Wall clock time and date at job start Tue Mar 31 2020 12:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38241 * 119.99681 * 2 1 4 4 C 1.38239 * 119.99766 * 179.97438 * 3 2 1 5 5 C 1.38240 * 119.99966 * 0.02567 * 4 3 2 6 6 C 1.50695 * 120.00000 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.47373 * 89.99337 * 6 5 4 8 8 C 1.48064 * 110.99895 * 293.95502 * 7 6 5 9 9 C 1.50748 * 112.93335 * 192.21702 * 8 7 6 10 10 C 1.54521 * 108.94342 * 92.65199 * 9 8 7 11 11 N 1.40081 * 111.50682 * 283.99035 * 10 9 8 12 12 C 1.46906 * 110.99852 * 188.14763 * 11 10 9 13 13 H 1.08998 * 109.47121 * 186.04205 * 12 11 10 14 14 C 1.53000 * 109.47029 * 306.04614 * 12 11 10 15 15 C 1.52997 * 109.46848 * 66.04372 * 12 11 10 16 16 C 1.50709 * 109.47215 * 65.00300 * 15 12 11 17 17 H 1.08003 * 119.99478 * 0.02562 * 16 15 12 18 18 C 1.37875 * 120.00176 * 180.02562 * 16 15 12 19 19 N 1.31515 * 119.99977 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99883 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47225 * 90.00467 * 20 18 16 22 22 H 1.48502 * 109.47263 * 210.00101 * 20 18 16 23 23 H 1.48498 * 109.47411 * 330.00545 * 20 18 16 24 24 C 1.47685 * 114.57445 * 61.45320 * 11 10 9 25 25 C 1.47744 * 110.99825 * 166.35244 * 7 6 5 26 26 C 1.38236 * 119.99817 * 0.24420 * 5 4 3 27 27 C 1.38231 * 120.00070 * 179.97438 * 2 1 3 28 28 H 1.09006 * 109.47129 * 89.99747 * 1 2 3 29 29 H 1.08997 * 109.47405 * 209.99786 * 1 2 3 30 30 H 1.09001 * 109.47672 * 330.00152 * 1 2 3 31 31 H 1.08000 * 120.00075 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.99904 * 179.97438 * 4 3 2 33 33 H 1.09004 * 109.46852 * 329.99000 * 6 5 4 34 34 H 1.09000 * 109.47275 * 209.99819 * 6 5 4 35 35 H 1.08995 * 108.79305 * 71.32931 * 8 7 6 36 36 H 1.09005 * 108.70097 * 313.04307 * 8 7 6 37 37 H 1.09001 * 109.55993 * 332.81265 * 9 8 7 38 38 H 1.08998 * 109.55834 * 212.48425 * 9 8 7 39 39 H 1.08998 * 109.07257 * 163.46666 * 10 9 8 40 40 H 1.09002 * 109.06888 * 44.50896 * 10 9 8 41 41 H 1.09002 * 109.46786 * 180.02562 * 14 12 11 42 42 H 1.08999 * 109.46789 * 299.99921 * 14 12 11 43 43 H 1.08998 * 109.47056 * 60.00115 * 14 12 11 44 44 H 1.09001 * 109.46957 * 184.99642 * 15 12 11 45 45 H 1.08994 * 109.47537 * 305.00287 * 15 12 11 46 46 H 0.96995 * 119.99811 * 179.97438 * 19 18 16 47 47 H 1.09001 * 109.73990 * 38.33022 * 24 11 10 48 48 H 1.09000 * 109.74113 * 159.03994 * 24 11 10 49 49 H 1.08997 * 108.99496 * 205.57205 * 25 7 6 50 50 H 1.09000 * 108.99284 * 324.39941 * 25 7 6 51 51 H 1.08002 * 119.99518 * 179.72869 * 26 5 4 52 52 H 1.07999 * 119.99940 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0001 0.0005 6 6 5.7786 0.0001 0.0005 7 7 6.2684 0.0002 1.3855 8 6 5.9161 1.2636 2.0727 9 6 6.6379 1.4398 3.3844 10 6 7.9378 2.2382 3.1383 11 7 8.9272 1.4399 2.5501 12 6 10.2131 2.1485 2.4977 13 1 10.9351 1.5504 1.9419 14 6 10.0240 3.4974 1.8009 15 6 10.7277 2.3771 3.9203 16 6 11.0305 1.0487 4.5645 17 1 10.8721 0.1331 4.0141 18 6 11.5096 1.0024 5.8565 19 7 11.7734 -0.1569 6.4188 20 14 11.7842 2.5861 6.8082 21 1 10.5449 2.9422 7.5448 22 1 12.8967 2.3971 7.7735 23 1 12.1291 3.6782 5.8630 24 6 8.5692 0.8945 1.2252 25 6 7.7086 -0.3252 1.4378 26 6 3.5805 -1.1971 -0.0051 27 6 2.1981 -1.1971 0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6580 2.1325 -0.0004 32 1 4.1204 2.1326 0.0001 33 1 6.1419 0.8900 -0.5135 34 1 6.1420 -0.8899 -0.5133 35 1 4.8422 1.2744 2.2588 36 1 6.1671 2.0988 1.4189 37 1 6.8831 0.4625 3.8001 38 1 6.0011 1.9852 4.0809 39 1 8.3071 2.6197 4.0902 40 1 7.7201 3.0788 2.4794 41 1 10.9781 4.0229 1.7616 42 1 9.6573 3.3345 0.7874 43 1 9.3019 4.0955 2.3568 44 1 11.6354 2.9794 3.8858 45 1 9.9676 2.8982 4.5023 46 1 12.1108 -0.1894 7.3276 47 1 8.0149 1.6416 0.6571 48 1 9.4740 0.6168 0.6846 49 1 7.9396 -0.7569 2.4116 50 1 7.9352 -1.0573 0.6628 51 1 4.1205 -2.1323 -0.0095 52 1 1.6581 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117991536.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:54 Heat of formation + Delta-G solvation = 19.504771 kcal Electronic energy + Delta-G solvation = -27228.643071 eV Core-core repulsion = 23806.120898 eV Total energy + Delta-G solvation = -3422.522173 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.15660 -40.17127 -37.89223 -35.10936 -34.21233 -33.37678 -32.50310 -31.76084 -29.96481 -29.43558 -27.35587 -26.81782 -24.98682 -24.54455 -23.58172 -22.62234 -21.67712 -20.63088 -20.27534 -18.75930 -17.47815 -17.34209 -16.70640 -16.51069 -16.35952 -16.11588 -15.90966 -15.54090 -15.04258 -14.77517 -14.57892 -14.41951 -14.25941 -14.05004 -14.00468 -13.76772 -13.71713 -13.37808 -13.18832 -13.09913 -12.87839 -12.78849 -12.62003 -12.37456 -12.30191 -12.22352 -12.03603 -11.82437 -11.72684 -11.65235 -11.57347 -11.39104 -11.29223 -10.99342 -10.65026 -9.76285 -9.44218 -9.16094 -8.70622 -8.15988 -6.14301 0.44322 0.56133 1.36680 1.37951 1.48563 2.42236 2.72016 3.06343 3.18993 3.24579 3.81101 3.92503 3.95110 4.03986 4.07322 4.13731 4.19520 4.23476 4.27220 4.31728 4.42318 4.47184 4.52008 4.56026 4.61033 4.63658 4.66799 4.75305 4.80143 4.85449 4.85968 4.87800 4.91222 5.01437 5.05923 5.10492 5.11683 5.13715 5.24396 5.31434 5.32728 5.38378 5.38611 5.54281 5.55681 5.75383 5.76873 5.77010 6.14608 6.16087 6.23812 6.40546 6.56214 6.77582 6.93763 7.46019 9.01406 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023050 B = 0.002739 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.435556 B =10220.174519 C =10360.763692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.098 4.098 3 C -0.131 4.131 4 C -0.118 4.118 5 C -0.091 4.091 6 C 0.100 3.900 7 N -0.547 5.547 8 C 0.077 3.923 9 C -0.118 4.118 10 C 0.078 3.922 11 N -0.548 5.548 12 C 0.104 3.896 13 H 0.062 0.938 14 C -0.172 4.172 15 C -0.005 4.005 16 C -0.485 4.485 17 H 0.036 0.964 18 C -0.003 4.003 19 N -0.958 5.958 20 Si 0.940 3.060 21 H -0.273 1.273 22 H -0.290 1.290 23 H -0.248 1.248 24 C 0.046 3.954 25 C 0.067 3.933 26 C -0.108 4.108 27 C -0.131 4.131 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.135 0.865 32 H 0.121 0.879 33 H 0.041 0.959 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.031 0.969 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.025 0.975 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.019 0.981 45 H 0.016 0.984 46 H 0.260 0.740 47 H 0.041 0.959 48 H 0.075 0.925 49 H 0.061 0.939 50 H 0.085 0.915 51 H 0.126 0.874 52 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.662 4.419 -16.951 27.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.149 4.149 4 C -0.137 4.137 5 C -0.091 4.091 6 C -0.027 4.027 7 N -0.272 5.272 8 C -0.050 4.050 9 C -0.156 4.156 10 C -0.051 4.051 11 N -0.271 5.271 12 C -0.004 4.004 13 H 0.081 0.919 14 C -0.231 4.231 15 C -0.043 4.043 16 C -0.523 4.523 17 H 0.055 0.945 18 C -0.198 4.198 19 N -0.600 5.600 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.216 1.216 23 H -0.172 1.172 24 C -0.082 4.082 25 C -0.061 4.061 26 C -0.126 4.126 27 C -0.149 4.149 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.153 0.847 32 H 0.139 0.861 33 H 0.059 0.941 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.042 0.958 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.038 0.962 45 H 0.034 0.966 46 H 0.069 0.931 47 H 0.059 0.941 48 H 0.093 0.907 49 H 0.079 0.921 50 H 0.103 0.897 51 H 0.144 0.856 52 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.785 3.622 -16.269 26.642 hybrid contribution 0.954 1.447 0.148 1.739 sum -19.831 5.069 -16.120 26.054 Atomic orbital electron populations 1.20819 0.89657 1.03420 1.02977 1.20249 0.97370 0.93073 0.99167 1.21234 0.93998 0.98376 1.01277 1.21177 0.94693 0.97570 1.00240 1.19824 0.95091 0.93611 1.00587 1.21053 0.91058 1.01747 0.88884 1.62061 1.15124 1.34706 1.15262 1.21718 0.99596 0.89484 0.94158 1.21547 0.95638 1.00938 0.97511 1.21013 0.91845 0.93693 0.98588 1.58870 1.03273 1.41626 1.23374 1.21500 0.90094 0.92571 0.96241 0.91922 1.22385 1.02379 0.98201 1.00162 1.19669 0.95456 0.95416 0.93746 1.21258 1.39745 0.93206 0.98094 0.94528 1.25917 0.95839 0.99013 0.99003 1.70080 1.48452 1.26713 1.14795 0.85806 0.77870 0.80990 0.78796 1.19877 1.21573 1.17150 1.22306 0.99606 0.97138 0.89145 1.21925 0.85063 0.96521 1.02586 1.21181 0.94506 0.97862 0.99079 1.21275 0.94107 0.98396 1.01146 0.90335 0.90950 0.90943 0.84749 0.86091 0.94066 0.89279 0.91013 0.95053 0.92355 0.89932 0.92608 0.95778 0.91752 0.92199 0.92560 0.96232 0.96621 0.93134 0.94121 0.90675 0.92052 0.89716 0.85592 0.84724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.01 71.23 0.71 -0.56 16 2 C -0.10 -1.67 5.88 -19.87 -0.12 -1.79 16 3 C -0.13 -2.31 9.70 22.27 0.22 -2.09 16 4 C -0.12 -2.31 8.26 22.27 0.18 -2.13 16 5 C -0.09 -1.90 4.89 -19.87 -0.10 -2.00 16 6 C 0.10 2.11 4.99 85.56 0.43 2.54 16 7 N -0.55 -14.18 4.73 -904.13 -4.27 -18.46 16 8 C 0.08 2.00 4.19 85.35 0.36 2.36 16 9 C -0.12 -3.61 5.68 30.38 0.17 -3.44 16 10 C 0.08 2.62 4.11 88.05 0.36 2.98 16 11 N -0.55 -19.90 3.63 -886.89 -3.22 -23.12 16 12 C 0.10 3.94 2.20 44.91 0.10 4.04 16 13 H 0.06 2.50 7.68 -2.39 -0.02 2.48 16 14 C -0.17 -5.11 8.49 71.98 0.61 -4.50 16 15 C -0.01 -0.25 3.41 29.85 0.10 -0.15 16 16 C -0.48 -27.92 9.39 25.60 0.24 -27.68 16 17 H 0.04 2.36 7.99 -2.91 -0.02 2.34 16 18 C 0.00 -0.18 5.47 84.65 0.46 0.29 16 19 N -0.96 -61.62 13.96 21.45 0.30 -61.32 16 20 Si 0.94 45.34 27.47 68.60 1.88 47.23 16 21 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 23 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 24 C 0.05 1.36 4.68 85.43 0.40 1.76 16 25 C 0.07 1.92 5.25 85.42 0.45 2.37 16 26 C -0.11 -2.17 9.70 22.27 0.22 -1.96 16 27 C -0.13 -2.36 9.70 22.27 0.22 -2.14 16 28 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.07 0.72 8.09 -2.39 -0.02 0.70 16 30 H 0.07 0.72 8.09 -2.39 -0.02 0.70 16 31 H 0.13 1.83 8.06 -2.91 -0.02 1.80 16 32 H 0.12 2.17 8.03 -2.91 -0.02 2.14 16 33 H 0.04 0.84 7.67 -2.38 -0.02 0.83 16 34 H 0.09 1.72 7.64 -2.39 -0.02 1.70 16 35 H 0.07 1.81 6.92 -2.39 -0.02 1.79 16 36 H 0.03 0.78 6.28 -2.38 -0.01 0.77 16 37 H 0.06 2.14 7.19 -2.39 -0.02 2.12 16 38 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.06 2.16 5.86 -2.39 -0.01 2.14 16 40 H 0.02 0.74 6.00 -2.39 -0.01 0.72 16 41 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.06 1.55 7.63 -2.39 -0.02 1.53 16 43 H 0.06 1.63 6.53 -2.39 -0.02 1.62 16 44 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 45 H 0.02 0.72 5.58 -2.39 -0.01 0.71 16 46 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 47 H 0.04 1.09 6.35 -2.39 -0.02 1.08 16 48 H 0.07 2.16 7.55 -2.39 -0.02 2.14 16 49 H 0.06 2.23 7.20 -2.39 -0.02 2.21 16 50 H 0.08 2.09 7.58 -2.39 -0.02 2.07 16 51 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 52 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -67.55 386.52 0.52 -67.03 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.82 Total: 20.74 kcal Atomic # 6 Polarization: -37.11 SS G_CDS: 5.01 Total: -32.10 kcal Atomic # 7 Polarization: -95.71 SS G_CDS: -7.20 Total: -102.90 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.88 Total: 47.23 kcal Total: -67.55 0.52 -67.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117991536.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.539 kcal (2) G-P(sol) polarization free energy of solvation -67.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds