Wall clock time and date at job start Tue Mar 31 2020 12:15:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 C 1.38241 * 119.99681 * 2 1
4 4 C 1.38239 * 119.99766 * 179.97438 * 3 2 1
5 5 C 1.38240 * 119.99966 * 0.02567 * 4 3 2
6 6 C 1.50695 * 120.00000 * 179.97438 * 5 4 3
7 7 N 1.46901 * 109.47373 * 89.99337 * 6 5 4
8 8 C 1.48064 * 110.99895 * 293.95502 * 7 6 5
9 9 C 1.50748 * 112.93335 * 192.21702 * 8 7 6
10 10 C 1.54521 * 108.94342 * 92.65199 * 9 8 7
11 11 N 1.40081 * 111.50682 * 283.99035 * 10 9 8
12 12 C 1.46906 * 110.99852 * 188.14763 * 11 10 9
13 13 H 1.08998 * 109.47121 * 186.04205 * 12 11 10
14 14 C 1.53000 * 109.47029 * 306.04614 * 12 11 10
15 15 C 1.52997 * 109.46848 * 66.04372 * 12 11 10
16 16 C 1.50709 * 109.47215 * 65.00300 * 15 12 11
17 17 H 1.08003 * 119.99478 * 0.02562 * 16 15 12
18 18 C 1.37875 * 120.00176 * 180.02562 * 16 15 12
19 19 N 1.31515 * 119.99977 * 179.97438 * 18 16 15
20 20 Si 1.86801 * 119.99883 * 359.97438 * 18 16 15
21 21 H 1.48501 * 109.47225 * 90.00467 * 20 18 16
22 22 H 1.48502 * 109.47263 * 210.00101 * 20 18 16
23 23 H 1.48498 * 109.47411 * 330.00545 * 20 18 16
24 24 C 1.47685 * 114.57445 * 61.45320 * 11 10 9
25 25 C 1.47744 * 110.99825 * 166.35244 * 7 6 5
26 26 C 1.38236 * 119.99817 * 0.24420 * 5 4 3
27 27 C 1.38231 * 120.00070 * 179.97438 * 2 1 3
28 28 H 1.09006 * 109.47129 * 89.99747 * 1 2 3
29 29 H 1.08997 * 109.47405 * 209.99786 * 1 2 3
30 30 H 1.09001 * 109.47672 * 330.00152 * 1 2 3
31 31 H 1.08000 * 120.00075 * 359.97438 * 3 2 1
32 32 H 1.08002 * 119.99904 * 179.97438 * 4 3 2
33 33 H 1.09004 * 109.46852 * 329.99000 * 6 5 4
34 34 H 1.09000 * 109.47275 * 209.99819 * 6 5 4
35 35 H 1.08995 * 108.79305 * 71.32931 * 8 7 6
36 36 H 1.09005 * 108.70097 * 313.04307 * 8 7 6
37 37 H 1.09001 * 109.55993 * 332.81265 * 9 8 7
38 38 H 1.08998 * 109.55834 * 212.48425 * 9 8 7
39 39 H 1.08998 * 109.07257 * 163.46666 * 10 9 8
40 40 H 1.09002 * 109.06888 * 44.50896 * 10 9 8
41 41 H 1.09002 * 109.46786 * 180.02562 * 14 12 11
42 42 H 1.08999 * 109.46789 * 299.99921 * 14 12 11
43 43 H 1.08998 * 109.47056 * 60.00115 * 14 12 11
44 44 H 1.09001 * 109.46957 * 184.99642 * 15 12 11
45 45 H 1.08994 * 109.47537 * 305.00287 * 15 12 11
46 46 H 0.96995 * 119.99811 * 179.97438 * 19 18 16
47 47 H 1.09001 * 109.73990 * 38.33022 * 24 11 10
48 48 H 1.09000 * 109.74113 * 159.03994 * 24 11 10
49 49 H 1.08997 * 108.99496 * 205.57205 * 25 7 6
50 50 H 1.09000 * 108.99284 * 324.39941 * 25 7 6
51 51 H 1.08002 * 119.99518 * 179.72869 * 26 5 4
52 52 H 1.07999 * 119.99940 * 359.97438 * 27 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1981 1.1972 0.0000
4 6 3.5805 1.1973 0.0005
5 6 4.2717 0.0001 0.0005
6 6 5.7786 0.0001 0.0005
7 7 6.2684 0.0002 1.3855
8 6 5.9161 1.2636 2.0727
9 6 6.6379 1.4398 3.3844
10 6 7.9378 2.2382 3.1383
11 7 8.9272 1.4399 2.5501
12 6 10.2131 2.1485 2.4977
13 1 10.9351 1.5504 1.9419
14 6 10.0240 3.4974 1.8009
15 6 10.7277 2.3771 3.9203
16 6 11.0305 1.0487 4.5645
17 1 10.8721 0.1331 4.0141
18 6 11.5096 1.0024 5.8565
19 7 11.7734 -0.1569 6.4188
20 14 11.7842 2.5861 6.8082
21 1 10.5449 2.9422 7.5448
22 1 12.8967 2.3971 7.7735
23 1 12.1291 3.6782 5.8630
24 6 8.5692 0.8945 1.2252
25 6 7.7086 -0.3252 1.4378
26 6 3.5805 -1.1971 -0.0051
27 6 2.1981 -1.1971 0.0005
28 1 -0.3634 0.0000 -1.0277
29 1 -0.3634 -0.8900 0.5138
30 1 -0.3634 0.8900 0.5138
31 1 1.6580 2.1325 -0.0004
32 1 4.1204 2.1326 0.0001
33 1 6.1419 0.8900 -0.5135
34 1 6.1420 -0.8899 -0.5133
35 1 4.8422 1.2744 2.2588
36 1 6.1671 2.0988 1.4189
37 1 6.8831 0.4625 3.8001
38 1 6.0011 1.9852 4.0809
39 1 8.3071 2.6197 4.0902
40 1 7.7201 3.0788 2.4794
41 1 10.9781 4.0229 1.7616
42 1 9.6573 3.3345 0.7874
43 1 9.3019 4.0955 2.3568
44 1 11.6354 2.9794 3.8858
45 1 9.9676 2.8982 4.5023
46 1 12.1108 -0.1894 7.3276
47 1 8.0149 1.6416 0.6571
48 1 9.4740 0.6168 0.6846
49 1 7.9396 -0.7569 2.4116
50 1 7.9352 -1.0573 0.6628
51 1 4.1205 -2.1323 -0.0095
52 1 1.6581 -2.1324 0.0014
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001117991536.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:15:54
Heat of formation + Delta-G solvation = 19.504771 kcal
Electronic energy + Delta-G solvation = -27228.643071 eV
Core-core repulsion = 23806.120898 eV
Total energy + Delta-G solvation = -3422.522173 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-41.15660 -40.17127 -37.89223 -35.10936 -34.21233 -33.37678 -32.50310 -31.76084
-29.96481 -29.43558 -27.35587 -26.81782 -24.98682 -24.54455 -23.58172 -22.62234
-21.67712 -20.63088 -20.27534 -18.75930 -17.47815 -17.34209 -16.70640 -16.51069
-16.35952 -16.11588 -15.90966 -15.54090 -15.04258 -14.77517 -14.57892 -14.41951
-14.25941 -14.05004 -14.00468 -13.76772 -13.71713 -13.37808 -13.18832 -13.09913
-12.87839 -12.78849 -12.62003 -12.37456 -12.30191 -12.22352 -12.03603 -11.82437
-11.72684 -11.65235 -11.57347 -11.39104 -11.29223 -10.99342 -10.65026 -9.76285
-9.44218 -9.16094 -8.70622 -8.15988 -6.14301 0.44322 0.56133 1.36680
1.37951 1.48563 2.42236 2.72016 3.06343 3.18993 3.24579 3.81101
3.92503 3.95110 4.03986 4.07322 4.13731 4.19520 4.23476 4.27220
4.31728 4.42318 4.47184 4.52008 4.56026 4.61033 4.63658 4.66799
4.75305 4.80143 4.85449 4.85968 4.87800 4.91222 5.01437 5.05923
5.10492 5.11683 5.13715 5.24396 5.31434 5.32728 5.38378 5.38611
5.54281 5.55681 5.75383 5.76873 5.77010 6.14608 6.16087 6.23812
6.40546 6.56214 6.77582 6.93763 7.46019 9.01406
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.023050 B = 0.002739 C = 0.002702
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1214.435556 B =10220.174519 C =10360.763692
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C -0.098 4.098
3 C -0.131 4.131
4 C -0.118 4.118
5 C -0.091 4.091
6 C 0.100 3.900
7 N -0.547 5.547
8 C 0.077 3.923
9 C -0.118 4.118
10 C 0.078 3.922
11 N -0.548 5.548
12 C 0.104 3.896
13 H 0.062 0.938
14 C -0.172 4.172
15 C -0.005 4.005
16 C -0.485 4.485
17 H 0.036 0.964
18 C -0.003 4.003
19 N -0.958 5.958
20 Si 0.940 3.060
21 H -0.273 1.273
22 H -0.290 1.290
23 H -0.248 1.248
24 C 0.046 3.954
25 C 0.067 3.933
26 C -0.108 4.108
27 C -0.131 4.131
28 H 0.078 0.922
29 H 0.072 0.928
30 H 0.072 0.928
31 H 0.135 0.865
32 H 0.121 0.879
33 H 0.041 0.959
34 H 0.089 0.911
35 H 0.072 0.928
36 H 0.031 0.969
37 H 0.058 0.942
38 H 0.082 0.918
39 H 0.056 0.944
40 H 0.025 0.975
41 H 0.063 0.937
42 H 0.059 0.941
43 H 0.055 0.945
44 H 0.019 0.981
45 H 0.016 0.984
46 H 0.260 0.740
47 H 0.041 0.959
48 H 0.075 0.925
49 H 0.061 0.939
50 H 0.085 0.915
51 H 0.126 0.874
52 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.662 4.419 -16.951 27.088
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C -0.099 4.099
3 C -0.149 4.149
4 C -0.137 4.137
5 C -0.091 4.091
6 C -0.027 4.027
7 N -0.272 5.272
8 C -0.050 4.050
9 C -0.156 4.156
10 C -0.051 4.051
11 N -0.271 5.271
12 C -0.004 4.004
13 H 0.081 0.919
14 C -0.231 4.231
15 C -0.043 4.043
16 C -0.523 4.523
17 H 0.055 0.945
18 C -0.198 4.198
19 N -0.600 5.600
20 Si 0.765 3.235
21 H -0.199 1.199
22 H -0.216 1.216
23 H -0.172 1.172
24 C -0.082 4.082
25 C -0.061 4.061
26 C -0.126 4.126
27 C -0.149 4.149
28 H 0.097 0.903
29 H 0.090 0.910
30 H 0.091 0.909
31 H 0.153 0.847
32 H 0.139 0.861
33 H 0.059 0.941
34 H 0.107 0.893
35 H 0.090 0.910
36 H 0.049 0.951
37 H 0.076 0.924
38 H 0.101 0.899
39 H 0.074 0.926
40 H 0.042 0.958
41 H 0.082 0.918
42 H 0.078 0.922
43 H 0.074 0.926
44 H 0.038 0.962
45 H 0.034 0.966
46 H 0.069 0.931
47 H 0.059 0.941
48 H 0.093 0.907
49 H 0.079 0.921
50 H 0.103 0.897
51 H 0.144 0.856
52 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges -20.785 3.622 -16.269 26.642
hybrid contribution 0.954 1.447 0.148 1.739
sum -19.831 5.069 -16.120 26.054
Atomic orbital electron populations
1.20819 0.89657 1.03420 1.02977 1.20249 0.97370 0.93073 0.99167
1.21234 0.93998 0.98376 1.01277 1.21177 0.94693 0.97570 1.00240
1.19824 0.95091 0.93611 1.00587 1.21053 0.91058 1.01747 0.88884
1.62061 1.15124 1.34706 1.15262 1.21718 0.99596 0.89484 0.94158
1.21547 0.95638 1.00938 0.97511 1.21013 0.91845 0.93693 0.98588
1.58870 1.03273 1.41626 1.23374 1.21500 0.90094 0.92571 0.96241
0.91922 1.22385 1.02379 0.98201 1.00162 1.19669 0.95456 0.95416
0.93746 1.21258 1.39745 0.93206 0.98094 0.94528 1.25917 0.95839
0.99013 0.99003 1.70080 1.48452 1.26713 1.14795 0.85806 0.77870
0.80990 0.78796 1.19877 1.21573 1.17150 1.22306 0.99606 0.97138
0.89145 1.21925 0.85063 0.96521 1.02586 1.21181 0.94506 0.97862
0.99079 1.21275 0.94107 0.98396 1.01146 0.90335 0.90950 0.90943
0.84749 0.86091 0.94066 0.89279 0.91013 0.95053 0.92355 0.89932
0.92608 0.95778 0.91752 0.92199 0.92560 0.96232 0.96621 0.93134
0.94121 0.90675 0.92052 0.89716 0.85592 0.84724
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.27 10.01 71.23 0.71 -0.56 16
2 C -0.10 -1.67 5.88 -19.87 -0.12 -1.79 16
3 C -0.13 -2.31 9.70 22.27 0.22 -2.09 16
4 C -0.12 -2.31 8.26 22.27 0.18 -2.13 16
5 C -0.09 -1.90 4.89 -19.87 -0.10 -2.00 16
6 C 0.10 2.11 4.99 85.56 0.43 2.54 16
7 N -0.55 -14.18 4.73 -904.13 -4.27 -18.46 16
8 C 0.08 2.00 4.19 85.35 0.36 2.36 16
9 C -0.12 -3.61 5.68 30.38 0.17 -3.44 16
10 C 0.08 2.62 4.11 88.05 0.36 2.98 16
11 N -0.55 -19.90 3.63 -886.89 -3.22 -23.12 16
12 C 0.10 3.94 2.20 44.91 0.10 4.04 16
13 H 0.06 2.50 7.68 -2.39 -0.02 2.48 16
14 C -0.17 -5.11 8.49 71.98 0.61 -4.50 16
15 C -0.01 -0.25 3.41 29.85 0.10 -0.15 16
16 C -0.48 -27.92 9.39 25.60 0.24 -27.68 16
17 H 0.04 2.36 7.99 -2.91 -0.02 2.34 16
18 C 0.00 -0.18 5.47 84.65 0.46 0.29 16
19 N -0.96 -61.62 13.96 21.45 0.30 -61.32 16
20 Si 0.94 45.34 27.47 68.60 1.88 47.23 16
21 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16
22 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16
23 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16
24 C 0.05 1.36 4.68 85.43 0.40 1.76 16
25 C 0.07 1.92 5.25 85.42 0.45 2.37 16
26 C -0.11 -2.17 9.70 22.27 0.22 -1.96 16
27 C -0.13 -2.36 9.70 22.27 0.22 -2.14 16
28 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16
29 H 0.07 0.72 8.09 -2.39 -0.02 0.70 16
30 H 0.07 0.72 8.09 -2.39 -0.02 0.70 16
31 H 0.13 1.83 8.06 -2.91 -0.02 1.80 16
32 H 0.12 2.17 8.03 -2.91 -0.02 2.14 16
33 H 0.04 0.84 7.67 -2.38 -0.02 0.83 16
34 H 0.09 1.72 7.64 -2.39 -0.02 1.70 16
35 H 0.07 1.81 6.92 -2.39 -0.02 1.79 16
36 H 0.03 0.78 6.28 -2.38 -0.01 0.77 16
37 H 0.06 2.14 7.19 -2.39 -0.02 2.12 16
38 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16
39 H 0.06 2.16 5.86 -2.39 -0.01 2.14 16
40 H 0.02 0.74 6.00 -2.39 -0.01 0.72 16
41 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16
42 H 0.06 1.55 7.63 -2.39 -0.02 1.53 16
43 H 0.06 1.63 6.53 -2.39 -0.02 1.62 16
44 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16
45 H 0.02 0.72 5.58 -2.39 -0.01 0.71 16
46 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16
47 H 0.04 1.09 6.35 -2.39 -0.02 1.08 16
48 H 0.07 2.16 7.55 -2.39 -0.02 2.14 16
49 H 0.06 2.23 7.20 -2.39 -0.02 2.21 16
50 H 0.08 2.09 7.58 -2.39 -0.02 2.07 16
51 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16
52 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16
Total: -1.00 -67.55 386.52 0.52 -67.03
By element:
Atomic # 1 Polarization: 19.92 SS G_CDS: 0.82 Total: 20.74 kcal
Atomic # 6 Polarization: -37.11 SS G_CDS: 5.01 Total: -32.10 kcal
Atomic # 7 Polarization: -95.71 SS G_CDS: -7.20 Total: -102.90 kcal
Atomic # 14 Polarization: 45.34 SS G_CDS: 1.88 Total: 47.23 kcal
Total: -67.55 0.52 -67.03 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001117991536.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 86.539 kcal
(2) G-P(sol) polarization free energy of solvation -67.552 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.987 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.035 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.505 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds