Wall clock time and date at job start Tue Mar 31 2020 11:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00036 * 2 1 4 4 N 1.46500 * 109.47427 * 124.99461 * 3 2 1 5 5 C 1.36738 * 127.13416 * 90.02129 * 4 3 2 6 6 C 1.50697 * 126.34894 * 0.02562 * 5 4 3 7 7 C 1.52997 * 109.47466 * 269.71347 * 6 5 4 8 8 C 1.53000 * 109.47060 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.46912 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99776 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00001 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00114 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99955 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46725 * 60.00489 * 13 11 9 15 15 H 1.48505 * 109.46988 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47116 * 300.00464 * 13 11 9 17 17 N 1.30297 * 107.30223 * 179.75880 * 5 4 3 18 18 N 1.28519 * 110.05683 * 0.24391 * 17 5 4 19 19 C 1.31224 * 109.86001 * 359.97438 * 18 17 5 20 20 N 1.38579 * 126.47141 * 180.02562 * 19 18 17 21 21 C 1.46850 * 110.99615 * 236.07024 * 20 19 18 22 22 C 1.50138 * 110.27349 * 174.31470 * 21 20 19 23 23 C 1.29825 * 123.28814 * 342.92578 * 22 21 20 24 24 C 1.50695 * 118.55524 * 180.39537 * 23 22 21 25 25 C 1.50311 * 122.88856 * 0.37188 * 23 22 21 26 26 C 1.47242 * 111.00081 * 358.99597 * 20 19 18 27 27 H 1.08000 * 120.00401 * 180.02562 * 1 2 3 28 28 H 1.08003 * 119.99962 * 0.02562 * 1 2 3 29 29 H 1.07994 * 120.00084 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47603 * 4.99553 * 3 2 1 31 31 H 1.09002 * 109.47280 * 244.99545 * 3 2 1 32 32 H 1.09002 * 109.47120 * 149.71100 * 6 5 4 33 33 H 1.08998 * 109.46862 * 29.71902 * 6 5 4 34 34 H 1.09002 * 109.47153 * 59.99773 * 7 6 5 35 35 H 1.09001 * 109.46832 * 299.99964 * 7 6 5 36 36 H 1.09001 * 109.47194 * 299.99650 * 8 7 6 37 37 H 1.08992 * 109.47399 * 59.99823 * 8 7 6 38 38 H 0.97000 * 120.00354 * 180.02562 * 12 11 9 39 39 H 1.09000 * 109.33681 * 294.56126 * 21 20 19 40 40 H 1.09004 * 109.33611 * 54.22776 * 21 20 19 41 41 H 1.08005 * 118.35653 * 162.94694 * 22 21 20 42 42 H 1.09002 * 109.47235 * 0.02562 * 24 23 22 43 43 H 1.09002 * 109.47271 * 119.99626 * 24 23 22 44 44 H 1.08995 * 109.47211 * 239.99785 * 24 23 22 45 45 H 1.08999 * 109.42896 * 103.60052 * 25 23 22 46 46 H 1.09004 * 109.42926 * 223.49862 * 25 23 22 47 47 H 1.08998 * 109.63902 * 287.50427 * 26 20 19 48 48 H 1.08994 * 109.63696 * 48.12130 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 4.2913 0.9010 1.1437 6 6 5.0446 0.3023 -0.0160 7 6 4.8647 -1.2170 -0.0114 8 6 5.6300 -1.8248 -1.1886 9 6 5.4532 -3.3214 -1.1836 10 1 4.8545 -3.7919 -0.4177 11 6 6.0550 -4.0899 -2.1574 12 7 6.7837 -3.5170 -3.0903 13 14 5.8365 -5.9451 -2.1509 14 1 4.3936 -6.2739 -2.2751 15 1 6.5792 -6.5351 -3.2935 16 1 6.3632 -6.5010 -0.8787 17 7 4.7575 1.1092 2.3425 18 7 3.8482 1.6336 3.0841 19 6 2.7441 1.7899 2.3924 20 7 1.5516 2.3240 2.8539 21 6 0.4414 1.3840 2.6528 22 6 -0.8131 1.9186 3.2810 23 6 -0.8182 2.8703 4.1640 24 6 -2.1400 3.3188 4.7321 25 6 0.4364 3.5440 4.6451 26 6 1.6540 2.6933 4.2756 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1317 0.0895 31 1 2.6214 1.4026 -0.9313 32 1 6.1038 0.5430 0.0756 33 1 4.6586 0.7111 -0.9498 34 1 3.8055 -1.4577 -0.1030 35 1 5.2507 -1.6257 0.9224 36 1 5.2444 -1.4161 -2.1226 37 1 6.6890 -1.5841 -1.0965 38 1 7.2067 -4.0575 -3.7757 39 1 0.2778 1.2418 1.5846 40 1 0.6916 0.4267 3.1101 41 1 -1.7587 1.4897 2.9837 42 1 -2.9446 2.7354 4.2844 43 1 -2.1408 3.1695 5.8118 44 1 -2.2905 4.3755 4.5113 45 1 0.5238 4.5244 4.1768 46 1 0.3923 3.6620 5.7278 47 1 1.6697 1.7918 4.8881 48 1 2.5657 3.2675 4.4401 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121592898.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:58 Heat of formation + Delta-G solvation = 97.970485 kcal Electronic energy + Delta-G solvation = -26658.034922 eV Core-core repulsion = 23135.374934 eV Total energy + Delta-G solvation = -3522.659988 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.13274 -40.34737 -37.55131 -36.69059 -35.75571 -34.41141 -33.78309 -31.97737 -31.46440 -29.47985 -28.11467 -27.76001 -25.72875 -24.74528 -24.33082 -22.45100 -22.12317 -21.94980 -20.74170 -18.97406 -18.55855 -18.33425 -17.42691 -17.16562 -16.57736 -16.53465 -16.15658 -15.78270 -15.49042 -15.17828 -14.95507 -14.66465 -14.63930 -14.33827 -14.14712 -13.86394 -13.70164 -13.42791 -13.25580 -12.91594 -12.81137 -12.72422 -12.69141 -12.57915 -12.50262 -12.42364 -12.10868 -11.70336 -11.57187 -11.52447 -11.46404 -11.28183 -11.17834 -10.80830 -10.53835 -10.51354 -9.73981 -9.31939 -8.19380 -6.29520 0.61395 0.88154 1.23663 1.39386 1.41978 1.47923 1.49777 1.71980 2.40918 2.56361 3.13962 3.34041 3.52479 3.62114 3.69880 3.72367 3.89433 3.98917 4.09504 4.15514 4.22640 4.25175 4.31638 4.35892 4.47243 4.48894 4.55909 4.66257 4.74968 4.79278 4.81376 4.89497 4.90522 4.96694 5.02797 5.06618 5.07718 5.15691 5.19984 5.35916 5.47281 5.51088 5.56277 5.61177 5.68897 5.74492 5.85799 5.99324 6.12514 6.25715 6.85797 7.38988 7.68323 8.91830 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.020905 B = 0.002828 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.101592 B = 9897.943962 C =10534.771699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.207 4.207 3 C 0.130 3.870 4 N -0.470 5.470 5 C 0.196 3.804 6 C -0.023 4.023 7 C -0.083 4.083 8 C 0.029 3.971 9 C -0.543 4.543 10 H 0.053 0.947 11 C 0.004 3.996 12 N -0.929 5.929 13 Si 0.958 3.042 14 H -0.266 1.266 15 H -0.281 1.281 16 H -0.272 1.272 17 N -0.326 5.326 18 N -0.359 5.359 19 C 0.355 3.645 20 N -0.439 5.439 21 C 0.066 3.934 22 C -0.176 4.176 23 C -0.114 4.114 24 C -0.116 4.116 25 C -0.076 4.076 26 C 0.066 3.934 27 H 0.119 0.881 28 H 0.129 0.871 29 H 0.099 0.901 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.054 0.946 35 H 0.038 0.962 36 H 0.006 0.994 37 H -0.004 1.004 38 H 0.264 0.736 39 H 0.118 0.882 40 H 0.034 0.966 41 H 0.138 0.862 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.103 0.897 47 H 0.041 0.959 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.184 15.643 10.820 29.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.226 4.226 3 C 0.009 3.991 4 N -0.165 5.165 5 C -0.073 4.073 6 C -0.063 4.063 7 C -0.122 4.122 8 C -0.008 4.008 9 C -0.581 4.581 10 H 0.072 0.928 11 C -0.194 4.194 12 N -0.569 5.569 13 Si 0.783 3.217 14 H -0.191 1.191 15 H -0.207 1.207 16 H -0.197 1.197 17 N -0.164 5.164 18 N -0.203 5.203 19 C -0.002 4.002 20 N -0.163 5.163 21 C -0.059 4.059 22 C -0.194 4.194 23 C -0.114 4.114 24 C -0.173 4.173 25 C -0.114 4.114 26 C -0.061 4.061 27 H 0.137 0.863 28 H 0.147 0.853 29 H 0.117 0.883 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.024 0.976 37 H 0.014 0.986 38 H 0.073 0.927 39 H 0.135 0.865 40 H 0.052 0.948 41 H 0.156 0.844 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.108 0.892 46 H 0.121 0.879 47 H 0.060 0.940 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -21.250 16.107 11.574 29.068 hybrid contribution -0.043 -1.857 -0.867 2.050 sum -21.292 14.250 10.707 27.768 Atomic orbital electron populations 1.24226 0.94551 1.04257 0.94651 1.23127 0.97274 0.97483 1.04719 1.21337 0.92053 0.98175 0.87516 1.46341 1.11652 1.47868 1.10617 1.25049 0.83233 1.01212 0.97802 1.20135 0.99444 0.95214 0.91485 1.21360 1.00002 0.92008 0.98801 1.18966 0.94457 0.94386 0.93028 1.21597 1.31056 0.93807 1.11669 0.92839 1.25878 0.94811 1.03581 0.95135 1.70061 1.33690 1.37444 1.15673 0.85605 0.78690 0.79679 0.77713 1.19058 1.20653 1.19746 1.73899 1.24338 1.16811 1.01328 1.74449 0.98776 1.21612 1.25458 1.22892 0.95106 0.98669 0.83570 1.59300 0.98287 1.37491 1.21232 1.21732 0.88146 0.91911 1.04156 1.22058 0.97215 1.00327 0.99818 1.21268 0.96907 0.96605 0.96660 1.20929 0.92740 1.02247 1.01379 1.20575 0.89642 0.98680 1.02464 1.22216 1.00782 0.99697 0.83358 0.86267 0.85321 0.88258 0.85934 0.86434 0.88894 0.88170 0.92746 0.94332 0.97561 0.98602 0.92716 0.86479 0.94758 0.84389 0.91180 0.90801 0.90639 0.89182 0.87912 0.94024 0.89859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 12.27 67.78 0.83 -1.09 16 2 C -0.21 -4.19 9.08 25.65 0.23 -3.96 16 3 C 0.13 2.66 5.64 85.63 0.48 3.14 16 4 N -0.47 -13.57 2.79 -518.91 -1.45 -15.02 16 5 C 0.20 6.85 7.32 137.64 1.01 7.86 16 6 C -0.02 -0.80 5.59 29.85 0.17 -0.63 16 7 C -0.08 -3.43 5.13 30.59 0.16 -3.27 16 8 C 0.03 1.48 4.97 29.85 0.15 1.63 16 9 C -0.54 -30.78 9.11 25.60 0.23 -30.55 16 10 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 11 C 0.00 0.24 5.46 84.66 0.46 0.70 16 12 N -0.93 -55.72 13.29 21.45 0.28 -55.43 16 13 Si 0.96 44.18 29.54 68.60 2.03 46.21 16 14 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 16 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 17 N -0.33 -13.13 12.18 -49.54 -0.60 -13.73 16 18 N -0.36 -13.45 11.11 -58.00 -0.64 -14.09 16 19 C 0.36 10.87 7.17 260.11 1.87 12.74 16 20 N -0.44 -10.33 4.77 -710.52 -3.39 -13.72 16 21 C 0.07 1.27 5.05 85.39 0.43 1.70 16 22 C -0.18 -2.50 9.53 26.68 0.25 -2.25 16 23 C -0.11 -1.48 5.89 -15.40 -0.09 -1.57 16 24 C -0.12 -0.93 10.02 71.23 0.71 -0.22 16 25 C -0.08 -1.07 6.05 29.75 0.18 -0.89 16 26 C 0.07 1.42 5.10 86.26 0.44 1.86 16 27 H 0.12 1.46 8.06 -2.91 -0.02 1.43 16 28 H 0.13 1.13 7.10 -2.91 -0.02 1.11 16 29 H 0.10 2.60 6.65 -2.91 -0.02 2.58 16 30 H 0.12 1.92 7.20 -2.39 -0.02 1.91 16 31 H 0.12 2.21 7.25 -2.39 -0.02 2.19 16 32 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.10 2.95 7.26 -2.39 -0.02 2.93 16 34 H 0.05 2.14 6.73 -2.39 -0.02 2.13 16 35 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 38 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 39 H 0.12 1.92 1.96 -2.39 0.00 1.92 16 40 H 0.03 0.81 8.10 -2.39 -0.02 0.79 16 41 H 0.14 1.38 7.63 -2.91 -0.02 1.35 16 42 H 0.07 0.46 7.62 -2.39 -0.02 0.45 16 43 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.07 0.50 8.14 -2.39 -0.02 0.49 16 45 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.04 0.98 8.08 -2.39 -0.02 0.97 16 48 H 0.08 2.00 7.67 -2.39 -0.02 1.98 16 Total: -1.00 -72.78 380.88 4.69 -68.09 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.94 Total: 12.49 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 7.52 Total: -14.79 kcal Atomic # 7 Polarization: -106.20 SS G_CDS: -5.80 Total: -112.00 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -72.78 4.69 -68.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121592898.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.060 kcal (2) G-P(sol) polarization free energy of solvation -72.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds