Wall clock time and date at job start Tue Mar 31 2020 11:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00391 * 2 1 4 4 N 1.46502 * 109.47265 * 124.99180 * 3 2 1 5 5 C 1.36736 * 127.13437 * 84.38865 * 4 3 2 6 6 C 1.50706 * 126.34704 * 359.97438 * 5 4 3 7 7 H 1.09004 * 109.46797 * 359.72115 * 6 5 4 8 8 C 1.53000 * 109.46609 * 119.71671 * 6 5 4 9 9 C 1.53002 * 109.47138 * 239.72086 * 6 5 4 10 10 C 1.50700 * 109.46705 * 175.00356 * 9 6 5 11 11 H 1.08001 * 120.00172 * 359.97438 * 10 9 6 12 12 C 1.37876 * 119.99795 * 179.97438 * 10 9 6 13 13 N 1.31516 * 120.00209 * 0.27098 * 12 10 9 14 14 Si 1.86798 * 120.00202 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47331 * 89.99649 * 14 12 10 16 16 H 1.48499 * 109.47145 * 210.00195 * 14 12 10 17 17 H 1.48502 * 109.47118 * 329.99824 * 14 12 10 18 18 N 1.30291 * 107.30636 * 179.73286 * 5 4 3 19 19 N 1.28525 * 110.05289 * 0.26058 * 18 5 4 20 20 C 1.31218 * 109.86190 * 359.97438 * 19 18 5 21 21 N 1.38583 * 126.47318 * 179.97438 * 20 19 18 22 22 C 1.47242 * 111.00163 * 264.94630 * 21 20 19 23 23 C 1.53085 * 108.46746 * 54.58837 * 22 21 20 24 24 C 1.50299 * 109.72043 * 48.96241 * 23 22 21 25 25 C 1.29831 * 122.89397 * 343.47693 * 24 23 22 26 26 C 1.50700 * 118.35751 * 180.37298 * 25 24 23 27 27 C 1.46843 * 111.00082 * 27.88163 * 21 20 19 28 28 H 1.08004 * 120.00416 * 180.02562 * 1 2 3 29 29 H 1.08000 * 119.99966 * 0.02562 * 1 2 3 30 30 H 1.08004 * 119.99779 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.46745 * 4.99523 * 3 2 1 32 32 H 1.08995 * 109.46835 * 244.99621 * 3 2 1 33 33 H 1.08997 * 109.46822 * 60.00663 * 8 6 5 34 34 H 1.09005 * 109.46505 * 180.02562 * 8 6 5 35 35 H 1.08996 * 109.47501 * 299.99780 * 8 6 5 36 36 H 1.08990 * 109.47175 * 55.00337 * 9 6 5 37 37 H 1.09003 * 109.46798 * 294.99718 * 9 6 5 38 38 H 0.97005 * 119.99602 * 359.72950 * 13 12 10 39 39 H 1.09000 * 109.63477 * 174.28359 * 22 21 20 40 40 H 1.09000 * 109.63698 * 294.68697 * 22 21 20 41 41 H 1.09006 * 109.42698 * 169.03758 * 23 22 21 42 42 H 1.08998 * 109.42933 * 288.88064 * 23 22 21 43 43 H 1.08000 * 118.55742 * 163.50395 * 24 23 22 44 44 H 1.08998 * 109.47453 * 0.02562 * 26 25 24 45 45 H 1.09002 * 109.46636 * 120.00698 * 26 25 24 46 46 H 1.09002 * 109.46760 * 239.99768 * 26 25 24 47 47 H 1.09003 * 109.33257 * 47.78420 * 27 21 20 48 48 H 1.08997 * 109.33560 * 167.28329 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.2549 0.8054 1.1761 6 6 4.9595 0.0791 0.0593 7 1 4.3043 0.0266 -0.8102 8 6 6.2390 0.8319 -0.3110 9 6 5.3150 -1.3371 0.5163 10 6 5.9085 -2.1032 -0.6378 11 1 6.0205 -1.6276 -1.6010 12 6 6.3085 -3.4111 -0.4640 13 7 6.1672 -3.9919 0.7075 14 14 7.0435 -4.3610 -1.8947 15 1 8.5164 -4.1733 -1.9090 16 1 6.7298 -5.8046 -1.7437 17 1 6.4683 -3.8603 -3.1690 18 7 4.7364 1.0525 2.3613 19 7 3.8699 1.6896 3.0650 20 6 2.7803 1.8852 2.3605 21 7 1.6315 2.5349 2.7832 22 6 0.6372 1.5736 3.2885 23 6 1.2951 0.7231 4.3781 24 6 1.9994 1.6151 5.3617 25 6 2.2871 2.8555 5.1082 26 6 3.0033 3.6548 6.1661 27 6 1.9410 3.5337 3.8142 28 1 -0.5401 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6214 1.4024 -0.9313 33 1 6.8942 0.8844 0.5585 34 1 6.7484 0.3069 -1.1191 35 1 5.9857 1.8408 -0.6366 36 1 4.4146 -1.8435 0.8639 37 1 6.0396 -1.2854 1.3290 38 1 5.7852 -3.4988 1.4503 39 1 -0.2129 2.1121 3.7073 40 1 0.2997 0.9333 2.4735 41 1 0.5310 0.1438 4.8966 42 1 2.0165 0.0448 3.9225 43 1 2.2788 1.2062 6.3214 44 1 3.1813 3.0259 7.0384 45 1 3.9565 4.0071 5.7720 46 1 2.3905 4.5094 6.4528 47 1 2.7859 4.1399 3.4873 48 1 1.0746 4.1777 3.9643 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121600907.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:07 Heat of formation + Delta-G solvation = 111.051505 kcal Electronic energy + Delta-G solvation = -27739.622785 eV Core-core repulsion = 24217.530033 eV Total energy + Delta-G solvation = -3522.092752 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.73648 -39.53703 -36.17416 -35.40175 -33.99741 -32.65930 -32.24539 -31.74220 -28.70584 -27.04464 -26.72515 -26.60112 -24.89836 -23.97274 -22.81700 -22.09451 -20.82153 -20.22594 -19.19931 -18.19363 -16.87084 -16.75913 -16.11331 -16.03112 -15.22835 -14.99371 -14.66028 -14.32822 -14.06243 -13.73775 -13.68296 -13.56983 -13.39511 -12.81301 -12.57179 -12.47860 -12.31736 -12.11264 -11.93605 -11.86214 -11.72667 -11.56306 -11.33548 -11.15605 -10.97131 -10.85891 -10.74174 -10.33827 -10.15571 -10.06219 -9.84926 -9.74523 -9.66191 -9.16628 -8.66430 -8.59508 -8.32137 -8.12484 -6.34914 -4.05129 1.82289 2.11883 2.27610 2.65569 3.29114 3.43673 3.46639 3.61886 3.79188 4.53195 4.57105 4.67412 4.69810 4.75269 4.81651 4.94594 4.99295 5.09386 5.28214 5.32935 5.36055 5.37806 5.41435 5.46337 5.52123 5.56846 5.62367 5.70388 5.72826 5.88284 5.96248 5.97100 6.02201 6.03550 6.16210 6.23175 6.42562 6.48259 6.54832 6.60393 6.64055 6.74666 6.83049 6.98110 7.02871 7.33986 7.42962 7.54230 8.16431 8.45740 8.87193 9.21778 9.67330 11.05313 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.016436 B = 0.003852 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.121064 B = 7267.830987 C = 7773.263762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.173 4.173 3 C 0.140 3.860 4 N -0.470 5.470 5 C 0.211 3.789 6 C 0.006 3.994 7 H 0.072 0.928 8 C -0.125 4.125 9 C 0.028 3.972 10 C -0.600 4.600 11 H 0.052 0.948 12 C 0.017 3.983 13 N -0.911 5.911 14 Si 1.070 2.930 15 H -0.287 1.287 16 H -0.285 1.285 17 H -0.289 1.289 18 N -0.289 5.289 19 N -0.301 5.301 20 C 0.325 3.675 21 N -0.451 5.451 22 C 0.055 3.945 23 C -0.121 4.121 24 C -0.141 4.141 25 C -0.144 4.144 26 C -0.109 4.109 27 C 0.109 3.891 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.122 0.878 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.032 0.968 36 H 0.003 0.997 37 H 0.022 0.978 38 H 0.270 0.730 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.105 0.895 44 H 0.058 0.942 45 H 0.066 0.934 46 H 0.059 0.941 47 H 0.087 0.913 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.493 14.995 3.126 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.192 4.192 3 C 0.017 3.983 4 N -0.163 5.163 5 C -0.056 4.056 6 C -0.015 4.015 7 H 0.091 0.909 8 C -0.183 4.183 9 C -0.010 4.010 10 C -0.638 4.638 11 H 0.070 0.930 12 C -0.187 4.187 13 N -0.547 5.547 14 Si 0.898 3.102 15 H -0.214 1.214 16 H -0.211 1.211 17 H -0.215 1.215 18 N -0.128 5.128 19 N -0.145 5.145 20 C -0.031 4.031 21 N -0.173 5.173 22 C -0.072 4.072 23 C -0.159 4.159 24 C -0.159 4.159 25 C -0.145 4.145 26 C -0.167 4.167 27 C -0.018 4.018 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.140 0.860 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.021 0.979 37 H 0.040 0.960 38 H 0.081 0.919 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.123 0.877 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.106 0.894 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.125 13.848 3.429 19.385 hybrid contribution -1.297 0.940 0.037 1.603 sum -14.423 14.788 3.466 20.946 Atomic orbital electron populations 1.23901 0.95423 1.02286 0.99080 1.23279 0.96465 0.98618 1.00855 1.20890 0.91905 0.97301 0.88198 1.46304 1.14129 1.44233 1.11643 1.25589 0.82468 0.98945 0.98558 1.19810 0.94994 0.96317 0.90400 0.90937 1.21667 0.96708 0.97362 1.02595 1.19195 0.96216 0.87993 0.97607 1.21978 1.45356 0.99572 0.96940 0.92956 1.25798 0.95761 0.95598 1.01586 1.70729 1.41999 1.40099 1.01854 0.83535 0.76369 0.76023 0.74250 1.21397 1.21085 1.21496 1.74052 1.23171 1.14287 1.01287 1.74721 0.99459 1.16210 1.24081 1.22265 0.95083 1.01285 0.84430 1.59391 1.06269 1.14008 1.37673 1.22422 0.93712 0.93854 0.97226 1.21003 0.99945 0.98441 0.96542 1.21785 1.00637 0.94233 0.99284 1.21253 1.00039 0.96297 0.96913 1.20783 0.99806 0.99313 0.96765 1.20851 1.01916 0.92534 0.86539 0.87722 0.88218 0.86014 0.88030 0.88065 0.92162 0.90607 0.94861 0.97921 0.95984 0.91931 0.89223 0.89901 0.90485 0.90779 0.87736 0.92285 0.91493 0.92252 0.89449 0.88865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 13.32 29.02 0.39 -1.26 16 2 C -0.17 -2.17 9.66 -36.02 -0.35 -2.52 16 3 C 0.14 1.76 6.22 -5.19 -0.03 1.73 16 4 N -0.47 -7.75 2.79 -115.36 -0.32 -8.07 16 5 C 0.21 4.21 6.58 -154.02 -1.01 3.20 16 6 C 0.01 0.12 2.71 -91.77 -0.25 -0.13 16 7 H 0.07 1.40 7.09 -51.93 -0.37 1.03 16 8 C -0.13 -2.42 8.99 37.16 0.33 -2.09 16 9 C 0.03 0.71 3.74 -27.88 -0.10 0.61 16 10 C -0.60 -16.45 8.41 -34.44 -0.29 -16.74 16 11 H 0.05 1.38 7.06 -52.49 -0.37 1.01 16 12 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 13 N -0.91 -28.02 13.65 55.43 0.76 -27.26 16 14 Si 1.07 24.98 29.90 -169.99 -5.08 19.90 16 15 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 18 N -0.29 -6.34 12.18 32.99 0.40 -5.94 16 19 N -0.30 -5.89 9.70 30.31 0.29 -5.60 16 20 C 0.33 5.36 5.41 -318.87 -1.73 3.63 16 21 N -0.45 -5.80 5.03 -175.92 -0.88 -6.69 16 22 C 0.06 0.62 6.02 -3.59 -0.02 0.60 16 23 C -0.12 -1.57 5.56 -28.03 -0.16 -1.73 16 24 C -0.14 -1.85 8.79 -35.89 -0.32 -2.16 16 25 C -0.14 -1.76 4.80 -101.01 -0.49 -2.24 16 26 C -0.11 -1.14 10.01 36.01 0.36 -0.78 16 27 C 0.11 1.26 5.46 -5.28 -0.03 1.23 16 28 H 0.10 0.95 8.06 -52.48 -0.42 0.52 16 29 H 0.10 0.79 7.84 -52.49 -0.41 0.38 16 30 H 0.12 1.86 8.06 -52.48 -0.42 1.44 16 31 H 0.10 1.07 7.76 -51.93 -0.40 0.67 16 32 H 0.10 1.20 7.49 -51.93 -0.39 0.81 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.08 1.49 6.95 -51.93 -0.36 1.13 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.00 0.07 8.00 -51.93 -0.42 -0.35 16 37 H 0.02 0.62 8.01 -51.93 -0.42 0.20 16 38 H 0.27 8.43 7.22 -40.82 -0.29 8.14 16 39 H 0.09 0.80 8.08 -51.93 -0.42 0.38 16 40 H 0.08 0.93 6.91 -51.93 -0.36 0.57 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 1.25 7.31 -51.93 -0.38 0.87 16 43 H 0.10 1.33 7.63 -52.49 -0.40 0.93 16 44 H 0.06 0.60 7.61 -51.93 -0.40 0.21 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.09 1.09 8.02 -51.93 -0.42 0.68 16 48 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 383.66 15.07 5.78 5.78 Total: -1.00 -32.86 383.66 -10.82 -43.67 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.98 Total: 2.47 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -3.78 Total: -18.26 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.25 Total: -53.56 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.08 Total: 19.90 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.86 -10.82 -43.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121600907.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.725 kcal (2) G-P(sol) polarization free energy of solvation -32.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds