Wall clock time and date at job start Tue Mar 31 2020 11:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00036 * 2 1 4 4 N 1.46500 * 109.47427 * 124.99461 * 3 2 1 5 5 C 1.36738 * 127.13416 * 90.02129 * 4 3 2 6 6 C 1.50697 * 126.34894 * 0.02562 * 5 4 3 7 7 C 1.52997 * 109.47466 * 269.71347 * 6 5 4 8 8 C 1.53000 * 109.47060 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.46912 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99776 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00001 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00114 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99955 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46725 * 60.00489 * 13 11 9 15 15 H 1.48505 * 109.46988 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47116 * 300.00464 * 13 11 9 17 17 N 1.30297 * 107.30223 * 179.75880 * 5 4 3 18 18 N 1.28519 * 110.05683 * 0.24391 * 17 5 4 19 19 C 1.31224 * 109.86001 * 359.97438 * 18 17 5 20 20 N 1.38579 * 126.47141 * 180.02562 * 19 18 17 21 21 C 1.46850 * 110.99615 * 236.07024 * 20 19 18 22 22 C 1.50138 * 110.27349 * 174.31470 * 21 20 19 23 23 C 1.29825 * 123.28814 * 342.92578 * 22 21 20 24 24 C 1.50695 * 118.55524 * 180.39537 * 23 22 21 25 25 C 1.50311 * 122.88856 * 0.37188 * 23 22 21 26 26 C 1.47242 * 111.00081 * 358.99597 * 20 19 18 27 27 H 1.08000 * 120.00401 * 180.02562 * 1 2 3 28 28 H 1.08003 * 119.99962 * 0.02562 * 1 2 3 29 29 H 1.07994 * 120.00084 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47603 * 4.99553 * 3 2 1 31 31 H 1.09002 * 109.47280 * 244.99545 * 3 2 1 32 32 H 1.09002 * 109.47120 * 149.71100 * 6 5 4 33 33 H 1.08998 * 109.46862 * 29.71902 * 6 5 4 34 34 H 1.09002 * 109.47153 * 59.99773 * 7 6 5 35 35 H 1.09001 * 109.46832 * 299.99964 * 7 6 5 36 36 H 1.09001 * 109.47194 * 299.99650 * 8 7 6 37 37 H 1.08992 * 109.47399 * 59.99823 * 8 7 6 38 38 H 0.97000 * 120.00354 * 180.02562 * 12 11 9 39 39 H 1.09000 * 109.33681 * 294.56126 * 21 20 19 40 40 H 1.09004 * 109.33611 * 54.22776 * 21 20 19 41 41 H 1.08005 * 118.35653 * 162.94694 * 22 21 20 42 42 H 1.09002 * 109.47235 * 0.02562 * 24 23 22 43 43 H 1.09002 * 109.47271 * 119.99626 * 24 23 22 44 44 H 1.08995 * 109.47211 * 239.99785 * 24 23 22 45 45 H 1.08999 * 109.42896 * 103.60052 * 25 23 22 46 46 H 1.09004 * 109.42926 * 223.49862 * 25 23 22 47 47 H 1.08998 * 109.63902 * 287.50427 * 26 20 19 48 48 H 1.08994 * 109.63696 * 48.12130 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 4.2913 0.9010 1.1437 6 6 5.0446 0.3023 -0.0160 7 6 4.8647 -1.2170 -0.0114 8 6 5.6300 -1.8248 -1.1886 9 6 5.4532 -3.3214 -1.1836 10 1 4.8545 -3.7919 -0.4177 11 6 6.0550 -4.0899 -2.1574 12 7 6.7837 -3.5170 -3.0903 13 14 5.8365 -5.9451 -2.1509 14 1 4.3936 -6.2739 -2.2751 15 1 6.5792 -6.5351 -3.2935 16 1 6.3632 -6.5010 -0.8787 17 7 4.7575 1.1092 2.3425 18 7 3.8482 1.6336 3.0841 19 6 2.7441 1.7899 2.3924 20 7 1.5516 2.3240 2.8539 21 6 0.4414 1.3840 2.6528 22 6 -0.8131 1.9186 3.2810 23 6 -0.8182 2.8703 4.1640 24 6 -2.1400 3.3188 4.7321 25 6 0.4364 3.5440 4.6451 26 6 1.6540 2.6933 4.2756 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1317 0.0895 31 1 2.6214 1.4026 -0.9313 32 1 6.1038 0.5430 0.0756 33 1 4.6586 0.7111 -0.9498 34 1 3.8055 -1.4577 -0.1030 35 1 5.2507 -1.6257 0.9224 36 1 5.2444 -1.4161 -2.1226 37 1 6.6890 -1.5841 -1.0965 38 1 7.2067 -4.0575 -3.7757 39 1 0.2778 1.2418 1.5846 40 1 0.6916 0.4267 3.1101 41 1 -1.7587 1.4897 2.9837 42 1 -2.9446 2.7354 4.2844 43 1 -2.1408 3.1695 5.8118 44 1 -2.2905 4.3755 4.5113 45 1 0.5238 4.5244 4.1768 46 1 0.3923 3.6620 5.7278 47 1 1.6697 1.7918 4.8881 48 1 2.5657 3.2675 4.4401 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121592898.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:59 Heat of formation + Delta-G solvation = 113.780790 kcal Electronic energy + Delta-G solvation = -26657.349336 eV Core-core repulsion = 23135.374934 eV Total energy + Delta-G solvation = -3521.974402 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.89796 -39.50223 -36.54664 -35.39786 -34.51396 -32.94112 -32.33176 -31.21890 -30.07646 -28.35610 -26.85226 -26.70549 -24.33630 -23.54507 -23.45355 -21.07389 -20.98478 -20.62133 -19.60874 -18.14103 -17.49322 -16.42938 -16.29246 -16.06773 -15.70453 -15.18877 -14.80849 -14.56198 -14.37541 -14.04930 -13.94454 -13.88190 -13.68067 -13.50300 -12.93533 -12.57820 -12.42347 -12.25275 -12.20085 -11.97506 -11.80457 -11.58373 -11.35883 -11.27820 -10.94862 -10.85695 -10.81985 -10.58808 -10.38851 -10.07156 -9.84512 -9.77081 -9.71807 -9.39531 -9.15402 -9.06511 -8.36887 -8.11632 -6.02217 -4.04582 1.62335 1.85036 1.93831 2.47617 3.02440 3.31713 3.36457 3.39059 3.56825 4.30375 4.38603 4.43226 4.46084 4.51703 4.63169 4.81041 4.86770 4.96599 4.98616 5.10260 5.14219 5.17370 5.23246 5.24966 5.33457 5.34063 5.41816 5.49809 5.54884 5.58836 5.65320 5.77094 5.85596 5.87657 6.00319 6.07170 6.21010 6.26079 6.32832 6.47834 6.62188 6.64630 6.67434 6.76173 7.03106 7.22198 7.63137 7.76839 7.96910 8.39237 8.97795 9.01652 9.59526 11.08977 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.020905 B = 0.002828 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.101592 B = 9897.943962 C =10534.771699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.177 4.177 3 C 0.134 3.866 4 N -0.476 5.476 5 C 0.203 3.797 6 C -0.035 4.035 7 C -0.102 4.102 8 C 0.023 3.977 9 C -0.521 4.521 10 H 0.053 0.947 11 C 0.058 3.942 12 N -0.895 5.895 13 Si 0.891 3.109 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.276 1.276 17 N -0.288 5.288 18 N -0.323 5.323 19 C 0.345 3.655 20 N -0.444 5.444 21 C 0.064 3.936 22 C -0.163 4.163 23 C -0.116 4.116 24 C -0.119 4.119 25 C -0.081 4.081 26 C 0.069 3.931 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.128 0.872 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.017 0.983 37 H 0.020 0.980 38 H 0.261 0.739 39 H 0.108 0.892 40 H 0.055 0.945 41 H 0.117 0.883 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.054 0.946 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.936 15.135 10.673 26.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.196 4.196 3 C 0.011 3.989 4 N -0.171 5.171 5 C -0.065 4.065 6 C -0.075 4.075 7 C -0.141 4.141 8 C -0.014 4.014 9 C -0.559 4.559 10 H 0.071 0.929 11 C -0.143 4.143 12 N -0.534 5.534 13 Si 0.719 3.281 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 N -0.126 5.126 18 N -0.167 5.167 19 C -0.012 4.012 20 N -0.168 5.168 21 C -0.062 4.062 22 C -0.182 4.182 23 C -0.116 4.116 24 C -0.176 4.176 25 C -0.118 4.118 26 C -0.058 4.058 27 H 0.128 0.872 28 H 0.121 0.879 29 H 0.146 0.854 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.035 0.965 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.125 0.875 40 H 0.073 0.927 41 H 0.135 0.865 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.072 0.928 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.974 15.593 11.425 26.396 hybrid contribution -0.968 -1.753 -0.854 2.177 sum -18.943 13.840 10.571 25.732 Atomic orbital electron populations 1.23956 0.95522 1.02577 0.98683 1.23362 0.96452 0.98811 1.00977 1.21026 0.92118 0.97160 0.88551 1.46190 1.12102 1.48854 1.09960 1.25254 0.82056 1.00696 0.98481 1.20347 0.99323 0.97565 0.90248 1.21674 1.00518 0.89927 1.01933 1.19093 0.95415 0.95195 0.91688 1.21169 1.31009 0.92147 1.11592 0.92851 1.25001 0.95216 0.98550 0.95562 1.69942 1.32866 1.35580 1.14997 0.86678 0.78166 0.85714 0.77571 1.20324 1.21253 1.20201 1.74002 1.22856 1.15591 1.00198 1.74551 0.97739 1.19877 1.24580 1.22536 0.94755 1.00360 0.83520 1.59108 0.99186 1.37783 1.20687 1.21674 0.88061 0.93091 1.03385 1.21980 0.97596 0.99497 0.99102 1.21030 0.96078 0.97155 0.97347 1.20915 0.94019 1.01642 1.00993 1.20552 0.90970 0.99177 1.01129 1.22150 0.99605 0.99892 0.84183 0.87202 0.87919 0.85421 0.88219 0.87178 0.88461 0.90482 0.93592 0.92507 0.96504 0.96158 0.92912 0.87469 0.92685 0.86527 0.92035 0.91574 0.91520 0.89819 0.89850 0.92786 0.88523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 12.27 29.01 0.36 -1.05 16 2 C -0.18 -1.90 9.08 -36.03 -0.33 -2.23 16 3 C 0.13 1.47 5.64 -5.19 -0.03 1.44 16 4 N -0.48 -6.91 2.79 -115.37 -0.32 -7.24 16 5 C 0.20 3.47 7.32 -154.02 -1.13 2.34 16 6 C -0.04 -0.59 5.59 -27.89 -0.16 -0.75 16 7 C -0.10 -2.04 5.13 -26.73 -0.14 -2.18 16 8 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 9 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 10 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 12 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 13 Si 0.89 21.52 29.54 -169.99 -5.02 16.49 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 N -0.29 -5.60 12.18 32.99 0.40 -5.20 16 18 N -0.32 -5.86 11.11 30.31 0.34 -5.53 16 19 C 0.34 5.26 7.17 -318.87 -2.29 2.97 16 20 N -0.44 -5.42 4.77 -175.93 -0.84 -6.25 16 21 C 0.06 0.67 5.05 -5.27 -0.03 0.64 16 22 C -0.16 -1.39 9.53 -35.97 -0.34 -1.73 16 23 C -0.12 -0.92 5.89 -100.93 -0.59 -1.51 16 24 C -0.12 -0.69 10.02 36.00 0.36 -0.33 16 25 C -0.08 -0.65 6.05 -28.04 -0.17 -0.82 16 26 C 0.07 0.75 5.10 -3.60 -0.02 0.73 16 27 H 0.11 0.83 8.06 -52.49 -0.42 0.41 16 28 H 0.10 0.67 7.10 -52.48 -0.37 0.30 16 29 H 0.13 1.66 6.65 -52.49 -0.35 1.31 16 30 H 0.10 0.92 7.20 -51.93 -0.37 0.55 16 31 H 0.11 1.11 7.25 -51.93 -0.38 0.74 16 32 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 33 H 0.08 1.14 7.26 -51.93 -0.38 0.77 16 34 H 0.05 0.88 6.73 -51.93 -0.35 0.53 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.11 1.01 1.96 -51.93 -0.10 0.91 16 40 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 41 H 0.12 0.80 7.63 -52.48 -0.40 0.40 16 42 H 0.06 0.32 7.62 -51.93 -0.40 -0.08 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 48 H 0.10 1.13 7.67 -51.93 -0.40 0.74 16 LS Contribution 380.88 15.07 5.74 5.74 Total: -1.00 -32.77 380.88 -11.70 -44.47 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -7.68 Total: -1.46 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -5.05 Total: -15.30 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.31 Total: -49.95 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.77 -11.70 -44.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121592898.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.252 kcal (2) G-P(sol) polarization free energy of solvation -32.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds