Wall clock time and date at job start Tue Mar 31 2020 12:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38241 * 119.99681 * 2 1 4 4 C 1.38239 * 119.99766 * 179.97438 * 3 2 1 5 5 C 1.38240 * 119.99966 * 0.02567 * 4 3 2 6 6 C 1.50695 * 120.00000 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.47373 * 89.99337 * 6 5 4 8 8 C 1.48064 * 110.99895 * 293.95502 * 7 6 5 9 9 C 1.50748 * 112.93335 * 192.21702 * 8 7 6 10 10 C 1.54521 * 108.94342 * 92.65199 * 9 8 7 11 11 N 1.40081 * 111.50682 * 283.99035 * 10 9 8 12 12 C 1.46906 * 110.99852 * 188.14763 * 11 10 9 13 13 H 1.08998 * 109.47121 * 186.04205 * 12 11 10 14 14 C 1.53000 * 109.47029 * 306.04614 * 12 11 10 15 15 C 1.52997 * 109.46848 * 66.04372 * 12 11 10 16 16 C 1.50709 * 109.47215 * 65.00300 * 15 12 11 17 17 H 1.08003 * 119.99478 * 0.02562 * 16 15 12 18 18 C 1.37875 * 120.00176 * 180.02562 * 16 15 12 19 19 N 1.31515 * 119.99977 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99883 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47225 * 90.00467 * 20 18 16 22 22 H 1.48502 * 109.47263 * 210.00101 * 20 18 16 23 23 H 1.48498 * 109.47411 * 330.00545 * 20 18 16 24 24 C 1.47685 * 114.57445 * 61.45320 * 11 10 9 25 25 C 1.47744 * 110.99825 * 166.35244 * 7 6 5 26 26 C 1.38236 * 119.99817 * 0.24420 * 5 4 3 27 27 C 1.38231 * 120.00070 * 179.97438 * 2 1 3 28 28 H 1.09006 * 109.47129 * 89.99747 * 1 2 3 29 29 H 1.08997 * 109.47405 * 209.99786 * 1 2 3 30 30 H 1.09001 * 109.47672 * 330.00152 * 1 2 3 31 31 H 1.08000 * 120.00075 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.99904 * 179.97438 * 4 3 2 33 33 H 1.09004 * 109.46852 * 329.99000 * 6 5 4 34 34 H 1.09000 * 109.47275 * 209.99819 * 6 5 4 35 35 H 1.08995 * 108.79305 * 71.32931 * 8 7 6 36 36 H 1.09005 * 108.70097 * 313.04307 * 8 7 6 37 37 H 1.09001 * 109.55993 * 332.81265 * 9 8 7 38 38 H 1.08998 * 109.55834 * 212.48425 * 9 8 7 39 39 H 1.08998 * 109.07257 * 163.46666 * 10 9 8 40 40 H 1.09002 * 109.06888 * 44.50896 * 10 9 8 41 41 H 1.09002 * 109.46786 * 180.02562 * 14 12 11 42 42 H 1.08999 * 109.46789 * 299.99921 * 14 12 11 43 43 H 1.08998 * 109.47056 * 60.00115 * 14 12 11 44 44 H 1.09001 * 109.46957 * 184.99642 * 15 12 11 45 45 H 1.08994 * 109.47537 * 305.00287 * 15 12 11 46 46 H 0.96995 * 119.99811 * 179.97438 * 19 18 16 47 47 H 1.09001 * 109.73990 * 38.33022 * 24 11 10 48 48 H 1.09000 * 109.74113 * 159.03994 * 24 11 10 49 49 H 1.08997 * 108.99496 * 205.57205 * 25 7 6 50 50 H 1.09000 * 108.99284 * 324.39941 * 25 7 6 51 51 H 1.08002 * 119.99518 * 179.72869 * 26 5 4 52 52 H 1.07999 * 119.99940 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0001 0.0005 6 6 5.7786 0.0001 0.0005 7 7 6.2684 0.0002 1.3855 8 6 5.9161 1.2636 2.0727 9 6 6.6379 1.4398 3.3844 10 6 7.9378 2.2382 3.1383 11 7 8.9272 1.4399 2.5501 12 6 10.2131 2.1485 2.4977 13 1 10.9351 1.5504 1.9419 14 6 10.0240 3.4974 1.8009 15 6 10.7277 2.3771 3.9203 16 6 11.0305 1.0487 4.5645 17 1 10.8721 0.1331 4.0141 18 6 11.5096 1.0024 5.8565 19 7 11.7734 -0.1569 6.4188 20 14 11.7842 2.5861 6.8082 21 1 10.5449 2.9422 7.5448 22 1 12.8967 2.3971 7.7735 23 1 12.1291 3.6782 5.8630 24 6 8.5692 0.8945 1.2252 25 6 7.7086 -0.3252 1.4378 26 6 3.5805 -1.1971 -0.0051 27 6 2.1981 -1.1971 0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6580 2.1325 -0.0004 32 1 4.1204 2.1326 0.0001 33 1 6.1419 0.8900 -0.5135 34 1 6.1420 -0.8899 -0.5133 35 1 4.8422 1.2744 2.2588 36 1 6.1671 2.0988 1.4189 37 1 6.8831 0.4625 3.8001 38 1 6.0011 1.9852 4.0809 39 1 8.3071 2.6197 4.0902 40 1 7.7201 3.0788 2.4794 41 1 10.9781 4.0229 1.7616 42 1 9.6573 3.3345 0.7874 43 1 9.3019 4.0955 2.3568 44 1 11.6354 2.9794 3.8858 45 1 9.9676 2.8982 4.5023 46 1 12.1108 -0.1894 7.3276 47 1 8.0149 1.6416 0.6571 48 1 9.4740 0.6168 0.6846 49 1 7.9396 -0.7569 2.4116 50 1 7.9352 -1.0573 0.6628 51 1 4.1205 -2.1323 -0.0095 52 1 1.6581 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117991536.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:54 Heat of formation + Delta-G solvation = 36.821119 kcal Electronic energy + Delta-G solvation = -27227.892178 eV Core-core repulsion = 23806.120898 eV Total energy + Delta-G solvation = -3421.771280 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.04269 -39.21607 -36.68703 -33.73277 -32.59582 -32.17838 -31.10726 -30.95727 -28.81635 -27.85025 -26.36724 -25.57864 -23.88688 -22.95425 -22.75449 -21.13505 -20.87811 -19.49407 -18.78401 -16.56182 -16.43215 -16.20518 -15.72418 -15.43735 -15.19128 -15.00828 -14.52849 -14.12219 -13.91682 -13.84680 -13.52823 -13.26810 -13.03384 -12.82235 -12.71568 -12.53928 -12.30247 -12.19019 -12.10149 -11.91876 -11.78886 -11.58033 -11.32358 -11.21128 -11.02862 -11.00192 -10.83194 -10.69121 -10.49455 -10.09489 -10.00065 -9.68983 -9.51591 -9.01778 -8.99855 -8.65391 -8.41425 -8.08951 -7.37767 -5.90171 -3.84118 1.20247 1.31337 3.35630 3.43555 3.45429 3.55186 4.16030 4.46747 4.54723 4.62650 4.67063 4.81336 4.90105 5.00345 5.16717 5.25192 5.27774 5.32891 5.37305 5.39463 5.43637 5.50570 5.54419 5.58059 5.60719 5.62690 5.67671 5.76619 5.85170 5.86568 5.89246 5.95947 5.97644 5.99827 6.11078 6.24741 6.28710 6.30697 6.45314 6.46337 6.54338 6.57587 6.60547 6.67259 6.80167 6.90416 7.16379 7.21950 7.28829 7.33617 7.84198 7.96105 8.13902 8.72680 9.22278 9.72886 11.23809 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023050 B = 0.002739 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.435556 B =10220.174519 C =10360.763692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.123 4.123 4 C -0.110 4.110 5 C -0.075 4.075 6 C 0.095 3.905 7 N -0.539 5.539 8 C 0.067 3.933 9 C -0.124 4.124 10 C 0.073 3.927 11 N -0.522 5.522 12 C 0.101 3.899 13 H 0.074 0.926 14 C -0.185 4.185 15 C -0.008 4.008 16 C -0.489 4.489 17 H 0.079 0.921 18 C 0.062 3.938 19 N -0.907 5.907 20 Si 0.871 3.129 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.269 1.269 24 C 0.038 3.962 25 C 0.059 3.941 26 C -0.095 4.095 27 C -0.122 4.122 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.037 0.963 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.025 0.975 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.007 0.993 41 H 0.055 0.945 42 H 0.039 0.961 43 H 0.052 0.948 44 H 0.017 0.983 45 H 0.012 0.988 46 H 0.259 0.741 47 H 0.027 0.973 48 H 0.073 0.927 49 H 0.098 0.902 50 H 0.066 0.934 51 H 0.123 0.877 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.969 2.296 -15.494 24.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.141 4.141 4 C -0.128 4.128 5 C -0.076 4.076 6 C -0.033 4.033 7 N -0.264 5.264 8 C -0.060 4.060 9 C -0.162 4.162 10 C -0.056 4.056 11 N -0.245 5.245 12 C -0.006 4.006 13 H 0.093 0.907 14 C -0.244 4.244 15 C -0.046 4.046 16 C -0.527 4.527 17 H 0.097 0.903 18 C -0.138 4.138 19 N -0.547 5.547 20 Si 0.699 3.301 21 H -0.206 1.206 22 H -0.216 1.216 23 H -0.194 1.194 24 C -0.091 4.091 25 C -0.069 4.069 26 C -0.114 4.114 27 C -0.140 4.140 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.055 0.945 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.043 0.957 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.025 0.975 41 H 0.074 0.926 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.035 0.965 45 H 0.030 0.970 46 H 0.069 0.931 47 H 0.045 0.955 48 H 0.091 0.909 49 H 0.116 0.884 50 H 0.085 0.915 51 H 0.141 0.859 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.077 1.487 -14.783 24.180 hybrid contribution 0.491 2.227 -0.258 2.295 sum -18.586 3.713 -15.041 24.196 Atomic orbital electron populations 1.20775 0.91474 1.02672 1.02073 1.19889 0.95894 0.93304 1.00212 1.20963 0.94094 0.97399 1.01605 1.21040 0.94127 0.97570 1.00093 1.19793 0.95317 0.93098 0.99379 1.21056 0.90710 1.01169 0.90338 1.62119 1.16025 1.34641 1.13630 1.21861 0.99773 0.89182 0.95204 1.21602 0.95842 1.02637 0.96100 1.21085 0.91705 0.93114 0.99707 1.58968 1.03293 1.41036 1.21219 1.21694 0.89712 0.90545 0.98689 0.90735 1.22547 1.01679 1.00554 0.99590 1.19727 0.95227 0.98252 0.91349 1.21026 1.40974 0.92430 0.98273 0.90300 1.25004 0.95716 0.95395 0.97651 1.69907 1.46561 1.24005 1.14260 0.86924 0.77880 0.85102 0.80159 1.20583 1.21643 1.19387 1.22332 0.99298 0.96873 0.90594 1.22100 0.84271 0.96456 1.04033 1.21011 0.93842 0.97739 0.98783 1.21011 0.94244 0.97372 1.01398 0.91411 0.91634 0.91703 0.86414 0.86582 0.94494 0.90097 0.91509 0.95701 0.89356 0.91334 0.89909 0.97495 0.92552 0.94163 0.92919 0.96487 0.96956 0.93081 0.95527 0.90885 0.88382 0.91548 0.85949 0.86288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.00 0.36 -0.42 16 2 C -0.09 -0.88 5.88 -104.63 -0.62 -1.49 16 3 C -0.12 -1.20 9.70 -39.58 -0.38 -1.59 16 4 C -0.11 -1.17 8.26 -39.58 -0.33 -1.50 16 5 C -0.08 -0.84 4.89 -104.62 -0.51 -1.35 16 6 C 0.09 1.08 4.99 -4.98 -0.02 1.05 16 7 N -0.54 -7.22 4.73 -237.13 -1.12 -8.34 16 8 C 0.07 0.91 4.19 -4.31 -0.02 0.89 16 9 C -0.12 -1.90 5.68 -27.06 -0.15 -2.06 16 10 C 0.07 1.26 4.11 -6.55 -0.03 1.23 16 11 N -0.52 -9.49 3.63 -231.68 -0.84 -10.33 16 12 C 0.10 1.95 2.20 -67.71 -0.15 1.80 16 13 H 0.07 1.48 7.68 -51.93 -0.40 1.08 16 14 C -0.18 -2.98 8.49 37.16 0.32 -2.67 16 15 C -0.01 -0.19 3.41 -27.88 -0.10 -0.29 16 16 C -0.49 -13.66 9.39 -34.44 -0.32 -13.99 16 17 H 0.08 2.41 7.99 -52.48 -0.42 1.99 16 18 C 0.06 1.80 5.47 -17.82 -0.10 1.71 16 19 N -0.91 -28.18 13.96 55.43 0.77 -27.41 16 20 Si 0.87 21.85 27.47 -169.99 -4.67 17.18 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 24 C 0.04 0.57 4.68 -4.50 -0.02 0.55 16 25 C 0.06 0.84 5.25 -4.47 -0.02 0.82 16 26 C -0.10 -1.01 9.70 -39.58 -0.38 -1.40 16 27 C -0.12 -1.19 9.70 -39.58 -0.38 -1.58 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 30 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.12 1.16 8.03 -52.49 -0.42 0.74 16 33 H 0.04 0.42 7.67 -51.93 -0.40 0.02 16 34 H 0.08 0.84 7.64 -51.93 -0.40 0.44 16 35 H 0.07 0.89 6.92 -51.93 -0.36 0.54 16 36 H 0.02 0.34 6.28 -51.93 -0.33 0.01 16 37 H 0.09 1.56 7.19 -51.93 -0.37 1.18 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.08 1.60 5.86 -51.93 -0.30 1.30 16 40 H 0.01 0.12 6.00 -51.93 -0.31 -0.19 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.04 0.59 7.63 -51.93 -0.40 0.19 16 43 H 0.05 0.84 6.53 -51.93 -0.34 0.50 16 44 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 45 H 0.01 0.29 5.58 -51.93 -0.29 0.00 16 46 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 47 H 0.03 0.39 6.35 -51.93 -0.33 0.06 16 48 H 0.07 1.08 7.55 -51.93 -0.39 0.69 16 49 H 0.10 1.70 7.20 -51.93 -0.37 1.32 16 50 H 0.07 0.84 7.58 -51.93 -0.39 0.44 16 51 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 52 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 386.52 15.07 5.82 5.82 Total: -1.00 -30.47 386.52 -12.04 -42.51 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -9.14 Total: 0.83 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -2.86 Total: -20.26 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: -1.19 Total: -46.08 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.47 -12.04 -42.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117991536.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.329 kcal (2) G-P(sol) polarization free energy of solvation -30.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds