Wall clock time and date at job start Tue Mar 31 2020 11:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46879 * 159.26405 * 3 2 1 5 5 C 1.53001 * 109.47109 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47436 * 180.02562 * 5 4 3 7 7 N 1.30289 * 126.35129 * 276.11344 * 6 5 4 8 8 N 1.28524 * 110.05851 * 179.97438 * 7 6 5 9 9 C 1.31213 * 109.85759 * 359.73993 * 8 7 6 10 10 N 1.38579 * 126.47114 * 180.26049 * 9 8 7 11 11 C 1.46906 * 111.00153 * 255.81374 * 10 9 8 12 12 C 1.46895 * 111.00466 * 19.76781 * 10 9 8 13 13 H 1.08999 * 109.47208 * 300.00408 * 12 10 9 14 14 C 1.53003 * 109.46924 * 59.99769 * 12 10 9 15 15 C 1.50704 * 109.47660 * 180.02562 * 12 10 9 16 16 H 1.07995 * 119.99244 * 0.02562 * 15 12 10 17 17 C 1.37871 * 120.00166 * 180.02562 * 15 12 10 18 18 N 1.31514 * 119.99916 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 120.00129 * 180.02562 * 17 15 12 20 20 H 1.48493 * 109.47181 * 59.99340 * 19 17 15 21 21 H 1.48497 * 109.47250 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46665 * 299.99815 * 19 17 15 23 23 N 1.36450 * 107.05709 * 0.40468 * 9 8 7 24 24 C 1.46493 * 127.14080 * 179.87398 * 23 9 8 25 25 C 1.50706 * 109.47118 * 84.53050 * 24 23 9 26 26 C 1.31002 * 119.99457 * 96.14411 * 25 24 23 27 27 C 1.50699 * 120.00393 * 276.14165 * 25 24 23 28 28 H 4.44647 * 5.63391 * 180.02562 * 4 1 2 29 29 H 1.08995 * 109.47355 * 39.27383 * 3 2 1 30 30 H 1.08993 * 109.47402 * 279.26279 * 3 2 1 31 31 H 1.09005 * 109.46874 * 60.00284 * 4 3 2 32 32 H 1.08996 * 109.47674 * 300.00419 * 4 3 2 33 33 H 1.08998 * 109.47077 * 59.99995 * 5 4 3 34 34 H 1.09005 * 109.47059 * 300.00619 * 5 4 3 35 35 H 1.09001 * 109.47162 * 66.69330 * 11 10 9 36 36 H 1.08993 * 109.47175 * 186.69660 * 11 10 9 37 37 H 1.09003 * 109.47069 * 306.69975 * 11 10 9 38 38 H 1.08999 * 109.47131 * 300.00624 * 14 12 10 39 39 H 1.09005 * 109.46945 * 60.00645 * 14 12 10 40 40 H 1.09003 * 109.46967 * 180.02562 * 14 12 10 41 41 H 0.97003 * 119.99675 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.47273 * 324.53649 * 24 23 9 43 43 H 1.09002 * 109.47805 * 204.53493 * 24 23 9 44 44 H 1.08001 * 119.99961 * 177.04290 * 26 25 24 45 45 H 1.08001 * 120.00161 * 356.76685 * 26 25 24 46 46 H 1.08989 * 109.47066 * 275.00581 * 27 25 24 47 47 H 1.09000 * 109.46948 * 35.00809 * 27 25 24 48 48 H 1.08994 * 109.46804 * 155.00093 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.3500 -0.5108 5 6 4.6854 1.3510 -0.5102 6 6 5.1871 2.6802 -1.0126 7 7 5.3395 3.0270 -2.2592 8 7 5.7857 4.2302 -2.3307 9 6 5.9380 4.7215 -1.1236 10 7 6.3936 5.9901 -0.8020 11 6 7.7824 5.9457 -0.3252 12 6 6.2583 6.9035 -1.9445 13 1 6.8420 6.5248 -2.7835 14 6 4.7859 6.9989 -2.3496 15 6 6.7631 8.2698 -1.5581 16 1 7.1465 8.4423 -0.5633 17 6 6.7355 9.2996 -2.4744 18 7 6.2690 9.0893 -3.6860 19 14 7.3619 10.9930 -1.9956 20 1 8.7911 10.8996 -1.6039 21 1 7.2238 11.9166 -3.1502 22 1 6.5678 11.5092 -0.8518 23 7 5.5663 3.7462 -0.2447 24 6 5.5671 3.8266 1.2181 25 6 4.2848 4.4645 1.6869 26 6 3.2788 3.7139 2.0620 27 6 4.1597 5.9659 1.7241 28 1 -1.0502 -0.0003 0.0003 29 1 3.0097 -0.7947 -0.6505 30 1 3.0095 -0.1646 1.0142 31 1 2.7917 2.1455 0.1397 32 1 2.7919 1.5154 -1.5249 33 1 5.0494 0.5555 -1.1603 34 1 5.0484 1.1858 0.5043 35 1 8.4378 5.6452 -1.1426 36 1 8.0757 6.9329 0.0316 37 1 7.8640 5.2259 0.4893 38 1 4.4212 6.0105 -2.6292 39 1 4.2021 7.3777 -1.5106 40 1 4.6856 7.6763 -3.1977 41 1 6.2499 9.8137 -4.3308 42 1 6.4140 4.4281 1.5484 43 1 5.6484 2.8236 1.6372 44 1 2.3771 4.1702 2.4430 45 1 3.3494 2.6389 1.9861 46 1 4.5672 6.3412 2.6627 47 1 4.7124 6.3973 0.8896 48 1 3.1089 6.2449 1.6469 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909321716.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:30 Heat of formation + Delta-G solvation = 155.482473 kcal Electronic energy + Delta-G solvation = -27410.422322 eV Core-core repulsion = 23890.256241 eV Total energy + Delta-G solvation = -3520.166081 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.50741 -37.19821 -36.86089 -35.99102 -33.30686 -33.10154 -32.42870 -29.73426 -29.22928 -27.49053 -27.20293 -26.55329 -25.27494 -24.30352 -22.66214 -21.76688 -20.47898 -19.52739 -18.63362 -18.26036 -16.80668 -16.21363 -16.01936 -15.66697 -15.09024 -14.89558 -14.69427 -14.59020 -14.13399 -13.95762 -13.56233 -13.29877 -13.08775 -12.84894 -12.63733 -12.47488 -12.16316 -11.84877 -11.79614 -11.63220 -11.31440 -11.13073 -11.09089 -10.98355 -10.92224 -10.69927 -10.43425 -10.29312 -10.27387 -10.20974 -10.06368 -9.89309 -9.65735 -9.21476 -9.19176 -8.60045 -8.43972 -7.43735 -6.04177 -4.11967 1.85473 2.26042 2.64292 2.67008 2.91863 3.29032 3.34666 3.35667 3.42000 4.16161 4.32931 4.48305 4.54412 4.64310 4.67136 4.73023 5.03577 5.09091 5.15916 5.22741 5.25249 5.28972 5.39438 5.53475 5.64862 5.67135 5.78163 5.81977 5.84800 5.95886 5.99111 6.11209 6.12519 6.23434 6.28615 6.41822 6.49944 6.54422 6.82191 6.93002 6.98423 7.14763 7.25418 7.44863 7.45553 7.70833 7.74471 7.97123 8.25330 8.46068 8.90110 9.37412 9.52863 11.02147 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018961 B = 0.003470 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.398072 B = 8066.294301 C = 8318.846496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.184 4.184 3 C -0.011 4.011 4 C -0.116 4.116 5 C -0.021 4.021 6 C 0.151 3.849 7 N -0.285 5.285 8 N -0.316 5.316 9 C 0.386 3.614 10 N -0.459 5.459 11 C 0.043 3.957 12 C 0.230 3.770 13 H 0.024 0.976 14 C -0.133 4.133 15 C -0.517 4.517 16 H 0.064 0.936 17 C 0.065 3.935 18 N -0.884 5.884 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 N -0.476 5.476 24 C 0.148 3.852 25 C -0.129 4.129 26 C -0.183 4.183 27 C -0.131 4.131 28 H 0.215 0.785 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.032 0.968 36 H 0.093 0.907 37 H 0.042 0.958 38 H 0.021 0.979 39 H 0.025 0.975 40 H 0.088 0.912 41 H 0.263 0.737 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.065 0.935 47 H 0.099 0.901 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.844 -15.472 13.237 20.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.184 4.184 3 C -0.048 4.048 4 C -0.154 4.154 5 C -0.061 4.061 6 C -0.117 4.117 7 N -0.125 5.125 8 N -0.159 5.159 9 C 0.030 3.970 10 N -0.185 5.185 11 C -0.105 4.105 12 C 0.126 3.874 13 H 0.042 0.958 14 C -0.191 4.191 15 C -0.555 4.555 16 H 0.082 0.918 17 C -0.138 4.138 18 N -0.521 5.521 19 Si 0.727 3.273 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 N -0.172 5.172 24 C 0.025 3.975 25 C -0.130 4.130 26 C -0.221 4.221 27 C -0.188 4.188 28 H 0.232 0.768 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.051 0.949 36 H 0.112 0.888 37 H 0.061 0.939 38 H 0.040 0.960 39 H 0.044 0.956 40 H 0.107 0.893 41 H 0.073 0.927 42 H 0.118 0.882 43 H 0.110 0.890 44 H 0.120 0.880 45 H 0.116 0.884 46 H 0.083 0.917 47 H 0.118 0.882 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.101 -15.224 11.896 19.983 hybrid contribution 0.383 0.882 1.121 1.477 sum -4.718 -14.341 13.017 19.934 Atomic orbital electron populations 1.24906 0.96006 1.00849 1.01285 1.23102 0.94567 1.00420 1.00271 1.18736 0.84828 0.98661 1.02543 1.21632 0.93890 0.96502 1.03382 1.19864 0.95157 0.89838 1.01251 1.24380 1.06420 0.92373 0.88481 1.73941 1.15854 1.07155 1.15533 1.74809 1.20615 1.02616 1.17900 1.23057 0.99787 0.89294 0.84837 1.59200 1.20238 0.99988 1.39072 1.22288 0.86845 1.02935 0.98393 1.19326 0.95006 0.88563 0.84466 0.95811 1.21816 0.96390 0.99387 1.01489 1.21012 1.42182 0.93536 0.98785 0.91804 1.24892 0.95207 0.98873 0.94849 1.69913 1.45257 1.32644 1.04321 0.86554 0.79248 0.83614 0.77929 1.20276 1.21272 1.20223 1.46277 1.50893 1.12681 1.07363 1.20795 0.98041 1.01860 0.76830 1.21944 0.95132 0.97306 0.98644 1.23800 0.97979 0.99487 1.00795 1.21026 1.02768 0.91071 1.03934 0.76780 0.89227 0.89597 0.90887 0.90438 0.88546 0.90528 0.94917 0.88834 0.93881 0.96005 0.95606 0.89325 0.92687 0.88175 0.88967 0.88000 0.88413 0.91658 0.88224 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.01 19.25 29.55 0.57 -1.44 16 2 C -0.18 -1.85 13.34 -37.12 -0.50 -2.35 16 3 C -0.01 -0.09 5.70 -29.52 -0.17 -0.26 16 4 C -0.12 -1.18 5.15 -26.73 -0.14 -1.31 16 5 C -0.02 -0.22 5.64 -27.88 -0.16 -0.38 16 6 C 0.15 2.40 7.32 -154.01 -1.13 1.27 16 7 N -0.29 -5.83 12.18 32.99 0.40 -5.42 16 8 N -0.32 -7.29 9.96 30.31 0.30 -6.99 16 9 C 0.39 7.89 6.05 -318.89 -1.93 5.96 16 10 N -0.46 -9.66 3.28 -176.08 -0.58 -10.23 16 11 C 0.04 0.78 9.09 60.07 0.55 1.33 16 12 C 0.23 5.85 1.73 -68.86 -0.12 5.73 16 13 H 0.02 0.70 7.92 -51.93 -0.41 0.29 16 14 C -0.13 -3.44 8.80 37.16 0.33 -3.11 16 15 C -0.52 -13.58 7.96 -34.44 -0.27 -13.85 16 16 H 0.06 1.61 6.39 -52.49 -0.34 1.27 16 17 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 18 N -0.88 -25.18 11.32 55.43 0.63 -24.55 16 19 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 N -0.48 -7.69 2.79 -115.37 -0.32 -8.01 16 24 C 0.15 1.79 6.21 -5.19 -0.03 1.75 16 25 C -0.13 -1.59 5.64 -101.06 -0.57 -2.16 16 26 C -0.18 -1.91 12.83 29.01 0.37 -1.53 16 27 C -0.13 -1.82 10.05 36.01 0.36 -1.46 16 28 H 0.22 1.33 7.80 -54.08 -0.42 0.91 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.81 5.85 -51.93 -0.30 0.51 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.58 7.02 -51.93 -0.36 0.22 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 1.71 6.34 -51.93 -0.33 1.38 16 37 H 0.04 0.64 6.47 -51.93 -0.34 0.31 16 38 H 0.02 0.55 6.20 -51.93 -0.32 0.23 16 39 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 42 H 0.10 1.19 6.48 -51.93 -0.34 0.85 16 43 H 0.09 0.82 6.85 -51.93 -0.36 0.46 16 44 H 0.10 1.01 8.01 -52.49 -0.42 0.59 16 45 H 0.10 0.86 6.94 -52.49 -0.36 0.50 16 46 H 0.06 0.79 8.14 -51.94 -0.42 0.36 16 47 H 0.10 1.74 6.71 -51.93 -0.35 1.39 16 48 H 0.06 0.79 8.00 -51.93 -0.42 0.38 16 LS Contribution 388.79 15.07 5.86 5.86 Total: -1.00 -32.33 388.79 -9.13 -41.47 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.47 Total: 2.31 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -2.93 Total: -10.15 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 0.43 Total: -55.20 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.33 -9.13 -41.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909321716.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.949 kcal (2) G-P(sol) polarization free energy of solvation -32.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds