Wall clock time and date at job start Tue Mar 31 2020 12:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46499 * 120.00106 * 2 1 4 4 C 1.50695 * 109.47211 * 270.00372 * 3 2 1 5 5 H 1.07992 * 120.00281 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99592 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99917 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00515 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47350 * 89.99695 * 8 6 4 10 10 H 1.48502 * 109.47482 * 210.00269 * 8 6 4 11 11 H 1.48503 * 109.46881 * 329.99847 * 8 6 4 12 12 C 1.39590 * 119.99887 * 180.02562 * 2 1 3 13 13 C 1.39050 * 119.92011 * 359.97438 * 12 2 1 14 14 C 1.37786 * 120.08209 * 179.97438 * 13 12 2 15 15 C 1.39730 * 119.91430 * 359.97438 * 14 13 12 16 16 C 1.47476 * 120.07728 * 180.02562 * 15 14 13 17 17 N 1.29751 * 119.99906 * 179.97438 * 16 15 14 18 18 N 1.40093 * 119.99889 * 184.89904 * 17 16 15 19 19 C 1.47078 * 120.88493 * 354.44673 * 18 17 16 20 20 C 1.53234 * 108.52910 * 231.16459 * 19 18 17 21 21 N 1.46902 * 109.33927 * 306.17456 * 20 19 18 22 22 C 1.46898 * 110.99890 * 187.25073 * 21 20 19 23 23 C 1.46899 * 111.27267 * 63.09928 * 21 20 19 24 24 C 1.47083 * 120.88301 * 174.43221 * 18 17 16 25 25 C 1.39730 * 119.84355 * 0.27669 * 15 14 13 26 26 C 1.37787 * 119.91333 * 359.44742 * 25 15 14 27 27 H 1.09007 * 109.47186 * 269.99235 * 1 2 3 28 28 H 1.08993 * 109.47656 * 29.99526 * 1 2 3 29 29 H 1.09005 * 109.47341 * 150.00071 * 1 2 3 30 30 H 1.09004 * 109.47068 * 30.00647 * 3 2 1 31 31 H 1.09004 * 109.47083 * 149.99920 * 3 2 1 32 32 H 0.96996 * 120.00302 * 180.02562 * 7 6 4 33 33 H 1.07994 * 119.96022 * 359.95452 * 13 12 2 34 34 H 1.08004 * 120.04408 * 179.97438 * 14 13 12 35 35 H 1.07998 * 119.99935 * 0.02562 * 16 15 14 36 36 H 1.09005 * 109.62885 * 350.88103 * 19 18 17 37 37 H 1.09004 * 109.62864 * 111.45022 * 19 18 17 38 38 H 1.09001 * 109.49042 * 66.12528 * 20 19 18 39 39 H 1.08998 * 109.49904 * 186.20723 * 20 19 18 40 40 H 1.08992 * 109.47100 * 295.69278 * 22 21 20 41 41 H 1.08995 * 109.47132 * 55.69477 * 22 21 20 42 42 H 1.09001 * 109.47181 * 175.69154 * 22 21 20 43 43 H 1.08999 * 109.49543 * 176.93734 * 23 21 20 44 44 H 1.08999 * 109.51294 * 56.86700 * 23 21 20 45 45 H 1.08999 * 109.62586 * 248.55033 * 24 18 17 46 46 H 1.09004 * 109.62772 * 8.92834 * 24 18 17 47 47 H 1.07998 * 120.04233 * 179.70380 * 25 15 14 48 48 H 1.07997 * 119.95679 * 180.27196 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0973 1.0963 -2.2416 6 6 3.1259 2.8780 -1.6726 7 7 3.3446 3.2580 -2.9125 8 14 3.7329 3.9292 -0.2528 9 1 5.1065 3.5081 0.1231 10 1 3.7477 5.3560 -0.6641 11 1 2.8271 3.7592 0.9116 12 6 2.1629 -1.2089 -0.0005 13 6 1.4659 -2.4121 -0.0005 14 6 2.1515 -3.6073 -0.0016 15 6 3.5488 -3.6092 -0.0032 16 6 4.2861 -4.8864 -0.0049 17 7 5.5836 -4.8864 -0.0070 18 7 6.2839 -6.0951 -0.1122 19 6 5.5734 -7.3829 -0.0995 20 6 6.2287 -8.2902 0.9471 21 7 7.6705 -8.3789 0.6798 22 6 8.3078 -9.3729 1.5537 23 6 8.3190 -7.0676 0.8134 24 6 7.7492 -6.1102 -0.2387 25 6 4.2457 -2.3982 0.0021 26 6 3.5534 -1.2069 -0.0026 27 1 -0.3634 -0.0001 1.0277 28 1 -0.3634 0.8899 -0.5137 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6084 2.0284 0.5140 31 1 3.1499 1.1383 0.5139 32 1 3.8215 4.0839 -3.0897 33 1 0.3860 -2.4098 0.0006 34 1 1.6095 -4.5416 -0.0012 35 1 3.7461 -5.8217 -0.0054 36 1 4.5271 -7.2212 0.1597 37 1 5.6422 -7.8487 -1.0825 38 1 6.0682 -7.8735 1.9414 39 1 5.7870 -9.2853 0.8937 40 1 8.2290 -9.0481 2.5912 41 1 7.8084 -10.3344 1.4350 42 1 9.3589 -9.4736 1.2834 43 1 9.3931 -7.1759 0.6630 44 1 8.1297 -6.6677 1.8096 45 1 8.0272 -6.4536 -1.2351 46 1 8.1412 -5.1063 -0.0749 47 1 5.3257 -2.3959 0.0057 48 1 4.0914 -0.2705 -0.0029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916249220.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:38 Heat of formation + Delta-G solvation = 104.879451 kcal Electronic energy + Delta-G solvation = -25484.043899 eV Core-core repulsion = 21961.683506 eV Total energy + Delta-G solvation = -3522.360393 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.29667 -38.92452 -36.64394 -35.46160 -32.91933 -32.42602 -31.41243 -30.60085 -29.62329 -28.34313 -27.33173 -25.43737 -24.34002 -23.84562 -22.71969 -21.83545 -21.08461 -19.88503 -18.86938 -17.37806 -16.95098 -16.74755 -15.63513 -15.43671 -15.32033 -15.19472 -14.84441 -14.53141 -14.40912 -14.28351 -13.71720 -13.55833 -13.06697 -12.96543 -12.90837 -12.76568 -12.40028 -12.29544 -12.20129 -11.67531 -11.63084 -11.54192 -11.49041 -11.40512 -11.31289 -11.19997 -10.93014 -10.61427 -10.25858 -10.15892 -9.68434 -9.58335 -9.10556 -8.76116 -8.66083 -8.36298 -7.66175 -6.29889 -6.14522 -4.14984 1.58259 2.07979 2.67437 3.04821 3.22207 3.29590 3.30589 3.54511 4.00503 4.32214 4.48398 4.57633 4.64251 4.72973 4.87059 4.97149 5.01801 5.15561 5.18035 5.19292 5.24600 5.31500 5.40159 5.46377 5.47779 5.50083 5.60664 5.71407 5.73350 5.82961 5.93956 5.99146 6.09287 6.19826 6.34343 6.35060 6.51486 6.61053 6.63894 6.73202 6.74953 6.96043 7.01629 7.17425 7.21857 7.46511 7.52472 8.00035 8.28730 8.49313 8.52253 8.92806 9.44833 10.98318 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.019151 B = 0.002423 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.704476 B =11552.678488 C =12530.266625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.606 5.606 3 C 0.218 3.782 4 C -0.535 4.535 5 H 0.077 0.923 6 C 0.073 3.927 7 N -0.894 5.894 8 Si 0.872 3.128 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.250 3.750 13 C -0.220 4.220 14 C -0.049 4.049 15 C -0.131 4.131 16 C 0.084 3.916 17 N -0.240 5.240 18 N -0.554 5.554 19 C 0.104 3.896 20 C 0.044 3.956 21 N -0.542 5.542 22 C 0.025 3.975 23 C 0.037 3.963 24 C 0.168 3.832 25 C -0.036 4.036 26 C -0.193 4.193 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.265 0.735 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.035 0.965 39 H 0.082 0.918 40 H 0.024 0.976 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.038 0.962 45 H 0.063 0.937 46 H 0.087 0.913 47 H 0.122 0.878 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.107 -22.239 9.389 24.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.311 5.311 3 C 0.097 3.903 4 C -0.574 4.574 5 H 0.095 0.905 6 C -0.130 4.130 7 N -0.532 5.532 8 Si 0.699 3.301 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.142 3.858 13 C -0.243 4.243 14 C -0.070 4.070 15 C -0.136 4.136 16 C -0.126 4.126 17 N -0.043 5.043 18 N -0.369 5.369 19 C -0.022 4.022 20 C -0.086 4.086 21 N -0.267 5.267 22 C -0.123 4.123 23 C -0.092 4.092 24 C 0.044 3.956 25 C -0.057 4.057 26 C -0.215 4.215 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.121 0.879 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.100 0.900 40 H 0.043 0.957 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.056 0.944 45 H 0.081 0.919 46 H 0.105 0.895 47 H 0.139 0.861 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.069 -21.596 8.825 23.873 hybrid contribution -0.371 0.219 1.386 1.451 sum 4.698 -21.377 10.211 24.152 Atomic orbital electron populations 1.21533 0.80871 1.02498 0.99848 1.46782 1.04579 1.04060 1.75683 1.19703 0.92010 0.80621 0.97939 1.21454 1.37082 1.07295 0.91541 0.90494 1.24901 0.95392 0.97253 0.95478 1.69897 1.41134 1.23479 1.18653 0.86916 0.79992 0.80194 0.83030 1.19836 1.20963 1.19031 1.18061 0.91508 0.85901 0.90369 1.20449 0.99178 0.91043 1.13673 1.20694 0.92473 0.96910 0.96919 1.17907 0.92164 0.90404 1.13121 1.23966 0.90558 0.96816 1.01289 1.74426 1.09716 1.07919 1.12280 1.50281 1.04590 0.98753 1.83310 1.21768 0.96706 0.84775 0.98914 1.22495 0.88445 1.00034 0.97612 1.61934 1.03000 1.07790 1.53999 1.22365 1.00065 0.95627 0.94250 1.22635 0.98944 0.89034 0.98617 1.21213 0.77538 0.99190 0.97650 1.20985 0.99387 0.90835 0.94516 1.20804 0.92470 0.98851 1.09377 0.94364 0.91153 0.92212 0.95330 0.95332 0.92481 0.86383 0.86825 0.87905 0.90197 0.91619 0.94628 0.89995 0.95742 0.91331 0.91194 0.89661 0.94414 0.91895 0.89484 0.86051 0.85160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.59 10.18 59.84 0.61 2.20 16 2 N -0.61 -12.37 2.99 -180.94 -0.54 -12.91 16 3 C 0.22 5.06 3.97 -5.20 -0.02 5.04 16 4 C -0.54 -14.73 9.94 -34.44 -0.34 -15.07 16 5 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 6 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 7 N -0.89 -26.88 13.96 55.43 0.77 -26.10 16 8 Si 0.87 20.62 27.47 -169.99 -4.67 15.96 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 12 C 0.25 4.87 6.56 -83.72 -0.55 4.32 16 13 C -0.22 -3.62 9.19 -39.45 -0.36 -3.98 16 14 C -0.05 -0.72 9.78 -39.19 -0.38 -1.10 16 15 C -0.13 -2.09 5.87 -105.02 -0.62 -2.71 16 16 C 0.08 1.19 10.25 -14.67 -0.15 1.04 16 17 N -0.24 -3.61 10.64 32.16 0.34 -3.27 16 18 N -0.55 -7.00 4.02 -113.23 -0.45 -7.46 16 19 C 0.10 1.06 6.50 -3.61 -0.02 1.04 16 20 C 0.04 0.39 5.62 -3.70 -0.02 0.36 16 21 N -0.54 -4.82 4.88 -242.62 -1.18 -6.00 16 22 C 0.03 0.17 9.58 60.06 0.58 0.75 16 23 C 0.04 0.33 5.62 -3.70 -0.02 0.31 16 24 C 0.17 1.79 6.96 -3.60 -0.03 1.77 16 25 C -0.04 -0.65 9.57 -39.19 -0.37 -1.02 16 26 C -0.19 -3.83 9.19 -39.44 -0.36 -4.19 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 29 H 0.06 0.87 6.18 -51.93 -0.32 0.55 16 30 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 31 H 0.03 0.66 5.61 -51.93 -0.29 0.37 16 32 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.12 1.69 6.12 -52.49 -0.32 1.37 16 34 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 35 H 0.10 1.21 5.69 -52.49 -0.30 0.92 16 36 H 0.08 0.75 5.59 -51.93 -0.29 0.46 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.58 8.06 -51.93 -0.42 0.16 16 40 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 41 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 0.61 8.11 -51.93 -0.42 0.19 16 44 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.09 0.93 8.13 -51.93 -0.42 0.51 16 47 H 0.12 2.10 7.55 -52.49 -0.40 1.71 16 48 H 0.13 2.78 6.12 -52.49 -0.32 2.46 16 LS Contribution 380.81 15.07 5.74 5.74 Total: -1.00 -31.44 380.81 -9.84 -41.28 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.68 Total: 2.07 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -2.16 Total: -9.30 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -1.06 Total: -55.74 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.67 Total: 15.96 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.44 -9.84 -41.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916249220.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.163 kcal (2) G-P(sol) polarization free energy of solvation -31.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds