Wall clock time and date at job start Tue Mar 31 2020 12:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38230 * 119.99613 * 2 1 4 4 C 1.38241 * 119.99430 * 179.97438 * 3 2 1 5 5 C 1.38234 * 120.00156 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99821 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.47250 * 89.99828 * 6 5 4 8 8 C 1.48065 * 110.99753 * 293.95409 * 7 6 5 9 9 C 1.50746 * 112.93277 * 192.21702 * 8 7 6 10 10 C 1.54515 * 108.94481 * 92.64732 * 9 8 7 11 11 N 1.40075 * 111.51224 * 283.99035 * 10 9 8 12 12 C 1.46904 * 111.00141 * 188.14270 * 11 10 9 13 13 H 1.09003 * 109.46556 * 48.02598 * 12 11 10 14 14 C 1.52995 * 109.47322 * 288.02181 * 12 11 10 15 15 C 1.53003 * 109.46967 * 168.01630 * 12 11 10 16 16 C 1.50700 * 109.47135 * 296.86477 * 15 12 11 17 17 H 1.07994 * 120.00304 * 354.99000 * 16 15 12 18 18 C 1.37880 * 119.99386 * 174.71381 * 16 15 12 19 19 N 1.31512 * 120.00295 * 0.28128 * 18 16 15 20 20 Si 1.86796 * 119.99748 * 180.27633 * 18 16 15 21 21 H 1.48510 * 109.47181 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47284 * 119.99980 * 20 18 16 23 23 H 1.48503 * 109.47227 * 240.00173 * 20 18 16 24 24 C 1.47692 * 114.57240 * 61.44908 * 11 10 9 25 25 C 1.47748 * 110.99984 * 166.35270 * 7 6 5 26 26 C 1.38233 * 119.99906 * 0.25147 * 5 4 3 27 27 C 1.38231 * 119.99967 * 359.47683 * 26 5 4 28 28 H 1.08994 * 109.47625 * 90.00381 * 1 2 3 29 29 H 1.09000 * 109.47232 * 210.00759 * 1 2 3 30 30 H 1.09000 * 109.47199 * 329.99805 * 1 2 3 31 31 H 1.07993 * 120.00617 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.99477 * 179.97438 * 4 3 2 33 33 H 1.09005 * 109.47164 * 329.99405 * 6 5 4 34 34 H 1.09000 * 109.47154 * 209.99855 * 6 5 4 35 35 H 1.08992 * 108.79261 * 71.32843 * 8 7 6 36 36 H 1.08998 * 108.70211 * 313.03980 * 8 7 6 37 37 H 1.09004 * 109.56012 * 332.81042 * 9 8 7 38 38 H 1.08996 * 109.64823 * 212.54182 * 9 8 7 39 39 H 1.09001 * 109.07448 * 163.46364 * 10 9 8 40 40 H 1.09004 * 109.06737 * 44.51464 * 10 9 8 41 41 H 1.09000 * 109.47213 * 64.65334 * 14 12 11 42 42 H 1.09006 * 109.47013 * 184.65018 * 14 12 11 43 43 H 1.08998 * 109.47517 * 304.64929 * 14 12 11 44 44 H 1.09003 * 109.46917 * 176.86801 * 15 12 11 45 45 H 1.08998 * 109.46958 * 56.86733 * 15 12 11 46 46 H 0.97002 * 120.00272 * 180.02562 * 19 18 16 47 47 H 1.09001 * 109.73141 * 38.33753 * 24 11 10 48 48 H 1.09000 * 109.74163 * 159.03513 * 24 11 10 49 49 H 1.08999 * 108.99224 * 205.56916 * 25 7 6 50 50 H 1.08999 * 108.99008 * 324.31607 * 25 7 6 51 51 H 1.08001 * 119.99850 * 179.72645 * 26 5 4 52 52 H 1.08004 * 120.00004 * 180.30182 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7787 0.0000 0.0005 7 7 6.2684 0.0001 1.3855 8 6 5.9161 1.2633 2.0728 9 6 6.6378 1.4395 3.3844 10 6 7.9377 2.2378 3.1385 11 7 8.9272 1.4396 2.5504 12 6 10.2130 2.1481 2.4980 13 1 10.4242 2.5900 3.4718 14 6 10.1443 3.2521 1.4409 15 6 11.3244 1.1617 2.1338 16 6 11.4434 0.1178 3.2142 17 1 10.8485 0.1994 4.1118 18 6 12.3076 -0.9445 3.0540 19 7 13.0321 -1.0439 1.9610 20 14 12.4495 -2.2427 4.3897 21 1 11.5347 -1.9031 5.5092 22 1 12.0786 -3.5685 3.8329 23 1 13.8474 -2.2888 4.8887 24 6 8.5692 0.8942 1.2253 25 6 7.7086 -0.3253 1.4379 26 6 3.5805 -1.1971 -0.0053 27 6 2.1982 -1.1971 -0.0001 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6582 2.1324 -0.0004 32 1 4.1204 2.1325 0.0001 33 1 6.1420 0.8900 -0.5134 34 1 6.1420 -0.8900 -0.5133 35 1 4.8422 1.2742 2.2588 36 1 6.1671 2.0986 1.4191 37 1 6.8830 0.4621 3.8002 38 1 6.0019 1.9838 4.0825 39 1 8.3070 2.6193 4.0904 40 1 7.7200 3.0785 2.4796 41 1 9.4096 3.9987 1.7425 42 1 11.1224 3.7234 1.3437 43 1 9.8520 2.8208 0.4835 44 1 12.2692 1.6972 2.0404 45 1 11.0854 0.6786 1.1865 46 1 13.6398 -1.7915 1.8481 47 1 8.0149 1.6414 0.6574 48 1 9.4740 0.6166 0.6847 49 1 7.9395 -0.7571 2.4117 50 1 7.9350 -1.0585 0.6637 51 1 4.1205 -2.1324 -0.0097 52 1 1.6582 -2.1325 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117991537.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:57 Heat of formation + Delta-G solvation = 16.836714 kcal Electronic energy + Delta-G solvation = -27361.462029 eV Core-core repulsion = 23938.824160 eV Total energy + Delta-G solvation = -3422.637869 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.13925 -40.15835 -37.79257 -35.25764 -34.19315 -33.46036 -32.06667 -31.73462 -30.03113 -29.10150 -27.49827 -26.55102 -25.09839 -24.84494 -23.54574 -22.47682 -21.59906 -21.01458 -20.13885 -18.31918 -17.58220 -17.33164 -16.67557 -16.53484 -16.33731 -16.09598 -15.86691 -15.62239 -15.06096 -14.73948 -14.52123 -14.31639 -14.26709 -14.08314 -13.82980 -13.61915 -13.45030 -13.25314 -13.14585 -13.07025 -12.85886 -12.78737 -12.59235 -12.44322 -12.35845 -12.34294 -12.12229 -11.96811 -11.90862 -11.71450 -11.47026 -11.31915 -11.06230 -10.95241 -10.44798 -9.76717 -9.44506 -9.16384 -8.72500 -8.07413 -6.10892 0.43960 0.55746 1.41717 1.43781 1.55972 2.49238 2.71942 3.11310 3.19106 3.29951 3.80290 3.91472 3.94592 4.05250 4.08227 4.17673 4.19252 4.26001 4.27437 4.33461 4.44528 4.49898 4.53450 4.56379 4.60676 4.65156 4.67184 4.76015 4.81961 4.86874 4.88225 4.91011 5.00145 5.01436 5.02937 5.10864 5.17045 5.22713 5.24170 5.32650 5.38149 5.40547 5.53263 5.55271 5.73678 5.75074 5.77254 5.92815 6.14077 6.16142 6.21684 6.35876 6.52904 6.82610 7.02270 7.54482 9.04669 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018516 B = 0.003036 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.830542 B = 9219.386164 C = 9920.387140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.097 4.097 3 C -0.129 4.129 4 C -0.118 4.118 5 C -0.089 4.089 6 C 0.097 3.903 7 N -0.542 5.542 8 C 0.072 3.928 9 C -0.116 4.116 10 C 0.075 3.925 11 N -0.541 5.541 12 C 0.099 3.901 13 H 0.063 0.937 14 C -0.170 4.170 15 C 0.035 3.965 16 C -0.489 4.489 17 H 0.055 0.945 18 C -0.002 4.002 19 N -0.939 5.939 20 Si 0.952 3.048 21 H -0.266 1.266 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.055 3.945 25 C 0.072 3.928 26 C -0.108 4.108 27 C -0.130 4.130 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.137 0.863 32 H 0.121 0.879 33 H 0.037 0.963 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.026 0.974 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.017 0.983 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.047 0.953 44 H -0.012 1.012 45 H 0.002 0.998 46 H 0.257 0.743 47 H 0.034 0.966 48 H 0.061 0.939 49 H 0.069 0.931 50 H 0.067 0.933 51 H 0.123 0.877 52 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.440 5.268 -4.391 25.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.136 4.136 5 C -0.089 4.089 6 C -0.030 4.030 7 N -0.267 5.267 8 C -0.055 4.055 9 C -0.154 4.154 10 C -0.054 4.054 11 N -0.265 5.265 12 C -0.009 4.009 13 H 0.082 0.918 14 C -0.229 4.229 15 C -0.002 4.002 16 C -0.528 4.528 17 H 0.073 0.927 18 C -0.198 4.198 19 N -0.582 5.582 20 Si 0.778 3.222 21 H -0.191 1.191 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.074 4.074 25 C -0.056 4.056 26 C -0.127 4.127 27 C -0.148 4.148 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.155 0.845 32 H 0.139 0.861 33 H 0.055 0.945 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.045 0.955 37 H 0.083 0.917 38 H 0.111 0.889 39 H 0.084 0.916 40 H 0.035 0.965 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.007 0.993 45 H 0.021 0.979 46 H 0.066 0.934 47 H 0.052 0.948 48 H 0.079 0.921 49 H 0.088 0.912 50 H 0.086 0.914 51 H 0.141 0.859 52 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -24.513 4.440 -3.907 25.217 hybrid contribution 1.269 0.436 -0.474 1.423 sum -23.244 4.875 -4.381 24.150 Atomic orbital electron populations 1.20818 0.89523 1.03505 1.02974 1.20253 0.97417 0.92991 0.99086 1.21230 0.93830 0.98442 1.01155 1.21159 0.94759 0.97415 1.00282 1.19766 0.94671 0.93776 1.00689 1.21045 0.91417 1.01329 0.89224 1.62143 1.14678 1.34870 1.15011 1.21783 0.99915 0.89152 0.94602 1.21560 0.95386 1.01216 0.97197 1.21086 0.92268 0.93569 0.98515 1.58918 1.03010 1.40765 1.23795 1.21597 0.89506 0.92344 0.97458 0.91845 1.22360 1.01881 0.99156 0.99488 1.19108 0.91778 0.93408 0.95920 1.21423 1.20414 1.07268 1.03673 0.92682 1.25769 0.96076 1.00376 0.97611 1.70089 1.27721 1.32115 1.28273 0.85592 0.77524 0.79197 0.79861 1.19071 1.21018 1.21047 1.22130 0.98839 0.96694 0.89695 1.21828 0.85017 0.96246 1.02507 1.21160 0.94602 0.97745 0.99197 1.21267 0.93928 0.98494 1.01107 0.90408 0.90895 0.90787 0.84538 0.86136 0.94502 0.90004 0.90644 0.95550 0.91714 0.88889 0.91559 0.96494 0.91982 0.92462 0.93437 0.99330 0.97932 0.93389 0.94790 0.92074 0.91219 0.91430 0.85875 0.84661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.01 71.24 0.71 -0.53 16 2 C -0.10 -1.66 5.88 -19.87 -0.12 -1.78 16 3 C -0.13 -2.29 9.70 22.27 0.22 -2.07 16 4 C -0.12 -2.40 8.26 22.27 0.18 -2.21 16 5 C -0.09 -2.00 4.89 -19.87 -0.10 -2.10 16 6 C 0.10 2.38 4.99 85.56 0.43 2.81 16 7 N -0.54 -15.13 4.73 -904.17 -4.27 -19.40 16 8 C 0.07 1.84 4.19 85.35 0.36 2.20 16 9 C -0.12 -3.08 5.68 30.38 0.17 -2.91 16 10 C 0.08 2.27 4.68 88.05 0.41 2.68 16 11 N -0.54 -20.03 3.59 -886.92 -3.18 -23.21 16 12 C 0.10 3.98 2.23 44.91 0.10 4.08 16 13 H 0.06 2.59 7.81 -2.39 -0.02 2.57 16 14 C -0.17 -5.71 8.69 71.98 0.63 -5.08 16 15 C 0.03 1.80 4.34 29.85 0.13 1.93 16 16 C -0.49 -27.47 8.79 25.60 0.22 -27.24 16 17 H 0.05 3.09 7.75 -2.91 -0.02 3.07 16 18 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 19 N -0.94 -57.30 13.29 21.45 0.28 -57.01 16 20 Si 0.95 45.63 29.54 68.60 2.03 47.65 16 21 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 22 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 23 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 24 C 0.05 1.94 3.73 85.43 0.32 2.26 16 25 C 0.07 2.39 5.25 85.42 0.45 2.84 16 26 C -0.11 -2.33 9.70 22.27 0.22 -2.12 16 27 C -0.13 -2.41 9.70 22.27 0.22 -2.19 16 28 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.71 8.09 -2.39 -0.02 0.69 16 30 H 0.07 0.70 8.09 -2.39 -0.02 0.68 16 31 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 32 H 0.12 2.27 8.03 -2.91 -0.02 2.25 16 33 H 0.04 0.91 7.67 -2.38 -0.02 0.89 16 34 H 0.08 1.97 7.64 -2.39 -0.02 1.95 16 35 H 0.08 1.82 6.92 -2.39 -0.02 1.80 16 36 H 0.03 0.68 6.28 -2.39 -0.01 0.66 16 37 H 0.06 2.04 7.19 -2.38 -0.02 2.02 16 38 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.07 1.99 7.81 -2.39 -0.02 1.98 16 40 H 0.02 0.49 6.43 -2.39 -0.02 0.48 16 41 H 0.06 1.79 7.09 -2.39 -0.02 1.77 16 42 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 43 H 0.05 1.60 6.69 -2.39 -0.02 1.58 16 44 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 45 H 0.00 0.14 6.01 -2.39 -0.01 0.12 16 46 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 47 H 0.03 1.11 6.15 -2.39 -0.01 1.09 16 48 H 0.06 2.54 5.52 -2.39 -0.01 2.53 16 49 H 0.07 2.70 7.20 -2.39 -0.02 2.68 16 50 H 0.07 2.21 7.58 -2.39 -0.02 2.19 16 51 H 0.12 2.52 8.06 -2.91 -0.02 2.50 16 52 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -63.59 389.64 0.74 -62.85 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.87 Total: 18.25 kcal Atomic # 6 Polarization: -34.14 SS G_CDS: 5.01 Total: -29.13 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -7.17 Total: -99.63 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -63.59 0.74 -62.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117991537.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.687 kcal (2) G-P(sol) polarization free energy of solvation -63.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds