Wall clock time and date at job start Tue Mar 31 2020 11:14:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31000 * 1
3 3 C 1.50697 * 120.00036 * 2 1
4 4 N 1.46500 * 109.47427 * 124.99461 * 3 2 1
5 5 C 1.36738 * 127.13416 * 90.02129 * 4 3 2
6 6 C 1.50697 * 126.34894 * 0.02562 * 5 4 3
7 7 C 1.52997 * 109.47466 * 269.71347 * 6 5 4
8 8 C 1.53000 * 109.47060 * 180.02562 * 7 6 5
9 9 C 1.50703 * 109.46912 * 179.97438 * 8 7 6
10 10 H 1.08001 * 119.99776 * 0.02562 * 9 8 7
11 11 C 1.37877 * 120.00001 * 179.97438 * 9 8 7
12 12 N 1.31511 * 120.00114 * 0.02562 * 11 9 8
13 13 Si 1.86803 * 119.99955 * 179.97438 * 11 9 8
14 14 H 1.48506 * 109.46725 * 60.00489 * 13 11 9
15 15 H 1.48505 * 109.46988 * 180.02562 * 13 11 9
16 16 H 1.48494 * 109.47116 * 300.00464 * 13 11 9
17 17 N 1.30297 * 107.30223 * 179.75880 * 5 4 3
18 18 N 1.28519 * 110.05683 * 0.24391 * 17 5 4
19 19 C 1.31224 * 109.86001 * 359.97438 * 18 17 5
20 20 N 1.38579 * 126.47141 * 180.02562 * 19 18 17
21 21 C 1.46850 * 110.99615 * 236.07024 * 20 19 18
22 22 C 1.50138 * 110.27349 * 174.31470 * 21 20 19
23 23 C 1.29825 * 123.28814 * 342.92578 * 22 21 20
24 24 C 1.50695 * 118.55524 * 180.39537 * 23 22 21
25 25 C 1.50311 * 122.88856 * 0.37188 * 23 22 21
26 26 C 1.47242 * 111.00081 * 358.99597 * 20 19 18
27 27 H 1.08000 * 120.00401 * 180.02562 * 1 2 3
28 28 H 1.08003 * 119.99962 * 0.02562 * 1 2 3
29 29 H 1.07994 * 120.00084 * 179.97438 * 2 1 3
30 30 H 1.09003 * 109.47603 * 4.99553 * 3 2 1
31 31 H 1.09002 * 109.47280 * 244.99545 * 3 2 1
32 32 H 1.09002 * 109.47120 * 149.71100 * 6 5 4
33 33 H 1.08998 * 109.46862 * 29.71902 * 6 5 4
34 34 H 1.09002 * 109.47153 * 59.99773 * 7 6 5
35 35 H 1.09001 * 109.46832 * 299.99964 * 7 6 5
36 36 H 1.09001 * 109.47194 * 299.99650 * 8 7 6
37 37 H 1.08992 * 109.47399 * 59.99823 * 8 7 6
38 38 H 0.97000 * 120.00354 * 180.02562 * 12 11 9
39 39 H 1.09000 * 109.33681 * 294.56126 * 21 20 19
40 40 H 1.09004 * 109.33611 * 54.22776 * 21 20 19
41 41 H 1.08005 * 118.35653 * 162.94694 * 22 21 20
42 42 H 1.09002 * 109.47235 * 0.02562 * 24 23 22
43 43 H 1.09002 * 109.47271 * 119.99626 * 24 23 22
44 44 H 1.08995 * 109.47211 * 239.99785 * 24 23 22
45 45 H 1.08999 * 109.42896 * 103.60052 * 25 23 22
46 46 H 1.09004 * 109.42926 * 223.49862 * 25 23 22
47 47 H 1.08998 * 109.63902 * 287.50427 * 26 20 19
48 48 H 1.08994 * 109.63696 * 48.12130 * 26 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 7 2.9937 1.3320 1.1315
5 6 4.2913 0.9010 1.1437
6 6 5.0446 0.3023 -0.0160
7 6 4.8647 -1.2170 -0.0114
8 6 5.6300 -1.8248 -1.1886
9 6 5.4532 -3.3214 -1.1836
10 1 4.8545 -3.7919 -0.4177
11 6 6.0550 -4.0899 -2.1574
12 7 6.7837 -3.5170 -3.0903
13 14 5.8365 -5.9451 -2.1509
14 1 4.3936 -6.2739 -2.2751
15 1 6.5792 -6.5351 -3.2935
16 1 6.3632 -6.5010 -0.8787
17 7 4.7575 1.1092 2.3425
18 7 3.8482 1.6336 3.0841
19 6 2.7441 1.7899 2.3924
20 7 1.5516 2.3240 2.8539
21 6 0.4414 1.3840 2.6528
22 6 -0.8131 1.9186 3.2810
23 6 -0.8182 2.8703 4.1640
24 6 -2.1400 3.3188 4.7321
25 6 0.4364 3.5440 4.6451
26 6 1.6540 2.6933 4.2756
27 1 -0.5401 -0.9353 0.0004
28 1 -0.5400 0.9353 -0.0004
29 1 1.8500 -0.9353 0.0004
30 1 1.3586 2.1317 0.0895
31 1 2.6214 1.4026 -0.9313
32 1 6.1038 0.5430 0.0756
33 1 4.6586 0.7111 -0.9498
34 1 3.8055 -1.4577 -0.1030
35 1 5.2507 -1.6257 0.9224
36 1 5.2444 -1.4161 -2.1226
37 1 6.6890 -1.5841 -1.0965
38 1 7.2067 -4.0575 -3.7757
39 1 0.2778 1.2418 1.5846
40 1 0.6916 0.4267 3.1101
41 1 -1.7587 1.4897 2.9837
42 1 -2.9446 2.7354 4.2844
43 1 -2.1408 3.1695 5.8118
44 1 -2.2905 4.3755 4.5113
45 1 0.5238 4.5244 4.1768
46 1 0.3923 3.6620 5.7278
47 1 1.6697 1.7918 4.8881
48 1 2.5657 3.2675 4.4401
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001121592898.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:14:58
Heat of formation + Delta-G solvation = 97.970485 kcal
Electronic energy + Delta-G solvation = -26658.034922 eV
Core-core repulsion = 23135.374934 eV
Total energy + Delta-G solvation = -3522.659988 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 316.196 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-44.13274 -40.34737 -37.55131 -36.69059 -35.75571 -34.41141 -33.78309 -31.97737
-31.46440 -29.47985 -28.11467 -27.76001 -25.72875 -24.74528 -24.33082 -22.45100
-22.12317 -21.94980 -20.74170 -18.97406 -18.55855 -18.33425 -17.42691 -17.16562
-16.57736 -16.53465 -16.15658 -15.78270 -15.49042 -15.17828 -14.95507 -14.66465
-14.63930 -14.33827 -14.14712 -13.86394 -13.70164 -13.42791 -13.25580 -12.91594
-12.81137 -12.72422 -12.69141 -12.57915 -12.50262 -12.42364 -12.10868 -11.70336
-11.57187 -11.52447 -11.46404 -11.28183 -11.17834 -10.80830 -10.53835 -10.51354
-9.73981 -9.31939 -8.19380 -6.29520 0.61395 0.88154 1.23663 1.39386
1.41978 1.47923 1.49777 1.71980 2.40918 2.56361 3.13962 3.34041
3.52479 3.62114 3.69880 3.72367 3.89433 3.98917 4.09504 4.15514
4.22640 4.25175 4.31638 4.35892 4.47243 4.48894 4.55909 4.66257
4.74968 4.79278 4.81376 4.89497 4.90522 4.96694 5.02797 5.06618
5.07718 5.15691 5.19984 5.35916 5.47281 5.51088 5.56277 5.61177
5.68897 5.74492 5.85799 5.99324 6.12514 6.25715 6.85797 7.38988
7.68323 8.91830
Molecular weight = 316.20amu
Principal moments of inertia in cm(-1)
A = 0.020905 B = 0.002828 C = 0.002657
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1339.101592 B = 9897.943962 C =10534.771699
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.207 4.207
3 C 0.130 3.870
4 N -0.470 5.470
5 C 0.196 3.804
6 C -0.023 4.023
7 C -0.083 4.083
8 C 0.029 3.971
9 C -0.543 4.543
10 H 0.053 0.947
11 C 0.004 3.996
12 N -0.929 5.929
13 Si 0.958 3.042
14 H -0.266 1.266
15 H -0.281 1.281
16 H -0.272 1.272
17 N -0.326 5.326
18 N -0.359 5.359
19 C 0.355 3.645
20 N -0.439 5.439
21 C 0.066 3.934
22 C -0.176 4.176
23 C -0.114 4.114
24 C -0.116 4.116
25 C -0.076 4.076
26 C 0.066 3.934
27 H 0.119 0.881
28 H 0.129 0.871
29 H 0.099 0.901
30 H 0.123 0.877
31 H 0.118 0.882
32 H 0.093 0.907
33 H 0.100 0.900
34 H 0.054 0.946
35 H 0.038 0.962
36 H 0.006 0.994
37 H -0.004 1.004
38 H 0.264 0.736
39 H 0.118 0.882
40 H 0.034 0.966
41 H 0.138 0.862
42 H 0.069 0.931
43 H 0.073 0.927
44 H 0.075 0.925
45 H 0.090 0.910
46 H 0.103 0.897
47 H 0.041 0.959
48 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.184 15.643 10.820 29.221
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C -0.226 4.226
3 C 0.009 3.991
4 N -0.165 5.165
5 C -0.073 4.073
6 C -0.063 4.063
7 C -0.122 4.122
8 C -0.008 4.008
9 C -0.581 4.581
10 H 0.072 0.928
11 C -0.194 4.194
12 N -0.569 5.569
13 Si 0.783 3.217
14 H -0.191 1.191
15 H -0.207 1.207
16 H -0.197 1.197
17 N -0.164 5.164
18 N -0.203 5.203
19 C -0.002 4.002
20 N -0.163 5.163
21 C -0.059 4.059
22 C -0.194 4.194
23 C -0.114 4.114
24 C -0.173 4.173
25 C -0.114 4.114
26 C -0.061 4.061
27 H 0.137 0.863
28 H 0.147 0.853
29 H 0.117 0.883
30 H 0.141 0.859
31 H 0.136 0.864
32 H 0.111 0.889
33 H 0.118 0.882
34 H 0.073 0.927
35 H 0.057 0.943
36 H 0.024 0.976
37 H 0.014 0.986
38 H 0.073 0.927
39 H 0.135 0.865
40 H 0.052 0.948
41 H 0.156 0.844
42 H 0.088 0.912
43 H 0.092 0.908
44 H 0.094 0.906
45 H 0.108 0.892
46 H 0.121 0.879
47 H 0.060 0.940
48 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -21.250 16.107 11.574 29.068
hybrid contribution -0.043 -1.857 -0.867 2.050
sum -21.292 14.250 10.707 27.768
Atomic orbital electron populations
1.24226 0.94551 1.04257 0.94651 1.23127 0.97274 0.97483 1.04719
1.21337 0.92053 0.98175 0.87516 1.46341 1.11652 1.47868 1.10617
1.25049 0.83233 1.01212 0.97802 1.20135 0.99444 0.95214 0.91485
1.21360 1.00002 0.92008 0.98801 1.18966 0.94457 0.94386 0.93028
1.21597 1.31056 0.93807 1.11669 0.92839 1.25878 0.94811 1.03581
0.95135 1.70061 1.33690 1.37444 1.15673 0.85605 0.78690 0.79679
0.77713 1.19058 1.20653 1.19746 1.73899 1.24338 1.16811 1.01328
1.74449 0.98776 1.21612 1.25458 1.22892 0.95106 0.98669 0.83570
1.59300 0.98287 1.37491 1.21232 1.21732 0.88146 0.91911 1.04156
1.22058 0.97215 1.00327 0.99818 1.21268 0.96907 0.96605 0.96660
1.20929 0.92740 1.02247 1.01379 1.20575 0.89642 0.98680 1.02464
1.22216 1.00782 0.99697 0.83358 0.86267 0.85321 0.88258 0.85934
0.86434 0.88894 0.88170 0.92746 0.94332 0.97561 0.98602 0.92716
0.86479 0.94758 0.84389 0.91180 0.90801 0.90639 0.89182 0.87912
0.94024 0.89859
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.92 12.27 67.78 0.83 -1.09 16
2 C -0.21 -4.19 9.08 25.65 0.23 -3.96 16
3 C 0.13 2.66 5.64 85.63 0.48 3.14 16
4 N -0.47 -13.57 2.79 -518.91 -1.45 -15.02 16
5 C 0.20 6.85 7.32 137.64 1.01 7.86 16
6 C -0.02 -0.80 5.59 29.85 0.17 -0.63 16
7 C -0.08 -3.43 5.13 30.59 0.16 -3.27 16
8 C 0.03 1.48 4.97 29.85 0.15 1.63 16
9 C -0.54 -30.78 9.11 25.60 0.23 -30.55 16
10 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16
11 C 0.00 0.24 5.46 84.66 0.46 0.70 16
12 N -0.93 -55.72 13.29 21.45 0.28 -55.43 16
13 Si 0.96 44.18 29.54 68.60 2.03 46.21 16
14 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16
15 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16
16 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16
17 N -0.33 -13.13 12.18 -49.54 -0.60 -13.73 16
18 N -0.36 -13.45 11.11 -58.00 -0.64 -14.09 16
19 C 0.36 10.87 7.17 260.11 1.87 12.74 16
20 N -0.44 -10.33 4.77 -710.52 -3.39 -13.72 16
21 C 0.07 1.27 5.05 85.39 0.43 1.70 16
22 C -0.18 -2.50 9.53 26.68 0.25 -2.25 16
23 C -0.11 -1.48 5.89 -15.40 -0.09 -1.57 16
24 C -0.12 -0.93 10.02 71.23 0.71 -0.22 16
25 C -0.08 -1.07 6.05 29.75 0.18 -0.89 16
26 C 0.07 1.42 5.10 86.26 0.44 1.86 16
27 H 0.12 1.46 8.06 -2.91 -0.02 1.43 16
28 H 0.13 1.13 7.10 -2.91 -0.02 1.11 16
29 H 0.10 2.60 6.65 -2.91 -0.02 2.58 16
30 H 0.12 1.92 7.20 -2.39 -0.02 1.91 16
31 H 0.12 2.21 7.25 -2.39 -0.02 2.19 16
32 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16
33 H 0.10 2.95 7.26 -2.39 -0.02 2.93 16
34 H 0.05 2.14 6.73 -2.39 -0.02 2.13 16
35 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16
36 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16
37 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16
38 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16
39 H 0.12 1.92 1.96 -2.39 0.00 1.92 16
40 H 0.03 0.81 8.10 -2.39 -0.02 0.79 16
41 H 0.14 1.38 7.63 -2.91 -0.02 1.35 16
42 H 0.07 0.46 7.62 -2.39 -0.02 0.45 16
43 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16
44 H 0.07 0.50 8.14 -2.39 -0.02 0.49 16
45 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16
46 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16
47 H 0.04 0.98 8.08 -2.39 -0.02 0.97 16
48 H 0.08 2.00 7.67 -2.39 -0.02 1.98 16
Total: -1.00 -72.78 380.88 4.69 -68.09
By element:
Atomic # 1 Polarization: 11.55 SS G_CDS: 0.94 Total: 12.49 kcal
Atomic # 6 Polarization: -22.31 SS G_CDS: 7.52 Total: -14.79 kcal
Atomic # 7 Polarization: -106.20 SS G_CDS: -5.80 Total: -112.00 kcal
Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal
Total: -72.78 4.69 -68.09 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001121592898.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 166.060 kcal
(2) G-P(sol) polarization free energy of solvation -72.776 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.284 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.687 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.089 kcal
(6) G-S(sol) free energy of system = (1) + (5) 97.970 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds