Wall clock time and date at job start Tue Mar 31 2020 11:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47034 * 275.03657 * 3 2 1 5 5 C 1.53005 * 109.46823 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.46964 * 179.97438 * 5 4 3 7 7 N 1.30294 * 126.34538 * 269.69508 * 6 5 4 8 8 N 1.28528 * 110.04748 * 179.82452 * 7 6 5 9 9 C 1.31213 * 109.86492 * 0.44325 * 8 7 6 10 10 N 1.38583 * 126.47592 * 179.73265 * 9 8 7 11 11 C 1.46891 * 111.00040 * 57.08309 * 10 9 8 12 12 C 1.46897 * 110.99973 * 293.12562 * 10 9 8 13 13 H 1.09000 * 109.47316 * 310.00297 * 12 10 9 14 14 C 1.53002 * 109.46776 * 70.00208 * 12 10 9 15 15 C 1.50695 * 109.47467 * 189.99788 * 12 10 9 16 16 H 1.08004 * 119.99440 * 0.02562 * 15 12 10 17 17 C 1.37880 * 120.00496 * 180.02562 * 15 12 10 18 18 N 1.31514 * 119.99499 * 0.02562 * 17 15 12 19 19 Si 1.86796 * 119.99946 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47322 * 60.00024 * 19 17 15 21 21 H 1.48502 * 109.46994 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47134 * 299.99940 * 19 17 15 23 23 N 1.36458 * 107.04984 * 359.73624 * 9 8 7 24 24 C 1.46503 * 127.13124 * 179.97438 * 23 9 8 25 25 C 1.53000 * 109.47171 * 267.47109 * 24 23 9 26 26 C 1.53000 * 117.49689 * 243.62783 * 25 24 23 27 27 C 1.52999 * 60.00032 * 252.50663 * 26 25 24 28 28 H 4.44646 * 5.63421 * 179.97438 * 4 1 2 29 29 H 1.09003 * 109.46986 * 155.03820 * 3 2 1 30 30 H 1.08996 * 109.47530 * 35.04377 * 3 2 1 31 31 H 1.08994 * 109.47261 * 300.00257 * 4 3 2 32 32 H 1.08994 * 109.46932 * 60.00464 * 4 3 2 33 33 H 1.08994 * 109.47279 * 300.00083 * 5 4 3 34 34 H 1.09008 * 109.47025 * 60.00572 * 5 4 3 35 35 H 1.09002 * 109.47185 * 67.73893 * 11 10 9 36 36 H 1.08997 * 109.47546 * 187.73910 * 11 10 9 37 37 H 1.09005 * 109.47247 * 307.73949 * 11 10 9 38 38 H 1.08991 * 109.47380 * 59.99866 * 14 12 10 39 39 H 1.09003 * 109.47238 * 179.97438 * 14 12 10 40 40 H 1.09001 * 109.47052 * 299.99353 * 14 12 10 41 41 H 0.97003 * 119.99633 * 179.97438 * 18 17 15 42 42 H 1.08992 * 109.47420 * 27.47496 * 24 23 9 43 43 H 1.08999 * 109.46700 * 147.47434 * 24 23 9 44 44 H 1.09002 * 115.54828 * 29.33509 * 25 24 23 45 45 H 1.08999 * 117.50450 * 359.97438 * 26 25 24 46 46 H 1.09003 * 117.49837 * 145.02267 * 26 25 24 47 47 H 1.08999 * 117.50718 * 252.51265 * 27 26 25 48 48 H 1.08999 * 117.49626 * 107.48975 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1560 -0.1258 1.4369 5 6 4.6861 -0.1244 1.4369 6 6 5.1885 -0.2483 2.8524 7 7 5.4503 0.7338 3.6676 8 7 5.8565 0.2730 4.7965 9 6 5.8849 -1.0383 4.7586 10 7 6.2735 -1.8840 5.7855 11 6 5.4702 -1.6497 6.9928 12 6 7.7073 -1.7410 6.0712 13 1 8.2719 -1.8130 5.1416 14 6 7.9646 -0.3795 6.7201 15 6 8.1440 -2.8355 7.0103 16 1 7.4281 -3.5648 7.3597 17 6 9.4575 -2.9061 7.4236 18 7 10.3291 -2.0177 6.9985 19 14 9.9989 -4.2634 8.5872 20 1 9.7498 -5.5846 7.9567 21 1 11.4481 -4.1180 8.8771 22 1 9.2292 -4.1661 9.8534 23 7 5.4596 -1.4120 3.5171 24 6 5.3225 -2.7770 3.0029 25 6 6.6130 -3.1853 2.2896 26 6 6.5298 -3.4746 0.7895 27 6 6.7142 -4.6249 1.7814 28 1 -1.0500 0.0002 0.0001 29 1 3.0089 0.9325 -0.4337 30 1 3.0097 -0.8405 -0.5900 31 1 2.7923 0.7154 2.0269 32 1 2.7931 -1.0576 1.8706 33 1 5.0501 -0.9654 0.8469 34 1 5.0486 0.8077 1.0034 35 1 4.4415 -1.9611 6.8109 36 1 5.8828 -2.2255 7.8212 37 1 5.4899 -0.5888 7.2422 38 1 7.4000 -0.3074 7.6496 39 1 9.0285 -0.2735 6.9325 40 1 7.6488 0.4123 6.0407 41 1 11.2532 -2.0671 7.2896 42 1 5.1334 -3.4599 3.8310 43 1 4.4902 -2.8186 2.3003 44 1 7.5244 -2.7180 2.6626 45 1 5.5557 -3.3746 0.3108 46 1 7.3866 -3.1976 0.1752 47 1 7.6922 -5.1046 1.8198 48 1 5.8614 -5.2811 1.9552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000910429180.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:23 Heat of formation + Delta-G solvation = 160.023275 kcal Electronic energy + Delta-G solvation = -27036.406130 eV Core-core repulsion = 23516.436953 eV Total energy + Delta-G solvation = -3519.969177 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.49717 -37.71551 -37.27411 -36.18106 -34.00318 -33.09925 -32.54166 -29.84087 -28.68408 -27.48084 -26.80215 -25.31033 -25.06901 -22.69126 -22.44320 -21.58559 -21.04271 -20.23589 -19.31208 -18.33306 -16.90461 -16.36569 -15.92782 -15.62539 -15.40187 -14.88761 -14.79131 -14.60108 -14.27406 -13.98281 -13.61441 -13.21501 -12.94370 -12.86396 -12.61523 -12.28039 -11.97547 -11.75174 -11.60637 -11.50611 -11.29900 -11.19711 -11.19137 -10.91418 -10.77025 -10.57916 -10.51681 -10.45292 -10.32491 -10.22166 -10.12096 -10.04518 -9.84136 -9.62785 -8.90919 -8.45051 -8.39500 -7.70089 -6.06539 -4.12657 2.17843 2.57099 2.61692 2.72060 3.28563 3.33536 3.34230 3.37300 3.71658 4.10644 4.32638 4.44580 4.55981 4.68126 4.69836 4.77138 4.93819 4.99932 5.03075 5.12839 5.22082 5.25230 5.36233 5.45504 5.50024 5.52998 5.56057 5.76522 5.79000 5.82325 5.83882 6.01286 6.03198 6.05214 6.20248 6.28044 6.38026 6.51221 6.62532 6.84379 7.07758 7.08395 7.20039 7.39224 7.53257 7.66002 7.77012 7.96226 8.26982 8.48461 8.90501 9.29151 9.51885 11.00065 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017209 B = 0.003484 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.701167 B = 8034.685248 C = 8854.926398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.183 4.183 3 C -0.012 4.012 4 C -0.109 4.109 5 C -0.025 4.025 6 C 0.160 3.840 7 N -0.293 5.293 8 N -0.315 5.315 9 C 0.378 3.622 10 N -0.470 5.470 11 C 0.045 3.955 12 C 0.229 3.771 13 H 0.034 0.966 14 C -0.175 4.175 15 C -0.506 4.506 16 H 0.064 0.936 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.900 3.100 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.276 1.276 23 N -0.465 5.465 24 C 0.148 3.852 25 C -0.166 4.166 26 C -0.182 4.182 27 C -0.164 4.164 28 H 0.215 0.785 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.043 0.957 36 H 0.089 0.911 37 H 0.039 0.961 38 H 0.031 0.969 39 H 0.086 0.914 40 H 0.036 0.964 41 H 0.262 0.738 42 H 0.106 0.894 43 H 0.086 0.914 44 H 0.114 0.886 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.099 0.901 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.440 -1.834 -14.588 19.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.183 4.183 3 C -0.049 4.049 4 C -0.148 4.148 5 C -0.065 4.065 6 C -0.107 4.107 7 N -0.133 5.133 8 N -0.158 5.158 9 C 0.022 3.978 10 N -0.196 5.196 11 C -0.103 4.103 12 C 0.125 3.875 13 H 0.052 0.948 14 C -0.234 4.234 15 C -0.545 4.545 16 H 0.082 0.918 17 C -0.140 4.140 18 N -0.527 5.527 19 Si 0.728 3.272 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 N -0.159 5.159 24 C 0.025 3.975 25 C -0.185 4.185 26 C -0.219 4.219 27 C -0.201 4.201 28 H 0.232 0.768 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.062 0.938 36 H 0.108 0.892 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.104 0.896 40 H 0.054 0.946 41 H 0.072 0.928 42 H 0.125 0.875 43 H 0.104 0.896 44 H 0.132 0.868 45 H 0.112 0.888 46 H 0.113 0.887 47 H 0.117 0.883 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.152 -0.876 -14.170 19.353 hybrid contribution 0.324 -1.367 0.463 1.479 sum -12.828 -2.243 -13.707 18.907 Atomic orbital electron populations 1.24906 0.96009 1.01452 1.00811 1.23141 0.94602 1.00187 1.00412 1.18749 0.84715 1.03628 0.97791 1.21524 0.94061 1.03467 0.95728 1.19921 0.94771 1.04453 0.87354 1.24411 1.06142 0.82094 0.98065 1.73942 1.15554 1.25616 0.98190 1.74732 1.19765 1.06360 1.14977 1.22923 0.98614 0.89318 0.86977 1.59391 1.09079 1.46441 1.04709 1.22243 0.95282 1.00842 0.91911 1.19344 0.77556 0.94256 0.96387 0.94829 1.22457 1.04209 0.97650 0.99093 1.20955 0.94435 1.11556 1.27520 0.91762 1.24904 0.96467 0.96178 0.96441 1.69904 1.03521 1.34780 1.44536 0.86534 0.77456 0.82078 0.81171 1.20237 1.21337 1.20200 1.46319 1.49755 1.07754 1.12031 1.21301 0.96312 0.80372 0.99506 1.22586 0.99660 1.00348 0.95890 1.23098 1.03009 1.03746 0.92008 1.22908 1.03640 0.90738 1.02840 0.76770 0.89086 0.89406 0.90564 0.91670 0.89907 0.88369 0.93780 0.89222 0.94223 0.95029 0.89573 0.94553 0.92770 0.87545 0.89585 0.86825 0.88783 0.88694 0.88266 0.88548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.88 19.25 29.55 0.57 -1.31 16 2 C -0.18 -1.74 13.34 -37.12 -0.50 -2.24 16 3 C -0.01 -0.09 5.70 -29.52 -0.17 -0.26 16 4 C -0.11 -1.02 5.15 -26.73 -0.14 -1.16 16 5 C -0.03 -0.26 5.47 -27.88 -0.15 -0.42 16 6 C 0.16 2.57 7.32 -154.02 -1.13 1.44 16 7 N -0.29 -5.86 12.18 32.99 0.40 -5.46 16 8 N -0.32 -7.02 9.81 30.32 0.30 -6.73 16 9 C 0.38 7.83 6.26 -318.87 -2.00 5.84 16 10 N -0.47 -10.21 4.73 -176.09 -0.83 -11.04 16 11 C 0.04 0.90 8.49 60.06 0.51 1.41 16 12 C 0.23 5.78 2.28 -68.87 -0.16 5.62 16 13 H 0.03 0.95 8.05 -51.93 -0.42 0.54 16 14 C -0.17 -4.48 8.18 37.16 0.30 -4.17 16 15 C -0.51 -13.38 7.80 -34.44 -0.27 -13.65 16 16 H 0.06 1.67 7.20 -52.48 -0.38 1.29 16 17 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 18 N -0.89 -25.09 11.32 55.43 0.63 -24.46 16 19 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 N -0.47 -7.81 2.81 -114.08 -0.32 -8.13 16 24 C 0.15 1.95 6.15 -4.04 -0.02 1.92 16 25 C -0.17 -2.16 6.01 -90.62 -0.54 -2.70 16 26 C -0.18 -1.75 10.18 -26.73 -0.27 -2.03 16 27 C -0.16 -1.75 10.25 -26.73 -0.27 -2.02 16 28 H 0.22 1.18 7.80 -54.09 -0.42 0.76 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.71 7.98 -51.93 -0.41 0.29 16 34 H 0.10 0.95 8.14 -51.92 -0.42 0.53 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 1.82 6.62 -51.93 -0.34 1.48 16 37 H 0.04 0.82 6.67 -51.93 -0.35 0.47 16 38 H 0.03 0.77 6.59 -51.93 -0.34 0.43 16 39 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 40 H 0.04 0.92 6.01 -51.93 -0.31 0.61 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.09 0.86 7.73 -51.93 -0.40 0.45 16 44 H 0.11 1.91 8.14 -51.93 -0.42 1.49 16 45 H 0.09 0.72 8.03 -51.93 -0.42 0.30 16 46 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 395.47 15.07 5.96 5.96 Total: -1.00 -31.83 395.47 -11.12 -42.94 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -7.90 Total: 3.30 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -4.33 Total: -12.16 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.17 Total: -55.82 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.83 -11.12 -42.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910429180.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.967 kcal (2) G-P(sol) polarization free energy of solvation -31.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds