 -10.79068 -10.47433 -10.31280 -9.43812 -8.14401 -6.23706 0.72222 1.28112 1.40992 1.43474 1.51276 1.74513 1.94178 1.96996 2.41485 2.75634 3.16603 3.31083 3.58095 3.67948 3.87735 3.89322 4.04428 4.07261 4.21019 4.24137 4.24586 4.26439 4.39221 4.43066 4.49320 4.55339 4.62608 4.67342 4.77993 4.79850 4.82001 4.86713 4.91091 4.95330 5.03294 5.08341 5.20309 5.24133 5.26479 5.28395 5.35294 5.39295 5.60864 5.63475 5.76632 5.94313 5.98897 6.31700 6.33868 6.76009 6.85696 7.43151 7.71807 8.93793 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.022016 B = 0.002838 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.512151 B = 9862.131272 C =10090.437111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.213 4.213 3 C -0.008 4.008 4 C -0.100 4.100 5 C -0.024 4.024 6 C 0.187 3.813 7 N -0.328 5.328 8 N -0.357 5.357 9 C 0.350 3.650 10 N -0.458 5.458 11 C 0.086 3.914 12 C -0.106 4.106 13 C -0.103 4.103 14 C 0.061 3.939 15 H 0.016 0.984 16 C -0.538 4.538 17 H 0.049 0.951 18 C 0.024 3.976 19 N -0.911 5.911 20 Si 0.948 3.052 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.270 1.270 24 C 0.095 3.905 25 N -0.465 5.465 26 C 0.100 3.900 27 C -0.157 4.157 28 H 0.236 0.764 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.038 0.962 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.029 0.971 40 H 0.052 0.948 41 H 0.263 0.737 42 H 0.060 0.940 43 H 0.018 0.982 44 H 0.132 0.868 45 H 0.084 0.916 46 H 0.041 0.959 47 H 0.070 0.930 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.309 11.310 12.699 22.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.213 4.213 3 C -0.044 4.044 4 C -0.139 4.139 5 C -0.063 4.063 6 C -0.082 4.082 7 N -0.168 5.168 8 N -0.202 5.202 9 C -0.007 4.007 10 N -0.183 5.183 11 C -0.041 4.041 12 C -0.144 4.144 13 C -0.141 4.141 14 C 0.042 3.958 15 H 0.034 0.966 16 C -0.577 4.577 17 H 0.067 0.933 18 C -0.176 4.176 19 N -0.549 5.549 20 Si 0.774 3.226 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.195 1.195 24 C -0.032 4.032 25 N -0.158 5.158 26 C -0.021 4.021 27 C -0.215 4.215 28 H 0.253 0.747 29 H 0.122 0.878 30 H 0.130 0.870 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.048 0.952 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.036 0.964 44 H 0.150 0.850 45 H 0.103 0.897 46 H 0.060 0.940 47 H 0.089 0.911 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.412 10.377 13.069 22.050 hybrid contribution 1.238 0.161 -0.943 1.564 sum -13.174 10.538 12.127 20.776 Atomic orbital electron populations 1.25675 0.97102 1.00458 1.00743 1.23772 0.95726 1.00923 1.00836 1.18798 0.83655 0.99505 1.02452 1.21416 0.93062 0.98596 1.00812 1.20266 0.95388 0.91222 0.99474 1.25494 1.02697 0.98269 0.81735 1.73853 1.17980 1.01337 1.23588 1.74534 1.22050 1.27392 0.96187 1.22689 1.01494 0.84607 0.91943 1.58860 1.20828 1.19210 1.19452 1.21926 1.00723 0.83787 0.97695 1.21604 0.97280 1.00987 0.94483 1.21480 0.93917 0.98218 1.00470 1.18559 0.94745 0.93105 0.89427 0.96620 1.21340 0.95134 1.46029 0.95161 0.93320 1.25599 1.01648 0.94736 0.95654 1.70055 1.35985 1.48827 1.00031 0.85725 0.81100 0.78520 0.77248 1.20281 1.20764 1.19461 1.22120 0.82646 0.99330 0.99057 1.46575 1.48612 1.10913 1.09728 1.22179 1.00605 0.87024 0.92323 1.22067 0.94964 1.03114 1.01373 0.74709 0.87789 0.87039 0.91758 0.92791 0.86786 0.86474 0.94402 0.90429 0.89963 0.91948 0.95176 0.92899 0.92840 0.92173 0.96379 0.85011 0.89726 0.93950 0.91118 0.88289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.26 19.25 74.32 1.43 -1.83 16 2 C -0.21 -3.30 13.34 31.12 0.42 -2.88 16 3 C -0.01 -0.08 5.70 28.79 0.16 0.09 16 4 C -0.10 -1.38 5.15 30.59 0.16 -1.22 16 5 C -0.02 -0.34 5.58 29.85 0.17 -0.18 16 6 C 0.19 4.93 7.32 137.63 1.01 5.94 16 7 N -0.33 -11.60 12.18 -49.54 -0.60 -12.21 16 8 N -0.36 -14.22 11.59 -58.00 -0.67 -14.89 16 9 C 0.35 12.73 6.78 260.11 1.76 14.50 16 10 N -0.46 -17.47 4.67 -706.15 -3.30 -20.77 16 11 C 0.09 3.15 5.02 86.32 0.43 3.59 16 12 C -0.11 -3.95 6.09 30.64 0.19 -3.76 16 13 C -0.10 -4.73 5.09 30.67 0.16 -4.57 16 14 C 0.06 2.97 2.13 -11.49 -0.02 2.95 16 15 H 0.02 0.85 8.11 -2.38 -0.02 0.83 16 16 C -0.54 -29.02 8.49 25.60 0.22 -28.80 16 17 H 0.05 2.61 7.76 -2.91 -0.02 2.59 16 18 C 0.02 1.28 5.24 84.66 0.44 1.72 16 19 N -0.91 -51.18 12.07 21.45 0.26 -50.92 16 20 Si 0.95 42.75 29.54 68.60 2.03 44.78 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 C 0.10 4.08 4.62 86.33 0.40 4.48 16 25 N -0.46 -13.09 2.81 -514.85 -1.45 -14.54 16 26 C 0.10 2.04 6.79 86.38 0.59 2.63 16 27 C -0.16 -2.90 10.24 71.98 0.74 -2.16 16 28 H 0.24 1.92 7.80 -4.42 -0.03 1.88 16 29 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.94 6.89 -2.39 -0.02 0.93 16 32 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.12 0.92 7.18 -2.39 -0.02 0.90 16 35 H 0.04 1.48 8.06 -2.39 -0.02 1.46 16 36 H 0.08 2.65 8.10 -2.39 -0.02 2.63 16 37 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.05 2.70 6.87 -2.39 -0.02 2.69 16 41 H 0.26 14.06 8.31 -92.70 -0.77 13.29 16 42 H 0.06 2.52 7.72 -2.39 -0.02 2.50 16 43 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 44 H 0.13 1.58 7.10 -2.39 -0.02 1.57 16 45 H 0.08 2.07 7.76 -2.39 -0.02 2.05 16 46 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.07 1.11 6.89 -2.38 -0.02 1.09 16 48 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -70.30 390.99 5.43 -64.87 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.92 Total: 13.19 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: 8.24 Total: -9.52 kcal Atomic # 7 Polarization: -107.56 SS G_CDS: -5.76 Total: -113.33 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -70.30 5.43 -64.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908879616.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.877 kcal (2) G-P(sol) polarization free energy of solvation -70.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds