Wall clock time and date at job start Tue Mar 31 2020 12:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38230 * 119.99613 * 2 1 4 4 C 1.38241 * 119.99430 * 179.97438 * 3 2 1 5 5 C 1.38234 * 120.00156 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99821 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.47250 * 89.99828 * 6 5 4 8 8 C 1.48065 * 110.99753 * 293.95409 * 7 6 5 9 9 C 1.50746 * 112.93277 * 192.21702 * 8 7 6 10 10 C 1.54515 * 108.94481 * 92.64732 * 9 8 7 11 11 N 1.40075 * 111.51224 * 283.99035 * 10 9 8 12 12 C 1.46904 * 111.00141 * 188.14270 * 11 10 9 13 13 H 1.09003 * 109.46556 * 48.02598 * 12 11 10 14 14 C 1.52995 * 109.47322 * 288.02181 * 12 11 10 15 15 C 1.53003 * 109.46967 * 168.01630 * 12 11 10 16 16 C 1.50700 * 109.47135 * 296.86477 * 15 12 11 17 17 H 1.07994 * 120.00304 * 354.99000 * 16 15 12 18 18 C 1.37880 * 119.99386 * 174.71381 * 16 15 12 19 19 N 1.31512 * 120.00295 * 0.28128 * 18 16 15 20 20 Si 1.86796 * 119.99748 * 180.27633 * 18 16 15 21 21 H 1.48510 * 109.47181 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47284 * 119.99980 * 20 18 16 23 23 H 1.48503 * 109.47227 * 240.00173 * 20 18 16 24 24 C 1.47692 * 114.57240 * 61.44908 * 11 10 9 25 25 C 1.47748 * 110.99984 * 166.35270 * 7 6 5 26 26 C 1.38233 * 119.99906 * 0.25147 * 5 4 3 27 27 C 1.38231 * 119.99967 * 359.47683 * 26 5 4 28 28 H 1.08994 * 109.47625 * 90.00381 * 1 2 3 29 29 H 1.09000 * 109.47232 * 210.00759 * 1 2 3 30 30 H 1.09000 * 109.47199 * 329.99805 * 1 2 3 31 31 H 1.07993 * 120.00617 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.99477 * 179.97438 * 4 3 2 33 33 H 1.09005 * 109.47164 * 329.99405 * 6 5 4 34 34 H 1.09000 * 109.47154 * 209.99855 * 6 5 4 35 35 H 1.08992 * 108.79261 * 71.32843 * 8 7 6 36 36 H 1.08998 * 108.70211 * 313.03980 * 8 7 6 37 37 H 1.09004 * 109.56012 * 332.81042 * 9 8 7 38 38 H 1.08996 * 109.64823 * 212.54182 * 9 8 7 39 39 H 1.09001 * 109.07448 * 163.46364 * 10 9 8 40 40 H 1.09004 * 109.06737 * 44.51464 * 10 9 8 41 41 H 1.09000 * 109.47213 * 64.65334 * 14 12 11 42 42 H 1.09006 * 109.47013 * 184.65018 * 14 12 11 43 43 H 1.08998 * 109.47517 * 304.64929 * 14 12 11 44 44 H 1.09003 * 109.46917 * 176.86801 * 15 12 11 45 45 H 1.08998 * 109.46958 * 56.86733 * 15 12 11 46 46 H 0.97002 * 120.00272 * 180.02562 * 19 18 16 47 47 H 1.09001 * 109.73141 * 38.33753 * 24 11 10 48 48 H 1.09000 * 109.74163 * 159.03513 * 24 11 10 49 49 H 1.08999 * 108.99224 * 205.56916 * 25 7 6 50 50 H 1.08999 * 108.99008 * 324.31607 * 25 7 6 51 51 H 1.08001 * 119.99850 * 179.72645 * 26 5 4 52 52 H 1.08004 * 120.00004 * 180.30182 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7787 0.0000 0.0005 7 7 6.2684 0.0001 1.3855 8 6 5.9161 1.2633 2.0728 9 6 6.6378 1.4395 3.3844 10 6 7.9377 2.2378 3.1385 11 7 8.9272 1.4396 2.5504 12 6 10.2130 2.1481 2.4980 13 1 10.4242 2.5900 3.4718 14 6 10.1443 3.2521 1.4409 15 6 11.3244 1.1617 2.1338 16 6 11.4434 0.1178 3.2142 17 1 10.8485 0.1994 4.1118 18 6 12.3076 -0.9445 3.0540 19 7 13.0321 -1.0439 1.9610 20 14 12.4495 -2.2427 4.3897 21 1 11.5347 -1.9031 5.5092 22 1 12.0786 -3.5685 3.8329 23 1 13.8474 -2.2888 4.8887 24 6 8.5692 0.8942 1.2253 25 6 7.7086 -0.3253 1.4379 26 6 3.5805 -1.1971 -0.0053 27 6 2.1982 -1.1971 -0.0001 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6582 2.1324 -0.0004 32 1 4.1204 2.1325 0.0001 33 1 6.1420 0.8900 -0.5134 34 1 6.1420 -0.8900 -0.5133 35 1 4.8422 1.2742 2.2588 36 1 6.1671 2.0986 1.4191 37 1 6.8830 0.4621 3.8002 38 1 6.0019 1.9838 4.0825 39 1 8.3070 2.6193 4.0904 40 1 7.7200 3.0785 2.4796 41 1 9.4096 3.9987 1.7425 42 1 11.1224 3.7234 1.3437 43 1 9.8520 2.8208 0.4835 44 1 12.2692 1.6972 2.0404 45 1 11.0854 0.6786 1.1865 46 1 13.6398 -1.7915 1.8481 47 1 8.0149 1.6414 0.6574 48 1 9.4740 0.6166 0.6847 49 1 7.9395 -0.7571 2.4117 50 1 7.9350 -1.0585 0.6637 51 1 4.1205 -2.1324 -0.0097 52 1 1.6582 -2.1325 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117991537.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:58 Heat of formation + Delta-G solvation = 32.204502 kcal Electronic energy + Delta-G solvation = -27360.795632 eV Core-core repulsion = 23938.824160 eV Total energy + Delta-G solvation = -3421.971471 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -39.98046 -39.14843 -36.51790 -33.78072 -32.75634 -32.11343 -31.02116 -30.54403 -28.91153 -27.32503 -26.45347 -25.26332 -23.87813 -23.15581 -22.73388 -21.09347 -20.67159 -19.74835 -18.67067 -16.40781 -16.19952 -16.15396 -15.66452 -15.42208 -15.12479 -14.71587 -14.56781 -14.20173 -13.91173 -13.88735 -13.49562 -13.14993 -13.06749 -12.81187 -12.65837 -12.40123 -12.16911 -11.97316 -11.92159 -11.69048 -11.60282 -11.31192 -11.25946 -11.15788 -11.00210 -10.95857 -10.75815 -10.62722 -10.45807 -10.29598 -10.15077 -9.80974 -9.16771 -8.97654 -8.94418 -8.61319 -8.24965 -7.99721 -7.31416 -5.87911 -3.85144 1.24009 1.34594 3.39195 3.47024 3.52576 3.59680 4.23354 4.55474 4.59496 4.66927 4.70568 4.86315 4.93477 5.04601 5.13820 5.23009 5.34409 5.35918 5.41440 5.47294 5.49541 5.58762 5.63531 5.65626 5.68481 5.74651 5.76584 5.82337 5.90734 5.97040 5.99276 6.01264 6.01552 6.08571 6.23147 6.29682 6.33241 6.34730 6.48910 6.49156 6.58413 6.61569 6.65747 6.80204 6.93999 6.99399 7.29220 7.38711 7.56621 7.75717 7.99595 8.13315 8.23614 8.59289 9.20488 9.76472 11.24072 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018516 B = 0.003036 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.830542 B = 9219.386164 C = 9920.387140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.094 4.094 3 C -0.123 4.123 4 C -0.110 4.110 5 C -0.073 4.073 6 C 0.094 3.906 7 N -0.541 5.541 8 C 0.067 3.933 9 C -0.123 4.123 10 C 0.076 3.924 11 N -0.526 5.526 12 C 0.091 3.909 13 H 0.067 0.933 14 C -0.181 4.181 15 C 0.028 3.972 16 C -0.485 4.485 17 H 0.060 0.940 18 C 0.051 3.949 19 N -0.904 5.904 20 Si 0.888 3.112 21 H -0.273 1.273 22 H -0.287 1.287 23 H -0.289 1.289 24 C 0.043 3.957 25 C 0.061 3.939 26 C -0.095 4.095 27 C -0.122 4.122 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.038 0.962 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.025 0.975 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.006 0.994 41 H 0.037 0.963 42 H 0.056 0.944 43 H 0.049 0.951 44 H 0.014 0.986 45 H 0.023 0.977 46 H 0.256 0.744 47 H 0.022 0.978 48 H 0.091 0.909 49 H 0.096 0.904 50 H 0.067 0.933 51 H 0.123 0.877 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.767 4.626 -4.935 22.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.141 4.141 4 C -0.129 4.129 5 C -0.074 4.074 6 C -0.034 4.034 7 N -0.266 5.266 8 C -0.061 4.061 9 C -0.161 4.161 10 C -0.054 4.054 11 N -0.249 5.249 12 C -0.016 4.016 13 H 0.085 0.915 14 C -0.240 4.240 15 C -0.008 4.008 16 C -0.523 4.523 17 H 0.078 0.922 18 C -0.148 4.148 19 N -0.546 5.546 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.213 1.213 23 H -0.215 1.215 24 C -0.086 4.086 25 C -0.066 4.066 26 C -0.114 4.114 27 C -0.140 4.140 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.043 0.957 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.024 0.976 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.032 0.968 45 H 0.041 0.959 46 H 0.066 0.934 47 H 0.040 0.960 48 H 0.110 0.890 49 H 0.114 0.886 50 H 0.086 0.914 51 H 0.141 0.859 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.820 3.787 -4.456 22.590 hybrid contribution 0.493 0.623 -0.282 0.843 sum -21.327 4.410 -4.738 22.287 Atomic orbital electron populations 1.20769 0.91512 1.02599 1.02065 1.19878 0.95854 0.93313 1.00377 1.20950 0.94091 0.97357 1.01696 1.21041 0.94099 0.97588 1.00154 1.19819 0.95407 0.93057 0.99093 1.21067 0.90520 1.01395 0.90423 1.62160 1.16591 1.34161 1.13657 1.21811 0.99556 0.89629 0.95056 1.21595 0.95815 1.02271 0.96423 1.21026 0.92359 0.93404 0.98633 1.58992 1.02842 1.39920 1.23115 1.21878 0.90076 0.92806 0.96876 0.91469 1.22509 1.01041 0.99792 1.00655 1.19249 0.91039 0.93116 0.97445 1.21155 1.21037 1.06707 1.03415 0.92222 1.24986 0.96195 0.98146 0.95522 1.69969 1.26866 1.31283 1.26435 0.86599 0.77450 0.81884 0.82415 1.19781 1.21320 1.21513 1.22291 1.00039 0.96008 0.90214 1.22067 0.83567 0.96846 1.04118 1.21023 0.93822 0.97810 0.98735 1.21009 0.94249 0.97348 1.01440 0.91423 0.91679 0.91748 0.86457 0.86588 0.94396 0.89973 0.91613 0.95658 0.89619 0.91491 0.91638 0.97599 0.94384 0.92527 0.93237 0.96785 0.95880 0.93425 0.96042 0.89037 0.88569 0.91410 0.85921 0.86324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.01 0.36 -0.43 16 2 C -0.09 -0.91 5.88 -104.63 -0.62 -1.53 16 3 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 4 C -0.11 -1.22 8.26 -39.58 -0.33 -1.54 16 5 C -0.07 -0.87 4.89 -104.63 -0.51 -1.38 16 6 C 0.09 1.17 4.99 -4.98 -0.02 1.15 16 7 N -0.54 -7.69 4.73 -237.14 -1.12 -8.81 16 8 C 0.07 0.91 4.19 -4.31 -0.02 0.89 16 9 C -0.12 -1.74 5.68 -27.07 -0.15 -1.90 16 10 C 0.08 1.20 4.68 -6.56 -0.03 1.17 16 11 N -0.53 -9.75 3.59 -231.69 -0.83 -10.58 16 12 C 0.09 1.82 2.23 -67.71 -0.15 1.67 16 13 H 0.07 1.38 7.81 -51.93 -0.41 0.97 16 14 C -0.18 -3.12 8.69 37.16 0.32 -2.79 16 15 C 0.03 0.71 4.34 -27.88 -0.12 0.59 16 16 C -0.48 -13.30 8.79 -34.44 -0.30 -13.61 16 17 H 0.06 1.65 7.75 -52.49 -0.41 1.25 16 18 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 19 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 20 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 21 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 C 0.04 0.75 3.73 -4.51 -0.02 0.73 16 25 C 0.06 1.00 5.25 -4.48 -0.02 0.98 16 26 C -0.10 -1.07 9.70 -39.59 -0.38 -1.45 16 27 C -0.12 -1.24 9.70 -39.59 -0.38 -1.63 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 30 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 32 H 0.12 1.20 8.03 -52.49 -0.42 0.78 16 33 H 0.04 0.48 7.67 -51.93 -0.40 0.08 16 34 H 0.08 0.99 7.64 -51.93 -0.40 0.59 16 35 H 0.07 0.87 6.92 -51.93 -0.36 0.51 16 36 H 0.03 0.35 6.28 -51.93 -0.33 0.03 16 37 H 0.09 1.38 7.19 -51.93 -0.37 1.01 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 1.04 7.81 -51.93 -0.41 0.63 16 40 H 0.01 0.10 6.43 -51.93 -0.33 -0.24 16 41 H 0.04 0.59 7.09 -51.93 -0.37 0.22 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.05 0.85 6.69 -51.93 -0.35 0.50 16 44 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.02 0.61 6.01 -51.93 -0.31 0.30 16 46 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 47 H 0.02 0.36 6.15 -51.93 -0.32 0.04 16 48 H 0.09 1.82 5.52 -51.93 -0.29 1.54 16 49 H 0.10 1.81 7.20 -51.93 -0.37 1.43 16 50 H 0.07 1.07 7.58 -51.93 -0.39 0.68 16 51 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 52 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 LS Contribution 389.64 15.07 5.87 5.87 Total: -1.00 -29.36 389.64 -12.39 -41.75 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -9.16 Total: 0.40 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -2.86 Total: -19.37 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: -1.22 Total: -45.57 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.36 -12.39 -41.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117991537.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.951 kcal (2) G-P(sol) polarization free energy of solvation -29.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds