Wall clock time and date at job start Tue Mar 31 2020 11:54:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17403 * 1
3 3 C 1.47198 * 179.97438 * 2 1
4 4 C 1.53004 * 109.46879 * 159.26405 * 3 2 1
5 5 C 1.53001 * 109.47109 * 179.97438 * 4 3 2
6 6 C 1.50699 * 109.47436 * 180.02562 * 5 4 3
7 7 N 1.30289 * 126.35129 * 276.11344 * 6 5 4
8 8 N 1.28524 * 110.05851 * 179.97438 * 7 6 5
9 9 C 1.31213 * 109.85759 * 359.73993 * 8 7 6
10 10 N 1.38579 * 126.47114 * 180.26049 * 9 8 7
11 11 C 1.46906 * 111.00153 * 255.81374 * 10 9 8
12 12 C 1.46895 * 111.00466 * 19.76781 * 10 9 8
13 13 H 1.08999 * 109.47208 * 300.00408 * 12 10 9
14 14 C 1.53003 * 109.46924 * 59.99769 * 12 10 9
15 15 C 1.50704 * 109.47660 * 180.02562 * 12 10 9
16 16 H 1.07995 * 119.99244 * 0.02562 * 15 12 10
17 17 C 1.37871 * 120.00166 * 180.02562 * 15 12 10
18 18 N 1.31514 * 119.99916 * 359.97438 * 17 15 12
19 19 Si 1.86800 * 120.00129 * 180.02562 * 17 15 12
20 20 H 1.48493 * 109.47181 * 59.99340 * 19 17 15
21 21 H 1.48497 * 109.47250 * 180.02562 * 19 17 15
22 22 H 1.48503 * 109.46665 * 299.99815 * 19 17 15
23 23 N 1.36450 * 107.05709 * 0.40468 * 9 8 7
24 24 C 1.46493 * 127.14080 * 179.87398 * 23 9 8
25 25 C 1.50706 * 109.47118 * 84.53050 * 24 23 9
26 26 C 1.31002 * 119.99457 * 96.14411 * 25 24 23
27 27 C 1.50699 * 120.00393 * 276.14165 * 25 24 23
28 28 H 4.44647 * 5.63391 * 180.02562 * 4 1 2
29 29 H 1.08995 * 109.47355 * 39.27383 * 3 2 1
30 30 H 1.08993 * 109.47402 * 279.26279 * 3 2 1
31 31 H 1.09005 * 109.46874 * 60.00284 * 4 3 2
32 32 H 1.08996 * 109.47674 * 300.00419 * 4 3 2
33 33 H 1.08998 * 109.47077 * 59.99995 * 5 4 3
34 34 H 1.09005 * 109.47059 * 300.00619 * 5 4 3
35 35 H 1.09001 * 109.47162 * 66.69330 * 11 10 9
36 36 H 1.08993 * 109.47175 * 186.69660 * 11 10 9
37 37 H 1.09003 * 109.47069 * 306.69975 * 11 10 9
38 38 H 1.08999 * 109.47131 * 300.00624 * 14 12 10
39 39 H 1.09005 * 109.46945 * 60.00645 * 14 12 10
40 40 H 1.09003 * 109.46967 * 180.02562 * 14 12 10
41 41 H 0.97003 * 119.99675 * 180.02562 * 18 17 15
42 42 H 1.08999 * 109.47273 * 324.53649 * 24 23 9
43 43 H 1.09002 * 109.47805 * 204.53493 * 24 23 9
44 44 H 1.08001 * 119.99961 * 177.04290 * 26 25 24
45 45 H 1.08001 * 120.00161 * 356.76685 * 26 25 24
46 46 H 1.08989 * 109.47066 * 275.00581 * 27 25 24
47 47 H 1.09000 * 109.46948 * 35.00809 * 27 25 24
48 48 H 1.08994 * 109.46804 * 155.00093 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 6 3.1554 1.3500 -0.5108
5 6 4.6854 1.3510 -0.5102
6 6 5.1871 2.6802 -1.0126
7 7 5.3395 3.0270 -2.2592
8 7 5.7857 4.2302 -2.3307
9 6 5.9380 4.7215 -1.1236
10 7 6.3936 5.9901 -0.8020
11 6 7.7824 5.9457 -0.3252
12 6 6.2583 6.9035 -1.9445
13 1 6.8420 6.5248 -2.7835
14 6 4.7859 6.9989 -2.3496
15 6 6.7631 8.2698 -1.5581
16 1 7.1465 8.4423 -0.5633
17 6 6.7355 9.2996 -2.4744
18 7 6.2690 9.0893 -3.6860
19 14 7.3619 10.9930 -1.9956
20 1 8.7911 10.8996 -1.6039
21 1 7.2238 11.9166 -3.1502
22 1 6.5678 11.5092 -0.8518
23 7 5.5663 3.7462 -0.2447
24 6 5.5671 3.8266 1.2181
25 6 4.2848 4.4645 1.6869
26 6 3.2788 3.7139 2.0620
27 6 4.1597 5.9659 1.7241
28 1 -1.0502 -0.0003 0.0003
29 1 3.0097 -0.7947 -0.6505
30 1 3.0095 -0.1646 1.0142
31 1 2.7917 2.1455 0.1397
32 1 2.7919 1.5154 -1.5249
33 1 5.0494 0.5555 -1.1603
34 1 5.0484 1.1858 0.5043
35 1 8.4378 5.6452 -1.1426
36 1 8.0757 6.9329 0.0316
37 1 7.8640 5.2259 0.4893
38 1 4.4212 6.0105 -2.6292
39 1 4.2021 7.3777 -1.5106
40 1 4.6856 7.6763 -3.1977
41 1 6.2499 9.8137 -4.3308
42 1 6.4140 4.4281 1.5484
43 1 5.6484 2.8236 1.6372
44 1 2.3771 4.1702 2.4430
45 1 3.3494 2.6389 1.9861
46 1 4.5672 6.3412 2.6627
47 1 4.7124 6.3973 0.8896
48 1 3.1089 6.2449 1.6469
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000909321716.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:54:30
Heat of formation + Delta-G solvation = 155.482473 kcal
Electronic energy + Delta-G solvation = -27410.422322 eV
Core-core repulsion = 23890.256241 eV
Total energy + Delta-G solvation = -3520.166081 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 316.196 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-42.50741 -37.19821 -36.86089 -35.99102 -33.30686 -33.10154 -32.42870 -29.73426
-29.22928 -27.49053 -27.20293 -26.55329 -25.27494 -24.30352 -22.66214 -21.76688
-20.47898 -19.52739 -18.63362 -18.26036 -16.80668 -16.21363 -16.01936 -15.66697
-15.09024 -14.89558 -14.69427 -14.59020 -14.13399 -13.95762 -13.56233 -13.29877
-13.08775 -12.84894 -12.63733 -12.47488 -12.16316 -11.84877 -11.79614 -11.63220
-11.31440 -11.13073 -11.09089 -10.98355 -10.92224 -10.69927 -10.43425 -10.29312
-10.27387 -10.20974 -10.06368 -9.89309 -9.65735 -9.21476 -9.19176 -8.60045
-8.43972 -7.43735 -6.04177 -4.11967 1.85473 2.26042 2.64292 2.67008
2.91863 3.29032 3.34666 3.35667 3.42000 4.16161 4.32931 4.48305
4.54412 4.64310 4.67136 4.73023 5.03577 5.09091 5.15916 5.22741
5.25249 5.28972 5.39438 5.53475 5.64862 5.67135 5.78163 5.81977
5.84800 5.95886 5.99111 6.11209 6.12519 6.23434 6.28615 6.41822
6.49944 6.54422 6.82191 6.93002 6.98423 7.14763 7.25418 7.44863
7.45553 7.70833 7.74471 7.97123 8.25330 8.46068 8.90110 9.37412
9.52863 11.02147
Molecular weight = 316.20amu
Principal moments of inertia in cm(-1)
A = 0.018961 B = 0.003470 C = 0.003365
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1476.398072 B = 8066.294301 C = 8318.846496
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C -0.184 4.184
3 C -0.011 4.011
4 C -0.116 4.116
5 C -0.021 4.021
6 C 0.151 3.849
7 N -0.285 5.285
8 N -0.316 5.316
9 C 0.386 3.614
10 N -0.459 5.459
11 C 0.043 3.957
12 C 0.230 3.770
13 H 0.024 0.976
14 C -0.133 4.133
15 C -0.517 4.517
16 H 0.064 0.936
17 C 0.065 3.935
18 N -0.884 5.884
19 Si 0.899 3.101
20 H -0.277 1.277
21 H -0.287 1.287
22 H -0.277 1.277
23 N -0.476 5.476
24 C 0.148 3.852
25 C -0.129 4.129
26 C -0.183 4.183
27 C -0.131 4.131
28 H 0.215 0.785
29 H 0.089 0.911
30 H 0.086 0.914
31 H 0.073 0.927
32 H 0.077 0.923
33 H 0.096 0.904
34 H 0.076 0.924
35 H 0.032 0.968
36 H 0.093 0.907
37 H 0.042 0.958
38 H 0.021 0.979
39 H 0.025 0.975
40 H 0.088 0.912
41 H 0.263 0.737
42 H 0.100 0.900
43 H 0.092 0.908
44 H 0.102 0.898
45 H 0.098 0.902
46 H 0.065 0.935
47 H 0.099 0.901
48 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.844 -15.472 13.237 20.930
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C -0.184 4.184
3 C -0.048 4.048
4 C -0.154 4.154
5 C -0.061 4.061
6 C -0.117 4.117
7 N -0.125 5.125
8 N -0.159 5.159
9 C 0.030 3.970
10 N -0.185 5.185
11 C -0.105 4.105
12 C 0.126 3.874
13 H 0.042 0.958
14 C -0.191 4.191
15 C -0.555 4.555
16 H 0.082 0.918
17 C -0.138 4.138
18 N -0.521 5.521
19 Si 0.727 3.273
20 H -0.203 1.203
21 H -0.213 1.213
22 H -0.202 1.202
23 N -0.172 5.172
24 C 0.025 3.975
25 C -0.130 4.130
26 C -0.221 4.221
27 C -0.188 4.188
28 H 0.232 0.768
29 H 0.108 0.892
30 H 0.104 0.896
31 H 0.091 0.909
32 H 0.096 0.904
33 H 0.115 0.885
34 H 0.095 0.905
35 H 0.051 0.949
36 H 0.112 0.888
37 H 0.061 0.939
38 H 0.040 0.960
39 H 0.044 0.956
40 H 0.107 0.893
41 H 0.073 0.927
42 H 0.118 0.882
43 H 0.110 0.890
44 H 0.120 0.880
45 H 0.116 0.884
46 H 0.083 0.917
47 H 0.118 0.882
48 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -5.101 -15.224 11.896 19.983
hybrid contribution 0.383 0.882 1.121 1.477
sum -4.718 -14.341 13.017 19.934
Atomic orbital electron populations
1.24906 0.96006 1.00849 1.01285 1.23102 0.94567 1.00420 1.00271
1.18736 0.84828 0.98661 1.02543 1.21632 0.93890 0.96502 1.03382
1.19864 0.95157 0.89838 1.01251 1.24380 1.06420 0.92373 0.88481
1.73941 1.15854 1.07155 1.15533 1.74809 1.20615 1.02616 1.17900
1.23057 0.99787 0.89294 0.84837 1.59200 1.20238 0.99988 1.39072
1.22288 0.86845 1.02935 0.98393 1.19326 0.95006 0.88563 0.84466
0.95811 1.21816 0.96390 0.99387 1.01489 1.21012 1.42182 0.93536
0.98785 0.91804 1.24892 0.95207 0.98873 0.94849 1.69913 1.45257
1.32644 1.04321 0.86554 0.79248 0.83614 0.77929 1.20276 1.21272
1.20223 1.46277 1.50893 1.12681 1.07363 1.20795 0.98041 1.01860
0.76830 1.21944 0.95132 0.97306 0.98644 1.23800 0.97979 0.99487
1.00795 1.21026 1.02768 0.91071 1.03934 0.76780 0.89227 0.89597
0.90887 0.90438 0.88546 0.90528 0.94917 0.88834 0.93881 0.96005
0.95606 0.89325 0.92687 0.88175 0.88967 0.88000 0.88413 0.91658
0.88224 0.92332
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.21 -2.01 19.25 29.55 0.57 -1.44 16
2 C -0.18 -1.85 13.34 -37.12 -0.50 -2.35 16
3 C -0.01 -0.09 5.70 -29.52 -0.17 -0.26 16
4 C -0.12 -1.18 5.15 -26.73 -0.14 -1.31 16
5 C -0.02 -0.22 5.64 -27.88 -0.16 -0.38 16
6 C 0.15 2.40 7.32 -154.01 -1.13 1.27 16
7 N -0.29 -5.83 12.18 32.99 0.40 -5.42 16
8 N -0.32 -7.29 9.96 30.31 0.30 -6.99 16
9 C 0.39 7.89 6.05 -318.89 -1.93 5.96 16
10 N -0.46 -9.66 3.28 -176.08 -0.58 -10.23 16
11 C 0.04 0.78 9.09 60.07 0.55 1.33 16
12 C 0.23 5.85 1.73 -68.86 -0.12 5.73 16
13 H 0.02 0.70 7.92 -51.93 -0.41 0.29 16
14 C -0.13 -3.44 8.80 37.16 0.33 -3.11 16
15 C -0.52 -13.58 7.96 -34.44 -0.27 -13.85 16
16 H 0.06 1.61 6.39 -52.49 -0.34 1.27 16
17 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16
18 N -0.88 -25.18 11.32 55.43 0.63 -24.55 16
19 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16
20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16
21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16
22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16
23 N -0.48 -7.69 2.79 -115.37 -0.32 -8.01 16
24 C 0.15 1.79 6.21 -5.19 -0.03 1.75 16
25 C -0.13 -1.59 5.64 -101.06 -0.57 -2.16 16
26 C -0.18 -1.91 12.83 29.01 0.37 -1.53 16
27 C -0.13 -1.82 10.05 36.01 0.36 -1.46 16
28 H 0.22 1.33 7.80 -54.08 -0.42 0.91 16
29 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16
30 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16
31 H 0.07 0.81 5.85 -51.93 -0.30 0.51 16
32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16
33 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16
34 H 0.08 0.58 7.02 -51.93 -0.36 0.22 16
35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16
36 H 0.09 1.71 6.34 -51.93 -0.33 1.38 16
37 H 0.04 0.64 6.47 -51.93 -0.34 0.31 16
38 H 0.02 0.55 6.20 -51.93 -0.32 0.23 16
39 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16
40 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16
41 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16
42 H 0.10 1.19 6.48 -51.93 -0.34 0.85 16
43 H 0.09 0.82 6.85 -51.93 -0.36 0.46 16
44 H 0.10 1.01 8.01 -52.49 -0.42 0.59 16
45 H 0.10 0.86 6.94 -52.49 -0.36 0.50 16
46 H 0.06 0.79 8.14 -51.94 -0.42 0.36 16
47 H 0.10 1.74 6.71 -51.93 -0.35 1.39 16
48 H 0.06 0.79 8.00 -51.93 -0.42 0.38 16
LS Contribution 388.79 15.07 5.86 5.86
Total: -1.00 -32.33 388.79 -9.13 -41.47
By element:
Atomic # 1 Polarization: 9.79 SS G_CDS: -7.47 Total: 2.31 kcal
Atomic # 6 Polarization: -7.22 SS G_CDS: -2.93 Total: -10.15 kcal
Atomic # 7 Polarization: -55.63 SS G_CDS: 0.43 Total: -55.20 kcal
Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal
Total LS contribution 5.86 Total: 5.86 kcal
Total: -32.33 -9.13 -41.47 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000909321716.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 196.949 kcal
(2) G-P(sol) polarization free energy of solvation -32.332 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.617 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal
(6) G-S(sol) free energy of system = (1) + (5) 155.482 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds