Wall clock time and date at job start Tue Mar 31 2020 11:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00391 * 2 1 4 4 N 1.46502 * 109.47265 * 124.99180 * 3 2 1 5 5 C 1.36736 * 127.13437 * 84.38865 * 4 3 2 6 6 C 1.50706 * 126.34704 * 359.97438 * 5 4 3 7 7 H 1.09004 * 109.46797 * 359.72115 * 6 5 4 8 8 C 1.53000 * 109.46609 * 119.71671 * 6 5 4 9 9 C 1.53002 * 109.47138 * 239.72086 * 6 5 4 10 10 C 1.50700 * 109.46705 * 175.00356 * 9 6 5 11 11 H 1.08001 * 120.00172 * 359.97438 * 10 9 6 12 12 C 1.37876 * 119.99795 * 179.97438 * 10 9 6 13 13 N 1.31516 * 120.00209 * 0.27098 * 12 10 9 14 14 Si 1.86798 * 120.00202 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47331 * 89.99649 * 14 12 10 16 16 H 1.48499 * 109.47145 * 210.00195 * 14 12 10 17 17 H 1.48502 * 109.47118 * 329.99824 * 14 12 10 18 18 N 1.30291 * 107.30636 * 179.73286 * 5 4 3 19 19 N 1.28525 * 110.05289 * 0.26058 * 18 5 4 20 20 C 1.31218 * 109.86190 * 359.97438 * 19 18 5 21 21 N 1.38583 * 126.47318 * 179.97438 * 20 19 18 22 22 C 1.47242 * 111.00163 * 264.94630 * 21 20 19 23 23 C 1.53085 * 108.46746 * 54.58837 * 22 21 20 24 24 C 1.50299 * 109.72043 * 48.96241 * 23 22 21 25 25 C 1.29831 * 122.89397 * 343.47693 * 24 23 22 26 26 C 1.50700 * 118.35751 * 180.37298 * 25 24 23 27 27 C 1.46843 * 111.00082 * 27.88163 * 21 20 19 28 28 H 1.08004 * 120.00416 * 180.02562 * 1 2 3 29 29 H 1.08000 * 119.99966 * 0.02562 * 1 2 3 30 30 H 1.08004 * 119.99779 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.46745 * 4.99523 * 3 2 1 32 32 H 1.08995 * 109.46835 * 244.99621 * 3 2 1 33 33 H 1.08997 * 109.46822 * 60.00663 * 8 6 5 34 34 H 1.09005 * 109.46505 * 180.02562 * 8 6 5 35 35 H 1.08996 * 109.47501 * 299.99780 * 8 6 5 36 36 H 1.08990 * 109.47175 * 55.00337 * 9 6 5 37 37 H 1.09003 * 109.46798 * 294.99718 * 9 6 5 38 38 H 0.97005 * 119.99602 * 359.72950 * 13 12 10 39 39 H 1.09000 * 109.63477 * 174.28359 * 22 21 20 40 40 H 1.09000 * 109.63698 * 294.68697 * 22 21 20 41 41 H 1.09006 * 109.42698 * 169.03758 * 23 22 21 42 42 H 1.08998 * 109.42933 * 288.88064 * 23 22 21 43 43 H 1.08000 * 118.55742 * 163.50395 * 24 23 22 44 44 H 1.08998 * 109.47453 * 0.02562 * 26 25 24 45 45 H 1.09002 * 109.46636 * 120.00698 * 26 25 24 46 46 H 1.09002 * 109.46760 * 239.99768 * 26 25 24 47 47 H 1.09003 * 109.33257 * 47.78420 * 27 21 20 48 48 H 1.08997 * 109.33560 * 167.28329 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.2549 0.8054 1.1761 6 6 4.9595 0.0791 0.0593 7 1 4.3043 0.0266 -0.8102 8 6 6.2390 0.8319 -0.3110 9 6 5.3150 -1.3371 0.5163 10 6 5.9085 -2.1032 -0.6378 11 1 6.0205 -1.6276 -1.6010 12 6 6.3085 -3.4111 -0.4640 13 7 6.1672 -3.9919 0.7075 14 14 7.0435 -4.3610 -1.8947 15 1 8.5164 -4.1733 -1.9090 16 1 6.7298 -5.8046 -1.7437 17 1 6.4683 -3.8603 -3.1690 18 7 4.7364 1.0525 2.3613 19 7 3.8699 1.6896 3.0650 20 6 2.7803 1.8852 2.3605 21 7 1.6315 2.5349 2.7832 22 6 0.6372 1.5736 3.2885 23 6 1.2951 0.7231 4.3781 24 6 1.9994 1.6151 5.3617 25 6 2.2871 2.8555 5.1082 26 6 3.0033 3.6548 6.1661 27 6 1.9410 3.5337 3.8142 28 1 -0.5401 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6214 1.4024 -0.9313 33 1 6.8942 0.8844 0.5585 34 1 6.7484 0.3069 -1.1191 35 1 5.9857 1.8408 -0.6366 36 1 4.4146 -1.8435 0.8639 37 1 6.0396 -1.2854 1.3290 38 1 5.7852 -3.4988 1.4503 39 1 -0.2129 2.1121 3.7073 40 1 0.2997 0.9333 2.4735 41 1 0.5310 0.1438 4.8966 42 1 2.0165 0.0448 3.9225 43 1 2.2788 1.2062 6.3214 44 1 3.1813 3.0259 7.0384 45 1 3.9565 4.0071 5.7720 46 1 2.3905 4.5094 6.4528 47 1 2.7859 4.1399 3.4873 48 1 1.0746 4.1777 3.9643 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121600907.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:07 Heat of formation + Delta-G solvation = 93.336711 kcal Electronic energy + Delta-G solvation = -27740.390956 eV Core-core repulsion = 24217.530033 eV Total energy + Delta-G solvation = -3522.860923 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.11611 -40.58786 -37.46610 -37.05669 -35.09944 -34.36028 -33.62987 -32.78341 -30.17967 -28.57957 -27.98971 -27.73286 -26.03406 -25.76755 -24.00183 -23.76629 -21.99889 -21.37436 -20.60633 -19.28396 -18.88904 -17.94654 -17.45990 -17.14310 -16.47052 -16.18529 -15.76851 -15.62317 -15.58937 -15.20147 -15.09764 -14.64975 -14.59884 -14.22941 -13.85580 -13.70560 -13.49693 -13.38493 -13.14325 -13.08580 -12.91248 -12.82201 -12.67982 -12.60975 -12.52348 -12.36405 -12.08319 -11.94095 -11.88766 -11.76608 -11.36381 -11.09441 -10.75393 -10.58523 -10.55219 -10.39849 -9.65106 -9.49115 -8.67110 -6.38052 0.67069 0.93089 1.28843 1.52209 1.54523 1.63875 1.79921 1.81704 2.58397 2.70047 3.18603 3.39378 3.55588 3.73573 3.75166 3.77175 3.86453 3.92153 4.04448 4.12766 4.27166 4.30436 4.38531 4.41979 4.44090 4.49885 4.54055 4.61632 4.70768 4.74698 4.81404 4.85018 4.90070 4.93640 4.95961 5.01156 5.06030 5.13354 5.17229 5.23583 5.41240 5.49882 5.53495 5.55357 5.60628 5.67239 5.95697 6.03271 6.17783 6.21106 6.53647 7.45619 7.76834 8.72200 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.016436 B = 0.003852 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.121064 B = 7267.830987 C = 7773.263762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.208 4.208 3 C 0.137 3.863 4 N -0.465 5.465 5 C 0.196 3.804 6 C 0.017 3.983 7 H 0.089 0.911 8 C -0.117 4.117 9 C 0.040 3.960 10 C -0.602 4.602 11 H 0.068 0.932 12 C -0.041 4.041 13 N -0.941 5.941 14 Si 1.121 2.879 15 H -0.274 1.274 16 H -0.288 1.288 17 H -0.260 1.260 18 N -0.332 5.332 19 N -0.333 5.333 20 C 0.345 3.655 21 N -0.440 5.440 22 C 0.058 3.942 23 C -0.118 4.118 24 C -0.166 4.166 25 C -0.139 4.139 26 C -0.108 4.108 27 C 0.104 3.896 28 H 0.112 0.888 29 H 0.132 0.868 30 H 0.081 0.919 31 H 0.132 0.868 32 H 0.108 0.892 33 H 0.039 0.961 34 H 0.072 0.928 35 H 0.064 0.936 36 H -0.029 1.029 37 H -0.017 1.017 38 H 0.249 0.751 39 H 0.129 0.871 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.024 0.976 43 H 0.098 0.902 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.087 0.913 47 H 0.078 0.922 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.125 17.345 1.370 24.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.227 4.227 3 C 0.016 3.984 4 N -0.157 5.157 5 C -0.073 4.073 6 C -0.004 4.004 7 H 0.107 0.893 8 C -0.175 4.175 9 C 0.002 3.998 10 C -0.640 4.640 11 H 0.086 0.914 12 C -0.238 4.238 13 N -0.579 5.579 14 Si 0.941 3.059 15 H -0.200 1.200 16 H -0.214 1.214 17 H -0.184 1.184 18 N -0.171 5.171 19 N -0.176 5.176 20 C -0.012 4.012 21 N -0.163 5.163 22 C -0.068 4.068 23 C -0.156 4.156 24 C -0.185 4.185 25 C -0.140 4.140 26 C -0.166 4.166 27 C -0.022 4.022 28 H 0.130 0.870 29 H 0.150 0.850 30 H 0.099 0.901 31 H 0.150 0.850 32 H 0.126 0.874 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.083 0.917 36 H -0.011 1.011 37 H 0.001 0.999 38 H 0.059 0.941 39 H 0.147 0.853 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.042 0.958 43 H 0.116 0.884 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.106 0.894 47 H 0.096 0.904 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.780 16.230 1.663 22.697 hybrid contribution -0.626 0.265 0.674 0.958 sum -16.406 16.494 2.337 23.381 Atomic orbital electron populations 1.24181 0.94198 1.04127 0.94374 1.22992 0.97411 0.97032 1.05249 1.21229 0.91809 0.98295 0.87058 1.46457 1.13397 1.43212 1.12653 1.25190 0.84115 1.00070 0.97914 1.19541 0.96236 0.93477 0.91149 0.89262 1.21578 0.95514 0.98892 1.01530 1.18956 0.93593 0.91209 0.96022 1.22373 1.44118 0.99747 0.97743 0.91423 1.27490 0.95704 0.97478 1.03101 1.70889 1.44167 1.40279 1.02517 0.82910 0.76424 0.74471 0.72046 1.19951 1.21372 1.18375 1.73939 1.25155 1.15553 1.02461 1.74616 1.00615 1.17601 1.24763 1.22687 0.95297 0.99205 0.83966 1.59635 1.04568 1.13898 1.38218 1.22568 0.93807 0.93737 0.96714 1.20954 0.99331 0.98185 0.97138 1.21836 1.02335 0.94816 0.99484 1.21526 0.98737 0.96188 0.97549 1.20804 0.99594 1.00039 0.96129 1.21077 1.03462 0.92254 0.85445 0.87002 0.85013 0.90084 0.84983 0.87350 0.94194 0.90871 0.91692 1.01060 0.99902 0.94144 0.85345 0.89576 0.88706 0.95756 0.88358 0.92563 0.92533 0.89405 0.90359 0.84720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 13.32 67.78 0.90 -1.27 16 2 C -0.21 -5.02 9.66 25.65 0.25 -4.77 16 3 C 0.14 3.21 6.22 85.63 0.53 3.74 16 4 N -0.46 -15.26 2.79 -518.90 -1.45 -16.71 16 5 C 0.20 8.10 6.58 137.64 0.91 9.01 16 6 C 0.02 0.72 2.71 -11.54 -0.03 0.69 16 7 H 0.09 3.46 7.09 -2.38 -0.02 3.45 16 8 C -0.12 -4.57 8.99 71.98 0.65 -3.92 16 9 C 0.04 2.19 3.74 29.85 0.11 2.31 16 10 C -0.60 -33.84 8.41 25.60 0.22 -33.62 16 11 H 0.07 3.54 7.06 -2.91 -0.02 3.52 16 12 C -0.04 -2.40 5.46 84.65 0.46 -1.93 16 13 N -0.94 -60.57 13.65 21.45 0.29 -60.28 16 14 Si 1.12 50.14 29.90 68.60 2.05 52.19 16 15 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 16 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 17 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 18 N -0.33 -15.38 12.18 -49.54 -0.60 -15.98 16 19 N -0.33 -13.47 9.70 -58.00 -0.56 -14.04 16 20 C 0.35 11.24 5.41 260.11 1.41 12.64 16 21 N -0.44 -10.20 5.03 -710.49 -3.57 -13.78 16 22 C 0.06 1.15 6.02 86.27 0.52 1.67 16 23 C -0.12 -3.03 5.56 29.75 0.17 -2.86 16 24 C -0.17 -4.33 8.79 26.73 0.23 -4.09 16 25 C -0.14 -3.20 4.80 -15.46 -0.07 -3.27 16 26 C -0.11 -2.13 10.01 71.24 0.71 -1.41 16 27 C 0.10 2.11 5.46 85.39 0.47 2.58 16 28 H 0.11 1.71 8.06 -2.91 -0.02 1.69 16 29 H 0.13 1.39 7.84 -2.91 -0.02 1.36 16 30 H 0.08 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.13 2.27 7.76 -2.39 -0.02 2.26 16 32 H 0.11 2.36 7.49 -2.39 -0.02 2.34 16 33 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.07 2.85 6.95 -2.38 -0.02 2.83 16 35 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 36 H -0.03 -1.73 8.00 -2.39 -0.02 -1.75 16 37 H -0.02 -1.08 8.01 -2.39 -0.02 -1.09 16 38 H 0.25 16.72 7.22 -92.70 -0.67 16.05 16 39 H 0.13 1.64 8.08 -2.39 -0.02 1.62 16 40 H 0.09 1.66 6.91 -2.39 -0.02 1.64 16 41 H 0.09 2.00 8.14 -2.38 -0.02 1.99 16 42 H 0.02 0.86 7.31 -2.39 -0.02 0.85 16 43 H 0.10 2.59 7.63 -2.91 -0.02 2.57 16 44 H 0.06 1.12 7.61 -2.39 -0.02 1.10 16 45 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.08 1.79 8.02 -2.39 -0.02 1.77 16 48 H 0.14 1.69 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -77.83 383.66 4.60 -73.22 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 1.02 Total: 19.89 kcal Atomic # 6 Polarization: -31.94 SS G_CDS: 7.42 Total: -24.52 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -5.90 Total: -120.78 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 2.05 Total: 52.19 kcal Total: -77.83 4.60 -73.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121600907.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.560 kcal (2) G-P(sol) polarization free energy of solvation -77.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds