Wall clock time and date at job start Tue Mar 31 2020 12:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46499 * 120.00106 * 2 1 4 4 C 1.50695 * 109.47211 * 270.00372 * 3 2 1 5 5 H 1.07992 * 120.00281 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99592 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99917 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00515 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47350 * 89.99695 * 8 6 4 10 10 H 1.48502 * 109.47482 * 210.00269 * 8 6 4 11 11 H 1.48503 * 109.46881 * 329.99847 * 8 6 4 12 12 C 1.39590 * 119.99887 * 180.02562 * 2 1 3 13 13 C 1.39050 * 119.92011 * 359.97438 * 12 2 1 14 14 C 1.37786 * 120.08209 * 179.97438 * 13 12 2 15 15 C 1.39730 * 119.91430 * 359.97438 * 14 13 12 16 16 C 1.47476 * 120.07728 * 180.02562 * 15 14 13 17 17 N 1.29751 * 119.99906 * 179.97438 * 16 15 14 18 18 N 1.40093 * 119.99889 * 184.89904 * 17 16 15 19 19 C 1.47078 * 120.88493 * 354.44673 * 18 17 16 20 20 C 1.53234 * 108.52910 * 231.16459 * 19 18 17 21 21 N 1.46902 * 109.33927 * 306.17456 * 20 19 18 22 22 C 1.46898 * 110.99890 * 187.25073 * 21 20 19 23 23 C 1.46899 * 111.27267 * 63.09928 * 21 20 19 24 24 C 1.47083 * 120.88301 * 174.43221 * 18 17 16 25 25 C 1.39730 * 119.84355 * 0.27669 * 15 14 13 26 26 C 1.37787 * 119.91333 * 359.44742 * 25 15 14 27 27 H 1.09007 * 109.47186 * 269.99235 * 1 2 3 28 28 H 1.08993 * 109.47656 * 29.99526 * 1 2 3 29 29 H 1.09005 * 109.47341 * 150.00071 * 1 2 3 30 30 H 1.09004 * 109.47068 * 30.00647 * 3 2 1 31 31 H 1.09004 * 109.47083 * 149.99920 * 3 2 1 32 32 H 0.96996 * 120.00302 * 180.02562 * 7 6 4 33 33 H 1.07994 * 119.96022 * 359.95452 * 13 12 2 34 34 H 1.08004 * 120.04408 * 179.97438 * 14 13 12 35 35 H 1.07998 * 119.99935 * 0.02562 * 16 15 14 36 36 H 1.09005 * 109.62885 * 350.88103 * 19 18 17 37 37 H 1.09004 * 109.62864 * 111.45022 * 19 18 17 38 38 H 1.09001 * 109.49042 * 66.12528 * 20 19 18 39 39 H 1.08998 * 109.49904 * 186.20723 * 20 19 18 40 40 H 1.08992 * 109.47100 * 295.69278 * 22 21 20 41 41 H 1.08995 * 109.47132 * 55.69477 * 22 21 20 42 42 H 1.09001 * 109.47181 * 175.69154 * 22 21 20 43 43 H 1.08999 * 109.49543 * 176.93734 * 23 21 20 44 44 H 1.08999 * 109.51294 * 56.86700 * 23 21 20 45 45 H 1.08999 * 109.62586 * 248.55033 * 24 18 17 46 46 H 1.09004 * 109.62772 * 8.92834 * 24 18 17 47 47 H 1.07998 * 120.04233 * 179.70380 * 25 15 14 48 48 H 1.07997 * 119.95679 * 180.27196 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0973 1.0963 -2.2416 6 6 3.1259 2.8780 -1.6726 7 7 3.3446 3.2580 -2.9125 8 14 3.7329 3.9292 -0.2528 9 1 5.1065 3.5081 0.1231 10 1 3.7477 5.3560 -0.6641 11 1 2.8271 3.7592 0.9116 12 6 2.1629 -1.2089 -0.0005 13 6 1.4659 -2.4121 -0.0005 14 6 2.1515 -3.6073 -0.0016 15 6 3.5488 -3.6092 -0.0032 16 6 4.2861 -4.8864 -0.0049 17 7 5.5836 -4.8864 -0.0070 18 7 6.2839 -6.0951 -0.1122 19 6 5.5734 -7.3829 -0.0995 20 6 6.2287 -8.2902 0.9471 21 7 7.6705 -8.3789 0.6798 22 6 8.3078 -9.3729 1.5537 23 6 8.3190 -7.0676 0.8134 24 6 7.7492 -6.1102 -0.2387 25 6 4.2457 -2.3982 0.0021 26 6 3.5534 -1.2069 -0.0026 27 1 -0.3634 -0.0001 1.0277 28 1 -0.3634 0.8899 -0.5137 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6084 2.0284 0.5140 31 1 3.1499 1.1383 0.5139 32 1 3.8215 4.0839 -3.0897 33 1 0.3860 -2.4098 0.0006 34 1 1.6095 -4.5416 -0.0012 35 1 3.7461 -5.8217 -0.0054 36 1 4.5271 -7.2212 0.1597 37 1 5.6422 -7.8487 -1.0825 38 1 6.0682 -7.8735 1.9414 39 1 5.7870 -9.2853 0.8937 40 1 8.2290 -9.0481 2.5912 41 1 7.8084 -10.3344 1.4350 42 1 9.3589 -9.4736 1.2834 43 1 9.3931 -7.1759 0.6630 44 1 8.1297 -6.6677 1.8096 45 1 8.0272 -6.4536 -1.2351 46 1 8.1412 -5.1063 -0.0749 47 1 5.3257 -2.3959 0.0057 48 1 4.0914 -0.2705 -0.0029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916249220.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:37 Heat of formation + Delta-G solvation = 84.815761 kcal Electronic energy + Delta-G solvation = -25484.913926 eV Core-core repulsion = 21961.683506 eV Total energy + Delta-G solvation = -3523.230420 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.43331 -39.95040 -37.82200 -36.69380 -34.74880 -33.65600 -32.20138 -31.99265 -30.97941 -29.94534 -28.24150 -26.79490 -25.32298 -24.75311 -24.11142 -23.15073 -22.30589 -21.11869 -19.92025 -19.07541 -18.34686 -18.15174 -16.80143 -16.55461 -16.21056 -16.11771 -15.96103 -15.72994 -15.57961 -15.36636 -15.05722 -14.93797 -14.71173 -14.36559 -14.13307 -13.72390 -13.63344 -13.36960 -13.22140 -13.10402 -12.91955 -12.67857 -12.52549 -12.49393 -12.38285 -12.27229 -12.21807 -12.10124 -11.99524 -11.74143 -11.50165 -10.82497 -10.71682 -10.52826 -9.70727 -9.46744 -8.76740 -8.32699 -7.67678 -6.37968 0.32965 0.72840 1.34563 1.35517 1.45651 1.71336 1.86813 2.30780 2.53621 2.89807 3.01141 3.23817 3.65947 3.87661 4.00491 4.07519 4.09118 4.22059 4.23796 4.26686 4.41134 4.45710 4.49040 4.60220 4.61874 4.64289 4.69517 4.72225 4.75587 4.79811 4.81080 4.84908 4.92618 4.97440 4.99362 5.02917 5.04407 5.21404 5.33201 5.46214 5.58583 5.69526 5.87536 5.96029 5.99880 6.06851 6.17942 6.20751 6.59300 6.69993 6.85336 7.27179 7.49339 8.84474 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.019151 B = 0.002423 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.704476 B =11552.678488 C =12530.266625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.623 5.623 3 C 0.229 3.771 4 C -0.535 4.535 5 H 0.026 0.974 6 C 0.011 3.989 7 N -0.946 5.946 8 Si 0.945 3.055 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.241 1.241 12 C 0.221 3.779 13 C -0.213 4.213 14 C -0.038 4.038 15 C -0.125 4.125 16 C 0.077 3.923 17 N -0.265 5.265 18 N -0.558 5.558 19 C 0.101 3.899 20 C 0.048 3.952 21 N -0.552 5.552 22 C 0.026 3.974 23 C 0.045 3.955 24 C 0.162 3.838 25 C -0.048 4.048 26 C -0.220 4.220 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.029 0.971 32 H 0.267 0.733 33 H 0.144 0.856 34 H 0.159 0.841 35 H 0.134 0.866 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.024 0.976 39 H 0.103 0.897 40 H 0.022 0.978 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.104 0.896 44 H 0.025 0.975 45 H 0.066 0.934 46 H 0.079 0.921 47 H 0.116 0.884 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.554 -25.014 11.335 27.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.330 5.330 3 C 0.106 3.894 4 C -0.573 4.573 5 H 0.045 0.955 6 C -0.187 4.187 7 N -0.586 5.586 8 Si 0.768 3.232 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.165 1.165 12 C 0.115 3.885 13 C -0.236 4.236 14 C -0.059 4.059 15 C -0.130 4.130 16 C -0.133 4.133 17 N -0.069 5.069 18 N -0.374 5.374 19 C -0.024 4.024 20 C -0.081 4.081 21 N -0.277 5.277 22 C -0.122 4.122 23 C -0.084 4.084 24 C 0.038 3.962 25 C -0.069 4.069 26 C -0.243 4.243 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.162 0.838 34 H 0.177 0.823 35 H 0.151 0.849 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.042 0.958 39 H 0.122 0.878 40 H 0.041 0.959 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.122 0.878 44 H 0.043 0.957 45 H 0.084 0.916 46 H 0.097 0.903 47 H 0.134 0.866 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.502 -24.428 10.788 27.080 hybrid contribution -0.115 0.847 0.687 1.096 sum 4.387 -23.581 11.474 26.589 Atomic orbital electron populations 1.21701 0.78754 1.02808 1.01589 1.46746 1.05884 1.03263 1.77132 1.19376 0.92692 0.82523 0.94805 1.21656 1.36387 1.06611 0.92679 0.95532 1.25873 0.95567 0.98860 0.98437 1.70064 1.42745 1.24415 1.21371 0.85752 0.79812 0.77827 0.79834 1.19297 1.20554 1.16463 1.18339 0.91438 0.86777 0.91944 1.20777 1.00491 0.90195 1.12111 1.21140 0.91954 0.98149 0.94654 1.18195 0.93122 0.90383 1.11288 1.23970 0.90523 0.96940 1.01880 1.74319 1.10614 1.10173 1.11769 1.50508 1.05266 0.98859 1.82813 1.21937 0.97164 0.83751 0.99579 1.22472 0.88594 1.00693 0.96345 1.61969 1.03143 1.07822 1.54722 1.22417 1.00631 0.95429 0.93720 1.22548 0.99919 0.88853 0.97107 1.21348 0.76898 0.99436 0.98499 1.20997 0.99280 0.91297 0.95300 1.20712 0.93266 0.98445 1.11829 0.91707 0.92538 0.90277 0.94370 0.95351 0.92356 0.83794 0.82329 0.84935 0.89264 0.91345 0.95780 0.87835 0.95941 0.90154 0.90271 0.87797 0.95706 0.91557 0.90270 0.86639 0.88069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.99 10.18 127.77 1.30 4.29 16 2 N -0.62 -25.57 2.99 -726.37 -2.17 -27.74 16 3 C 0.23 10.80 3.97 85.63 0.34 11.14 16 4 C -0.53 -30.79 9.94 25.60 0.25 -30.54 16 5 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 6 C 0.01 0.62 5.47 84.65 0.46 1.08 16 7 N -0.95 -59.39 13.96 21.45 0.30 -59.09 16 8 Si 0.95 43.33 27.47 68.60 1.88 45.21 16 9 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.24 -10.04 6.54 99.48 0.65 -9.39 16 12 C 0.22 8.65 6.56 38.30 0.25 8.90 16 13 C -0.21 -6.53 9.19 22.36 0.21 -6.32 16 14 C -0.04 -1.01 9.78 22.52 0.22 -0.79 16 15 C -0.13 -3.82 5.87 -20.12 -0.12 -3.94 16 16 C 0.08 2.03 10.25 87.44 0.90 2.92 16 17 N -0.26 -7.72 10.64 -52.17 -0.56 -8.28 16 18 N -0.56 -13.39 4.02 -512.16 -2.06 -15.45 16 19 C 0.10 1.82 6.50 86.35 0.56 2.38 16 20 C 0.05 0.73 5.62 86.38 0.49 1.22 16 21 N -0.55 -8.55 4.88 -921.51 -4.50 -13.05 16 22 C 0.03 0.28 9.58 127.69 1.22 1.51 16 23 C 0.05 0.74 5.62 86.38 0.49 1.23 16 24 C 0.16 3.32 6.96 86.35 0.60 3.92 16 25 C -0.05 -1.75 9.57 22.52 0.22 -1.53 16 26 C -0.22 -9.12 9.19 22.36 0.21 -8.91 16 27 H 0.06 1.70 8.14 -2.38 -0.02 1.69 16 28 H 0.06 1.92 8.07 -2.39 -0.02 1.90 16 29 H 0.08 2.15 6.18 -2.38 -0.01 2.14 16 30 H 0.04 1.72 7.13 -2.39 -0.02 1.71 16 31 H 0.03 1.35 5.61 -2.39 -0.01 1.33 16 32 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 33 H 0.14 3.61 6.12 -2.91 -0.02 3.59 16 34 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 35 H 0.13 2.65 5.69 -2.91 -0.02 2.63 16 36 H 0.09 1.41 5.59 -2.38 -0.01 1.39 16 37 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.10 1.13 8.06 -2.39 -0.02 1.11 16 40 H 0.02 0.26 8.14 -2.39 -0.02 0.24 16 41 H 0.08 0.70 8.08 -2.39 -0.02 0.68 16 42 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.10 1.30 8.11 -2.39 -0.02 1.28 16 44 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.08 1.71 8.13 -2.38 -0.02 1.69 16 47 H 0.12 4.22 7.55 -2.91 -0.02 4.20 16 48 H 0.10 4.66 6.12 -2.91 -0.02 4.64 16 Total: -1.00 -72.12 380.81 1.37 -70.74 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.88 Total: 21.09 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: 7.59 Total: -13.44 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -8.98 Total: -123.61 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.88 Total: 45.21 kcal Total: -72.12 1.37 -70.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916249220.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.557 kcal (2) G-P(sol) polarization free energy of solvation -72.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds