Wall clock time and date at job start Tue Mar 31 2020 11:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46879 * 159.26405 * 3 2 1 5 5 C 1.53001 * 109.47109 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47436 * 180.02562 * 5 4 3 7 7 N 1.30289 * 126.35129 * 276.11344 * 6 5 4 8 8 N 1.28524 * 110.05851 * 179.97438 * 7 6 5 9 9 C 1.31213 * 109.85759 * 359.73993 * 8 7 6 10 10 N 1.38579 * 126.47114 * 180.26049 * 9 8 7 11 11 C 1.46906 * 111.00153 * 255.81374 * 10 9 8 12 12 C 1.46895 * 111.00466 * 19.76781 * 10 9 8 13 13 H 1.08999 * 109.47208 * 300.00408 * 12 10 9 14 14 C 1.53003 * 109.46924 * 59.99769 * 12 10 9 15 15 C 1.50704 * 109.47660 * 180.02562 * 12 10 9 16 16 H 1.07995 * 119.99244 * 0.02562 * 15 12 10 17 17 C 1.37871 * 120.00166 * 180.02562 * 15 12 10 18 18 N 1.31514 * 119.99916 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 120.00129 * 180.02562 * 17 15 12 20 20 H 1.48493 * 109.47181 * 59.99340 * 19 17 15 21 21 H 1.48497 * 109.47250 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46665 * 299.99815 * 19 17 15 23 23 N 1.36450 * 107.05709 * 0.40468 * 9 8 7 24 24 C 1.46493 * 127.14080 * 179.87398 * 23 9 8 25 25 C 1.50706 * 109.47118 * 84.53050 * 24 23 9 26 26 C 1.31002 * 119.99457 * 96.14411 * 25 24 23 27 27 C 1.50699 * 120.00393 * 276.14165 * 25 24 23 28 28 H 4.44647 * 5.63391 * 180.02562 * 4 1 2 29 29 H 1.08995 * 109.47355 * 39.27383 * 3 2 1 30 30 H 1.08993 * 109.47402 * 279.26279 * 3 2 1 31 31 H 1.09005 * 109.46874 * 60.00284 * 4 3 2 32 32 H 1.08996 * 109.47674 * 300.00419 * 4 3 2 33 33 H 1.08998 * 109.47077 * 59.99995 * 5 4 3 34 34 H 1.09005 * 109.47059 * 300.00619 * 5 4 3 35 35 H 1.09001 * 109.47162 * 66.69330 * 11 10 9 36 36 H 1.08993 * 109.47175 * 186.69660 * 11 10 9 37 37 H 1.09003 * 109.47069 * 306.69975 * 11 10 9 38 38 H 1.08999 * 109.47131 * 300.00624 * 14 12 10 39 39 H 1.09005 * 109.46945 * 60.00645 * 14 12 10 40 40 H 1.09003 * 109.46967 * 180.02562 * 14 12 10 41 41 H 0.97003 * 119.99675 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.47273 * 324.53649 * 24 23 9 43 43 H 1.09002 * 109.47805 * 204.53493 * 24 23 9 44 44 H 1.08001 * 119.99961 * 177.04290 * 26 25 24 45 45 H 1.08001 * 120.00161 * 356.76685 * 26 25 24 46 46 H 1.08989 * 109.47066 * 275.00581 * 27 25 24 47 47 H 1.09000 * 109.46948 * 35.00809 * 27 25 24 48 48 H 1.08994 * 109.46804 * 155.00093 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.3500 -0.5108 5 6 4.6854 1.3510 -0.5102 6 6 5.1871 2.6802 -1.0126 7 7 5.3395 3.0270 -2.2592 8 7 5.7857 4.2302 -2.3307 9 6 5.9380 4.7215 -1.1236 10 7 6.3936 5.9901 -0.8020 11 6 7.7824 5.9457 -0.3252 12 6 6.2583 6.9035 -1.9445 13 1 6.8420 6.5248 -2.7835 14 6 4.7859 6.9989 -2.3496 15 6 6.7631 8.2698 -1.5581 16 1 7.1465 8.4423 -0.5633 17 6 6.7355 9.2996 -2.4744 18 7 6.2690 9.0893 -3.6860 19 14 7.3619 10.9930 -1.9956 20 1 8.7911 10.8996 -1.6039 21 1 7.2238 11.9166 -3.1502 22 1 6.5678 11.5092 -0.8518 23 7 5.5663 3.7462 -0.2447 24 6 5.5671 3.8266 1.2181 25 6 4.2848 4.4645 1.6869 26 6 3.2788 3.7139 2.0620 27 6 4.1597 5.9659 1.7241 28 1 -1.0502 -0.0003 0.0003 29 1 3.0097 -0.7947 -0.6505 30 1 3.0095 -0.1646 1.0142 31 1 2.7917 2.1455 0.1397 32 1 2.7919 1.5154 -1.5249 33 1 5.0494 0.5555 -1.1603 34 1 5.0484 1.1858 0.5043 35 1 8.4378 5.6452 -1.1426 36 1 8.0757 6.9329 0.0316 37 1 7.8640 5.2259 0.4893 38 1 4.4212 6.0105 -2.6292 39 1 4.2021 7.3777 -1.5106 40 1 4.6856 7.6763 -3.1977 41 1 6.2499 9.8137 -4.3308 42 1 6.4140 4.4281 1.5484 43 1 5.6484 2.8236 1.6372 44 1 2.3771 4.1702 2.4430 45 1 3.3494 2.6389 1.9861 46 1 4.5672 6.3412 2.6627 47 1 4.7124 6.3973 0.8896 48 1 3.1089 6.2449 1.6469 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909321716.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:30 Heat of formation + Delta-G solvation = 139.506709 kcal Electronic energy + Delta-G solvation = -27411.115083 eV Core-core repulsion = 23890.256241 eV Total energy + Delta-G solvation = -3520.858842 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.91389 -38.87674 -37.88535 -36.82636 -34.94886 -34.38827 -33.52763 -31.27152 -30.83496 -28.65492 -28.24173 -27.57036 -27.11314 -25.98357 -23.75612 -23.34113 -21.69081 -21.08173 -19.67965 -18.93523 -18.45032 -17.76194 -17.41041 -17.02058 -16.48116 -16.05999 -15.91636 -15.69014 -15.44843 -15.01382 -14.96382 -14.59582 -14.28527 -14.01865 -13.79200 -13.66872 -13.47067 -13.20287 -12.95704 -12.78160 -12.76888 -12.67377 -12.62528 -12.41496 -12.25265 -12.16836 -12.12432 -12.00588 -11.92703 -11.41308 -11.11889 -11.05002 -10.94135 -10.90865 -10.56211 -10.26170 -10.09818 -9.09549 -8.11938 -6.27202 0.78471 1.03206 1.44745 1.47453 1.54702 1.70945 1.89095 1.98190 2.00567 2.42670 3.05796 3.20082 3.43076 3.59511 3.64921 3.75598 3.92589 4.07637 4.20546 4.27974 4.34549 4.35529 4.48248 4.54722 4.63724 4.68961 4.74520 4.80332 4.82337 4.85623 4.89285 4.94491 4.97246 5.03052 5.07209 5.16679 5.24907 5.27759 5.31244 5.34160 5.44053 5.60309 5.61953 5.66912 5.86381 5.95528 6.04382 6.17478 6.64535 6.77456 6.83499 7.41855 7.92433 8.94921 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018961 B = 0.003470 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.398072 B = 8066.294301 C = 8318.846496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.211 4.211 3 C -0.005 4.005 4 C -0.106 4.106 5 C -0.020 4.020 6 C 0.178 3.822 7 N -0.335 5.335 8 N -0.371 5.371 9 C 0.368 3.632 10 N -0.451 5.451 11 C 0.044 3.956 12 C 0.245 3.755 13 H -0.026 1.026 14 C -0.113 4.113 15 C -0.524 4.524 16 H 0.076 0.924 17 C 0.012 3.988 18 N -0.921 5.921 19 Si 0.968 3.032 20 H -0.266 1.266 21 H -0.289 1.289 22 H -0.267 1.267 23 N -0.467 5.467 24 C 0.140 3.860 25 C -0.155 4.155 26 C -0.158 4.158 27 C -0.129 4.129 28 H 0.236 0.764 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.112 0.888 34 H 0.121 0.879 35 H 0.012 0.988 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.013 0.987 39 H 0.026 0.974 40 H 0.061 0.939 41 H 0.262 0.738 42 H 0.102 0.898 43 H 0.138 0.862 44 H 0.106 0.894 45 H 0.124 0.876 46 H 0.079 0.921 47 H 0.060 0.940 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.907 -17.356 16.891 24.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.211 4.211 3 C -0.042 4.042 4 C -0.145 4.145 5 C -0.059 4.059 6 C -0.090 4.090 7 N -0.174 5.174 8 N -0.214 5.214 9 C 0.010 3.990 10 N -0.176 5.176 11 C -0.103 4.103 12 C 0.139 3.861 13 H -0.008 1.008 14 C -0.171 4.171 15 C -0.562 4.562 16 H 0.094 0.906 17 C -0.188 4.188 18 N -0.560 5.560 19 Si 0.793 3.207 20 H -0.191 1.191 21 H -0.215 1.215 22 H -0.192 1.192 23 N -0.161 5.161 24 C 0.020 3.980 25 C -0.156 4.156 26 C -0.195 4.195 27 C -0.186 4.186 28 H 0.252 0.748 29 H 0.122 0.878 30 H 0.134 0.866 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.130 0.870 34 H 0.139 0.861 35 H 0.031 0.969 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.032 0.968 39 H 0.045 0.955 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.121 0.879 43 H 0.155 0.845 44 H 0.124 0.876 45 H 0.142 0.858 46 H 0.097 0.903 47 H 0.079 0.921 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.161 -17.135 15.589 23.733 hybrid contribution 0.286 1.319 0.034 1.350 sum -4.875 -15.816 15.623 22.759 Atomic orbital electron populations 1.25668 0.97110 1.00294 1.01081 1.23774 0.95735 1.00950 1.00631 1.18797 0.83622 0.97274 1.04467 1.21487 0.93534 0.97925 1.01571 1.20227 0.95096 0.86761 1.03861 1.25467 1.02662 0.93576 0.87330 1.73834 1.18473 1.06664 1.18425 1.74666 1.22269 1.04293 1.20217 1.22911 1.00819 0.89757 0.85477 1.59096 1.21653 1.00212 1.36645 1.22353 0.85136 1.04032 0.98751 1.18874 0.93322 0.89370 0.84533 1.00798 1.21563 0.97249 0.98050 1.00241 1.21332 1.41792 0.93890 0.99211 0.90638 1.25800 0.95334 1.02962 0.94655 1.70085 1.46616 1.33751 1.05544 0.85454 0.79145 0.78510 0.77576 1.19076 1.21518 1.19215 1.46490 1.49653 1.11224 1.08777 1.21219 0.98168 1.04584 0.74063 1.21821 0.96239 0.96305 1.01256 1.24060 0.96956 1.00734 0.97793 1.20928 1.01811 0.92784 1.03052 0.74776 0.87820 0.86563 0.91646 0.93561 0.86970 0.86108 0.96882 0.88909 0.89905 0.96788 0.95528 0.92026 0.92873 0.87944 0.84460 0.87591 0.85831 0.90278 0.92066 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.78 19.25 74.32 1.43 -2.35 16 2 C -0.21 -3.72 13.34 31.12 0.42 -3.30 16 3 C -0.01 -0.06 5.70 28.79 0.16 0.10 16 4 C -0.11 -1.85 5.15 30.60 0.16 -1.70 16 5 C -0.02 -0.34 5.64 29.85 0.17 -0.17 16 6 C 0.18 5.40 7.32 137.64 1.01 6.41 16 7 N -0.34 -14.01 12.18 -49.54 -0.60 -14.61 16 8 N -0.37 -17.96 9.96 -58.01 -0.58 -18.54 16 9 C 0.37 15.36 6.05 260.12 1.57 16.93 16 10 N -0.45 -19.49 3.28 -711.00 -2.33 -21.82 16 11 C 0.04 1.63 9.09 127.69 1.16 2.79 16 12 C 0.24 13.09 1.73 44.17 0.08 13.17 16 13 H -0.03 -1.61 7.92 -2.39 -0.02 -1.62 16 14 C -0.11 -6.20 8.80 71.98 0.63 -5.57 16 15 C -0.52 -28.28 7.96 25.60 0.20 -28.08 16 16 H 0.08 3.82 6.39 -2.91 -0.02 3.80 16 17 C 0.01 0.65 5.30 84.65 0.45 1.10 16 18 N -0.92 -54.76 11.32 21.44 0.24 -54.52 16 19 Si 0.97 43.00 29.54 68.60 2.03 45.03 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 21 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 23 N -0.47 -14.34 2.79 -518.92 -1.45 -15.79 16 24 C 0.14 2.90 6.21 85.64 0.53 3.43 16 25 C -0.16 -3.37 5.64 -16.49 -0.09 -3.46 16 26 C -0.16 -2.65 12.83 67.78 0.87 -1.78 16 27 C -0.13 -3.45 10.05 71.24 0.72 -2.73 16 28 H 0.24 2.45 7.80 -4.41 -0.03 2.41 16 29 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 1.23 5.85 -2.38 -0.01 1.22 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.12 1.02 7.02 -2.38 -0.02 1.01 16 35 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.09 3.38 6.34 -2.39 -0.02 3.37 16 37 H 0.08 2.34 6.47 -2.39 -0.02 2.33 16 38 H 0.01 0.74 6.20 -2.39 -0.01 0.73 16 39 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 40 H 0.06 3.70 6.07 -2.39 -0.01 3.68 16 41 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 42 H 0.10 2.09 6.48 -2.39 -0.02 2.07 16 43 H 0.14 1.59 6.85 -2.39 -0.02 1.57 16 44 H 0.11 1.73 8.01 -2.91 -0.02 1.70 16 45 H 0.12 1.45 6.94 -2.91 -0.02 1.43 16 46 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.06 2.14 6.71 -2.39 -0.02 2.12 16 48 H 0.05 1.41 8.00 -2.39 -0.02 1.39 16 Total: -1.00 -77.32 388.79 7.71 -69.61 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.94 Total: 15.85 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: 9.47 Total: -5.22 kcal Atomic # 7 Polarization: -120.55 SS G_CDS: -4.72 Total: -125.27 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -77.32 7.71 -69.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909321716.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.118 kcal (2) G-P(sol) polarization free energy of solvation -77.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds