Wall clock time and date at job start Tue Mar 31 2020 11:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47034 * 275.03657 * 3 2 1 5 5 C 1.53005 * 109.46823 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.46964 * 179.97438 * 5 4 3 7 7 N 1.30294 * 126.34538 * 269.69508 * 6 5 4 8 8 N 1.28528 * 110.04748 * 179.82452 * 7 6 5 9 9 C 1.31213 * 109.86492 * 0.44325 * 8 7 6 10 10 N 1.38583 * 126.47592 * 179.73265 * 9 8 7 11 11 C 1.46891 * 111.00040 * 57.08309 * 10 9 8 12 12 C 1.46897 * 110.99973 * 293.12562 * 10 9 8 13 13 H 1.09000 * 109.47316 * 310.00297 * 12 10 9 14 14 C 1.53002 * 109.46776 * 70.00208 * 12 10 9 15 15 C 1.50695 * 109.47467 * 189.99788 * 12 10 9 16 16 H 1.08004 * 119.99440 * 0.02562 * 15 12 10 17 17 C 1.37880 * 120.00496 * 180.02562 * 15 12 10 18 18 N 1.31514 * 119.99499 * 0.02562 * 17 15 12 19 19 Si 1.86796 * 119.99946 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47322 * 60.00024 * 19 17 15 21 21 H 1.48502 * 109.46994 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47134 * 299.99940 * 19 17 15 23 23 N 1.36458 * 107.04984 * 359.73624 * 9 8 7 24 24 C 1.46503 * 127.13124 * 179.97438 * 23 9 8 25 25 C 1.53000 * 109.47171 * 267.47109 * 24 23 9 26 26 C 1.53000 * 117.49689 * 243.62783 * 25 24 23 27 27 C 1.52999 * 60.00032 * 252.50663 * 26 25 24 28 28 H 4.44646 * 5.63421 * 179.97438 * 4 1 2 29 29 H 1.09003 * 109.46986 * 155.03820 * 3 2 1 30 30 H 1.08996 * 109.47530 * 35.04377 * 3 2 1 31 31 H 1.08994 * 109.47261 * 300.00257 * 4 3 2 32 32 H 1.08994 * 109.46932 * 60.00464 * 4 3 2 33 33 H 1.08994 * 109.47279 * 300.00083 * 5 4 3 34 34 H 1.09008 * 109.47025 * 60.00572 * 5 4 3 35 35 H 1.09002 * 109.47185 * 67.73893 * 11 10 9 36 36 H 1.08997 * 109.47546 * 187.73910 * 11 10 9 37 37 H 1.09005 * 109.47247 * 307.73949 * 11 10 9 38 38 H 1.08991 * 109.47380 * 59.99866 * 14 12 10 39 39 H 1.09003 * 109.47238 * 179.97438 * 14 12 10 40 40 H 1.09001 * 109.47052 * 299.99353 * 14 12 10 41 41 H 0.97003 * 119.99633 * 179.97438 * 18 17 15 42 42 H 1.08992 * 109.47420 * 27.47496 * 24 23 9 43 43 H 1.08999 * 109.46700 * 147.47434 * 24 23 9 44 44 H 1.09002 * 115.54828 * 29.33509 * 25 24 23 45 45 H 1.08999 * 117.50450 * 359.97438 * 26 25 24 46 46 H 1.09003 * 117.49837 * 145.02267 * 26 25 24 47 47 H 1.08999 * 117.50718 * 252.51265 * 27 26 25 48 48 H 1.08999 * 117.49626 * 107.48975 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1560 -0.1258 1.4369 5 6 4.6861 -0.1244 1.4369 6 6 5.1885 -0.2483 2.8524 7 7 5.4503 0.7338 3.6676 8 7 5.8565 0.2730 4.7965 9 6 5.8849 -1.0383 4.7586 10 7 6.2735 -1.8840 5.7855 11 6 5.4702 -1.6497 6.9928 12 6 7.7073 -1.7410 6.0712 13 1 8.2719 -1.8130 5.1416 14 6 7.9646 -0.3795 6.7201 15 6 8.1440 -2.8355 7.0103 16 1 7.4281 -3.5648 7.3597 17 6 9.4575 -2.9061 7.4236 18 7 10.3291 -2.0177 6.9985 19 14 9.9989 -4.2634 8.5872 20 1 9.7498 -5.5846 7.9567 21 1 11.4481 -4.1180 8.8771 22 1 9.2292 -4.1661 9.8534 23 7 5.4596 -1.4120 3.5171 24 6 5.3225 -2.7770 3.0029 25 6 6.6130 -3.1853 2.2896 26 6 6.5298 -3.4746 0.7895 27 6 6.7142 -4.6249 1.7814 28 1 -1.0500 0.0002 0.0001 29 1 3.0089 0.9325 -0.4337 30 1 3.0097 -0.8405 -0.5900 31 1 2.7923 0.7154 2.0269 32 1 2.7931 -1.0576 1.8706 33 1 5.0501 -0.9654 0.8469 34 1 5.0486 0.8077 1.0034 35 1 4.4415 -1.9611 6.8109 36 1 5.8828 -2.2255 7.8212 37 1 5.4899 -0.5888 7.2422 38 1 7.4000 -0.3074 7.6496 39 1 9.0285 -0.2735 6.9325 40 1 7.6488 0.4123 6.0407 41 1 11.2532 -2.0671 7.2896 42 1 5.1334 -3.4599 3.8310 43 1 4.4902 -2.8186 2.3003 44 1 7.5244 -2.7180 2.6626 45 1 5.5557 -3.3746 0.3108 46 1 7.3866 -3.1976 0.1752 47 1 7.6922 -5.1046 1.8198 48 1 5.8614 -5.2811 1.9552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000910429180.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:22 Heat of formation + Delta-G solvation = 144.871279 kcal Electronic energy + Delta-G solvation = -27037.063170 eV Core-core repulsion = 23516.436953 eV Total energy + Delta-G solvation = -3520.626217 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.93972 -39.04103 -38.66768 -36.96651 -35.26901 -34.85269 -33.60482 -31.24217 -30.37603 -28.69137 -27.88383 -27.27168 -26.83198 -23.57406 -23.41995 -23.10638 -22.21131 -21.45580 -20.87946 -18.95448 -18.46184 -18.00132 -17.51889 -17.03616 -16.52475 -16.20903 -15.91293 -15.77430 -15.49540 -15.12644 -14.92950 -14.54571 -14.31040 -14.09314 -13.64042 -13.51878 -13.35924 -13.09752 -12.98802 -12.91208 -12.70102 -12.64530 -12.58968 -12.38836 -12.34503 -12.13875 -12.04136 -11.99283 -11.54871 -11.49814 -11.11212 -11.01037 -10.94051 -10.91270 -10.82460 -10.52813 -9.91794 -9.46947 -8.14452 -6.28268 0.78561 1.38354 1.44918 1.46271 1.54080 1.82451 1.96868 1.98411 2.41250 2.83082 3.06042 3.15539 3.34161 3.59120 3.68806 3.74982 3.92936 3.98352 4.13150 4.16209 4.26520 4.32180 4.38567 4.42487 4.57990 4.61033 4.64667 4.66979 4.75740 4.79757 4.90048 4.90649 5.00242 5.01934 5.04791 5.09040 5.15279 5.18080 5.24790 5.25908 5.27736 5.31724 5.41209 5.60600 5.65842 5.87965 6.05942 6.20217 6.65089 6.77309 6.81213 7.40710 7.80567 8.92216 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017209 B = 0.003484 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.701167 B = 8034.685248 C = 8854.926398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.212 4.212 3 C -0.007 4.007 4 C -0.098 4.098 5 C -0.023 4.023 6 C 0.186 3.814 7 N -0.336 5.336 8 N -0.351 5.351 9 C 0.351 3.649 10 N -0.465 5.465 11 C 0.050 3.950 12 C 0.243 3.757 13 H -0.009 1.009 14 C -0.157 4.157 15 C -0.516 4.516 16 H 0.069 0.931 17 C 0.013 3.987 18 N -0.922 5.922 19 Si 0.967 3.033 20 H -0.268 1.268 21 H -0.288 1.288 22 H -0.268 1.268 23 N -0.460 5.460 24 C 0.147 3.853 25 C -0.195 4.195 26 C -0.151 4.151 27 C -0.161 4.161 28 H 0.237 0.763 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.026 0.974 38 H 0.034 0.966 39 H 0.060 0.940 40 H 0.030 0.970 41 H 0.262 0.738 42 H 0.095 0.905 43 H 0.130 0.870 44 H 0.062 0.938 45 H 0.130 0.870 46 H 0.096 0.904 47 H 0.089 0.911 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.425 -3.729 -16.677 23.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.212 4.212 3 C -0.044 4.044 4 C -0.137 4.137 5 C -0.062 4.062 6 C -0.083 4.083 7 N -0.176 5.176 8 N -0.194 5.194 9 C -0.006 4.006 10 N -0.191 5.191 11 C -0.098 4.098 12 C 0.137 3.863 13 H 0.009 0.991 14 C -0.217 4.217 15 C -0.554 4.554 16 H 0.088 0.912 17 C -0.186 4.186 18 N -0.561 5.561 19 Si 0.792 3.208 20 H -0.193 1.193 21 H -0.213 1.213 22 H -0.192 1.192 23 N -0.153 5.153 24 C 0.026 3.974 25 C -0.215 4.215 26 C -0.187 4.187 27 C -0.198 4.198 28 H 0.254 0.746 29 H 0.121 0.879 30 H 0.132 0.868 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.133 0.867 34 H 0.128 0.872 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.044 0.956 38 H 0.053 0.947 39 H 0.079 0.921 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.113 0.887 43 H 0.148 0.852 44 H 0.080 0.920 45 H 0.148 0.852 46 H 0.115 0.885 47 H 0.107 0.893 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.164 -2.783 -16.274 22.417 hybrid contribution 0.886 -0.734 0.999 1.524 sum -14.278 -3.517 -15.275 21.203 Atomic orbital electron populations 1.25675 0.97078 1.01056 1.00076 1.23743 0.95673 1.00715 1.01099 1.18788 0.83727 1.05397 0.96459 1.21379 0.92750 1.02530 0.97031 1.20249 0.95572 1.06500 0.83903 1.25488 1.02659 0.80893 0.99240 1.73852 1.17992 1.27252 0.98462 1.74574 1.20671 1.07443 1.16711 1.22837 1.00457 0.89131 0.88191 1.59259 1.07251 1.46893 1.05671 1.22234 0.96438 0.99917 0.91180 1.18946 0.79605 0.93676 0.94035 0.99064 1.22256 1.02296 0.98073 0.99035 1.21209 0.94823 1.11824 1.27560 0.91244 1.25762 0.96485 0.98392 0.97964 1.70059 1.03750 1.36544 1.45767 0.85465 0.76843 0.79274 0.79191 1.19268 1.21347 1.19245 1.46519 1.48645 1.09450 1.10646 1.21600 0.97790 0.78061 0.99975 1.22345 0.97542 1.02513 0.99063 1.23252 1.04943 1.00916 0.89618 1.23017 1.04098 0.90050 1.02639 0.74627 0.87913 0.86850 0.92795 0.91699 0.86738 0.87161 0.91012 0.89721 0.95573 0.94711 0.92135 0.95158 0.92855 0.88665 0.85211 0.91958 0.85233 0.88511 0.89293 0.86398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.39 19.25 74.32 1.43 -1.96 16 2 C -0.21 -3.49 13.34 31.12 0.42 -3.07 16 3 C -0.01 -0.08 5.70 28.79 0.16 0.08 16 4 C -0.10 -1.56 5.15 30.60 0.16 -1.41 16 5 C -0.02 -0.41 5.47 29.85 0.16 -0.25 16 6 C 0.19 5.81 7.32 137.64 1.01 6.81 16 7 N -0.34 -13.75 12.18 -49.54 -0.60 -14.35 16 8 N -0.35 -16.27 9.81 -58.00 -0.57 -16.84 16 9 C 0.35 15.04 6.26 260.11 1.63 16.66 16 10 N -0.47 -20.87 4.73 -711.03 -3.37 -24.24 16 11 C 0.05 2.02 8.49 127.69 1.08 3.10 16 12 C 0.24 12.90 2.28 44.17 0.10 13.00 16 13 H -0.01 -0.52 8.05 -2.39 -0.02 -0.54 16 14 C -0.16 -8.50 8.18 71.98 0.59 -7.91 16 15 C -0.52 -27.95 7.80 25.60 0.20 -27.75 16 16 H 0.07 3.62 7.20 -2.91 -0.02 3.60 16 17 C 0.01 0.71 5.30 84.66 0.45 1.16 16 18 N -0.92 -53.85 11.32 21.45 0.24 -53.61 16 19 Si 0.97 42.91 29.54 68.60 2.03 44.94 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 21 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 23 N -0.46 -15.33 2.81 -514.85 -1.45 -16.77 16 24 C 0.15 3.61 6.15 86.38 0.53 4.15 16 25 C -0.20 -4.92 6.01 -10.79 -0.06 -4.98 16 26 C -0.15 -2.37 10.18 30.59 0.31 -2.06 16 27 C -0.16 -3.09 10.25 30.59 0.31 -2.78 16 28 H 0.24 2.03 7.80 -4.42 -0.03 2.00 16 29 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.11 0.74 8.14 -2.39 -0.02 0.73 16 31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.11 1.39 7.98 -2.39 -0.02 1.37 16 34 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.08 3.47 6.62 -2.39 -0.02 3.46 16 37 H 0.03 1.11 6.67 -2.38 -0.02 1.09 16 38 H 0.03 1.78 6.59 -2.39 -0.02 1.77 16 39 H 0.06 3.56 6.07 -2.39 -0.01 3.55 16 40 H 0.03 1.63 6.01 -2.39 -0.01 1.61 16 41 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 42 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 43 H 0.13 2.01 7.73 -2.39 -0.02 1.99 16 44 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.13 1.17 8.03 -2.39 -0.02 1.15 16 46 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -74.41 395.47 5.69 -68.71 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.93 Total: 19.37 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: 8.48 Total: -7.21 kcal Atomic # 7 Polarization: -120.06 SS G_CDS: -5.74 Total: -125.81 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -74.41 5.69 -68.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910429180.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.584 kcal (2) G-P(sol) polarization free energy of solvation -74.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds